>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
            (Endostatin-XV)]
          Length = 1367

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 269  PPAEP-FPGLAGR*AEKITLPEAPAGVSGLP 180
            PP  P +PGL G+  E +  P+ P G+ GLP
Sbjct: 1033 PPGLPGYPGLVGQKGEAVVGPQGPPGIPGLP 1063

>K0220_HUMAN (Q92617) Protein KIAA0220 (Fragment)|
          Length = 884

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = -2

Query: 217 LFPRPPPASPDFLTSPSTATSRLGKS*----PDSLSGDARDRAICRGYPVP*DRLTHVQV 50
           L P PP A  +  T P    + L  S     P S   + + RA C  +P+P     +++ 
Sbjct: 158 LTPLPPSADDNLKTPPECLLTPLPPSALPSAPPSADDNLKTRAECLLHPLPPSADDNLKT 217

Query: 49  PFTWNLSPLRPS 14
           P    L+PL PS
Sbjct: 218 PSERQLTPLPPS 229

>US10_EHV4 (P18349) 28 kDa protein (ORF3)|
          Length = 259

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 159 VAVDGDVRKSGDAGGGLG 212
           +AVDGDVR  GD GGG G
Sbjct: 40  MAVDGDVRTGGDCGGGEG 57

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 269 PPAEP-FPGLAGR*AEKITLPEAPAGVSGLPNVAVNRHIPAREILTRFPFGG 117
           PP  P FPG  G        P  PAG+ G+P +   R  P   I+  F F G
Sbjct: 408 PPGPPGFPGDPG--------PPGPAGLPGIPGIDGIRGPPGTVIMMPFQFAG 451

>MAVS_MOUSE (Q8VCF0) Mitochondrial antiviral signaling protein (Interferon-beta|
           promoter stimulator protein 1) (IPS-1) (Virus-induced
           signaling adapter) (CARD adapter inducing
           interferon-beta) (Cardif)
          Length = 503

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = -1

Query: 251 PGLAGR*AEKITLPEAPAGVSGLPNVAVNRHIPAREILTRFPFGGCA*SRYLPGLPRPLG 72
           PG + R  E + LP+ PA VSG    A   +IP   +            R  P  P+P+ 
Sbjct: 98  PGTSLRSLEPLQLPDFPAAVSGPSAFAPGHNIPDHGL------------RETPSCPKPVQ 145

Query: 71  SAYPCASAV 45
              P  S V
Sbjct: 146 DTQPPESPV 154

>ADA11_MOUSE (Q9R1V4) ADAM 11 precursor (A disintegrin and metalloproteinase|
           domain 11) (Metalloproteinase-like, disintegrin-like,
           and cysteine-rich protein) (MDC)
          Length = 773

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 118 PPKGNRVKISRAGM-WRLTATLGSPETPAGASGRVIFSA*RPANPGNGSAGGRVQWPE 288
           PP G      R  + WR +A +GSPE+P G+          P+     S+GG V+ P+
Sbjct: 19  PPPGLGALGPRGALHWRSSAHVGSPESPEGS------EVTEPSRLVRQSSGGEVRKPQ 70

>OC17_CHICK (Q9PRS8) Ovocleidin-17 (OC-17)|
          Length = 142

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = +1

Query: 166 LTATLGSPETPAGASGRVIFSA*RPANP-----GNGSAGGRVQWPEEHRTSRGVRCA 321
           L A+ G   +  GA GRV     RPA        +G+A     W    +  RG RCA
Sbjct: 58  LNASRGGDGSGEGADGRVWIGLHRPAGSRSWRWSDGTAPRFASWHRTAKARRGGRCA 114

>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 274  PYLRLNRFQGWQAVKQKR*LFPRPPPASPDFLTSPSTAT 158
            P  R +R Q W AV+    L   P PASP  L  P+ A+
Sbjct: 1832 PKSRPSRNQRWGAVRADESLTAIPEPASPQLLDIPTHAS 1870

>YDEQ_BACSU (P96674) Putative NAD(P)H oxidoreductase ydeQ (EC 1.6.99.-)|
          Length = 197

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 112 AHPPKGNRVKISRAGMWRLTATLGSPETPAGASGRVIFSA*RPANPGNGSA 264
           AH P GN++K      W    ++GSPE    A G  +FS      P   SA
Sbjct: 91  AHGPGGNKLKGKE---WVTAMSIGSPEHSYQAGGYNLFSISELTKPFQASA 138

>RLPA_TREPA (O83958) RlpA-like protein precursor|
          Length = 318

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
 Frame = -1

Query: 272 LPPAEPFPGLAGR*AEKITLPEAP----AGVSGLPNVAVNRHIPAREILTRFPFGGCA*S 105
           +PP  P        A+    P AP    AG  G+P VA    +PA E      +G    +
Sbjct: 147 VPPTAPTSSAPVMYADPHNPPPAPVGRRAGTPGVPGVANTTDVPASE------YGAPPVA 200

Query: 104 RYLPGLPR---PLGSAYPCASA--VHMEPFSSSA 18
              PG      P G+A P ++A   H +P  SS+
Sbjct: 201 YAAPGSTPSRVPYGTAVPGSAAPNSHAQPVPSSS 234

>YHS4_CAEEL (O18303) Hypothetical protein ZK849.4 in chromosome I|
          Length = 602

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 263 AEPFPGLAGR*AEKITLPEAPAGVSGLPNVAVNRHIPAREILTRF 129
           A P PG   R A  + +P AP G + +   +V+  + AR  + R+
Sbjct: 173 ALPMPGAPERPAVALPMPGAPEGPAAIQQPSVDVKLTARRTIIRY 217

>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 251  PGLAGR*AEKITLPEAPAGVSGLPNVAVNRHIPAREILTRFP-FGGCA*SRYLPGLP 84
            PGL G+  + IT P+  AG+ GLP       +P  +     P + G A  +  PGLP
Sbjct: 1261 PGLPGQPGKSITGPKGNAGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGIKGEPGLP 1317



 Score = 27.3 bits (59), Expect = 9.8
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = -1

Query: 269  PPAEPFPGLAGR*AEK-ITLPEAPAGVSGLPNVAVNRHI---PAREILTRFPFGGCA*SR 102
            P     PGL G   E  +  P+ PAG+ GLP +     +   P ++  T FP        
Sbjct: 1344 PGPAGLPGLPGMKGESGLPGPQGPAGLPGLPGLKGEPGLPGFPGQKGETGFPG-----QP 1398

Query: 101  YLPGLPRPLG-SAYPCA 54
             +PGLP   G S YP A
Sbjct: 1399 GIPGLPGMKGDSGYPGA 1415

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
 Frame = -1

Query: 317  HR-TPRDVRCSSGHWTLPPAEPFPGLAGR*AEKIT--LPEAPAGVSGLPNVAVNRHIPAR 147
            HR TP ++R  +   T  P      +    A  +T  LPE PAG   L  +     +   
Sbjct: 1846 HRATPAELRSHAPPGTRKPHTVVVQMGEGTAGTVTTLLPEEPAGALDLTGMRPESQLACC 1905

Query: 146  EILTRFPFGGCA*SRYLPGLPRP 78
            +++ +FPFG      + P    P
Sbjct: 1906 DMVYKFPFGSSCTGTFHPAPSAP 1928

>DPO3B_MYCPA (Q9L7L6) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 399

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
 Frame = +3

Query: 93  RQIARSRASPERESG*DFPSRDVA------VDG-DVRKSGDAGGGLGKSYL 224
           R++  S ASP+ E+    P++ +A      +DG DVR S  AG G+GK  L
Sbjct: 189 RELTWSAASPDIEAAVLVPAKTLAEAARTGIDGSDVRLSLGAGAGVGKDGL 239

>IF2_MYCTU (P65131) Translation initiation factor IF-2|
          Length = 900

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 121 PKGNRVKISRAGMWRLTATLGS-PETPAGASGRVIFSA*RPANPGNGSAGGRVQWPEEHR 297
           P   R   +R G+ R  A+ GS P  P GA G       RP  PG    GGR   P   R
Sbjct: 170 PPAPRPGTARPGVPRPGASPGSMPPRPGGAVGGA-----RPPRPGAPRPGGRPGAPGAGR 224

Query: 298 TSRG 309
           +  G
Sbjct: 225 SDAG 228

>IF2_MYCBO (P65132) Translation initiation factor IF-2|
          Length = 900

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 121 PKGNRVKISRAGMWRLTATLGS-PETPAGASGRVIFSA*RPANPGNGSAGGRVQWPEEHR 297
           P   R   +R G+ R  A+ GS P  P GA G       RP  PG    GGR   P   R
Sbjct: 170 PPAPRPGTARPGVPRPGASPGSMPPRPGGAVGGA-----RPPRPGAPRPGGRPGAPGAGR 224

Query: 298 TSRG 309
           +  G
Sbjct: 225 SDAG 228

>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1|
          Length = 2171

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 274  PYLRLNRFQGWQAVKQKR*LFPRPPPASPDFLTSPSTAT 158
            P  + +R Q W AV+    L   P PASP  L +P  A+
Sbjct: 1830 PKSQASRNQRWGAVRAAESLTAIPEPASPQLLETPIHAS 1868

>COFA1_HUMAN (P39059) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
            (Endostatin-XV) (Restin) (Related to endostatin)]
          Length = 1388

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 269  PPAEPF-PGLAGR*AEKITLPEAPAGVSGLP 180
            PP  P  PG AG+  E +  P+ P G  GLP
Sbjct: 1054 PPGLPGNPGPAGQKGETVVGPQGPPGAPGLP 1084

>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor|
            with BRCT domains 1)
          Length = 2089

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 274  PYLRLNRFQGWQAVKQKR*LFPRPPPASPDFLTSPSTAT 158
            P  + +R Q W AV+    L   P PASP  L +P  A+
Sbjct: 1748 PKSQASRNQRWGAVRAAESLTAIPEPASPQLLETPIHAS 1786

>AGI_URTDI (P11218) Lectin/endochitinase precursor (EC 3.2.1.14) (Agglutinin)|
           (UDA)
          Length = 372

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 56  HMGKPILRDGVTPADSAITRIPRKGI 133
           H  KP   D V  A+SA  RIP KG+
Sbjct: 287 HDNKPSCHDIVLNANSAANRIPNKGV 312


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,848,021
Number of Sequences: 219361
Number of extensions: 1182481
Number of successful extensions: 3532
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3529
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)