ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast65g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192754.1| Oryza sativa (japonica cultivar-group), predic... 264 2e-67
2dbj|AK071340.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
3gb|BT016246.1| Zea mays clone Contig79 mRNA sequence 220 3e-54
4gb|BT016503.1| Zea mays clone Contig336 mRNA sequence 212 6e-52
5gb|AY105055.1| Zea mays PCO068511 mRNA sequence 212 6e-52
6ref|XM_493741.2| Oryza sativa (japonica cultivar-group), mRNA 105 1e-19
7dbj|AK071423.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
9dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
10dbj|D85381.1| Oryza sativa (japonica cultivar-group) mitochondri... 88 2e-14
11dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
12ref|NM_106672.3| Arabidopsis thaliana cytochrome-c oxidase AT1G8... 70 6e-09
13gb|BT006403.1| Arabidopsis thaliana At1g80230 gene, complete cds 70 6e-09
14gb|AY086953.1| Arabidopsis thaliana clone 29901 mRNA, complete s... 70 6e-09
15emb|BX817450.1|CNS0AEEM Arabidopsis thaliana Full-length cDNA Co... 62 1e-06
16gb|AF053560.1|AF053560 Mesembryanthemum crystallinum cytochrome ... 48 0.021
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
18dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
19emb|BX323857.16| Mouse DNA sequence from clone RP23-12C2 on chro... 44 0.33
20emb|AJ011571.1|CPA011571 Cyanophora paradoxa mRNA for hypothetic... 44 0.33
21gb|AC132451.3| Mus musculus BAC clone RP23-194C20 from chromosom... 42 1.3
22ref|XM_812303.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.3
23gb|AC126013.12| Medicago truncatula clone mth2-32e10, complete s... 42 1.3
24emb|CR394562.10| Zebrafish DNA sequence from clone CH211-284D14 ... 42 1.3
25gb|AC130811.22| Medicago truncatula clone mth2-26b4, complete se... 42 1.3
26gb|AY603753.2| Danio rerio obscurin-MLCK mRNA, partial cds 42 1.3
27gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18... 42 1.3
28gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.3
29dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.3
30ref|XM_463361.1| Oryza sativa (japonica cultivar-group), predic... 40 5.2
31gb|AC145320.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
32gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 5.2
33gb|AY129337.1| Mycobacteriophage Bxz1, complete genome 40 5.2
34gb|AC158674.10| Mus musculus 6 BAC RP23-54E12 (Roswell Park Canc... 40 5.2
35emb|BX897656.9| Zebrafish DNA sequence from clone CH211-271K12, ... 40 5.2
36gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.2
37dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
38gb|AC008915.11| Homo sapiens chromosome 16 clone CTD-2270L9, com... 40 5.2
39gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.2
40dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
41dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
42dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
43gb|AC157097.5| Mus musculus 6 BAC RP24-369M3 (Roswell Park Cance... 40 5.2
44gb|DQ229268.1| Phytophthora sojae elicitin-like protein SOL1D ps... 40 5.2
45emb|CT009727.7| Zebrafish DNA sequence from clone CH73-40M17 in ... 40 5.2
46gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2 
>ref|NM_192754.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 510

 Score =  264 bits (133), Expect = 2e-67
 Identities = 218/245 (88%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 146 gtggaggatgtcatgcccatagccacggggttggagcgcgaggagctcgaggcggagctc 205
           |||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 184 gtggaggacgtcatgcccatcgccacggggctggagcgcgaggagctcgcggcggagctc 243

                                                                       
Query: 206 caggggaagaagcgcttcgacatggatccccctgtcggtcccttcggtaccaaggaggcg 265
            ||||| ||||||| |||||||||||||| || || || || || |||||||||||||| 
Sbjct: 244 aagggggagaagcggttcgacatggatcctcccgtaggcccatttggtaccaaggaggcc 303

                                                                       
Query: 266 ccagctgtcattgagtcctattttgacaagagaatagtaggttgccctggtgatgaagga 325
           |||||||||||||| ||||| | | ||||||| ||||| ||||| ||||||| |||||||
Sbjct: 304 ccagctgtcattgaatcctactataacaagaggatagttggttgtcctggtggtgaagga 363

                                                                       
Query: 326 gaggatgagcatgatctcgtatggttctggttg-aaaaagatgagccgcatgaatgccca 384
           ||||||||||||||| | ||||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 364 gaggatgagcatgatgttgtatggttctggttgaaaaaagatgaaccgcatgagtgccca 423

                
Query: 385 gtctg 389
           |||||
Sbjct: 424 gtctg 428



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 86  gccttccgccgcactgcccctctcctctccgcggacaagccggcg 130
           ||||||||||||||   ||||||||| |||| |||||||||||||
Sbjct: 136 gccttccgccgcaccagccctctcctgtccggggacaagccggcg 180
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>dbj|AK071340.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089B16, full
           insert sequence
          Length = 944

 Score =  264 bits (133), Expect = 2e-67
 Identities = 218/245 (88%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 146 gtggaggatgtcatgcccatagccacggggttggagcgcgaggagctcgaggcggagctc 205
           |||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 263 gtggaggacgtcatgcccatcgccacggggctggagcgcgaggagctcgcggcggagctc 322

                                                                       
Query: 206 caggggaagaagcgcttcgacatggatccccctgtcggtcccttcggtaccaaggaggcg 265
            ||||| ||||||| |||||||||||||| || || || || || |||||||||||||| 
Sbjct: 323 aagggggagaagcggttcgacatggatcctcccgtaggcccatttggtaccaaggaggcc 382

                                                                       
Query: 266 ccagctgtcattgagtcctattttgacaagagaatagtaggttgccctggtgatgaagga 325
           |||||||||||||| ||||| | | ||||||| ||||| ||||| ||||||| |||||||
Sbjct: 383 ccagctgtcattgaatcctactataacaagaggatagttggttgtcctggtggtgaagga 442

                                                                       
Query: 326 gaggatgagcatgatctcgtatggttctggttg-aaaaagatgagccgcatgaatgccca 384
           ||||||||||||||| | ||||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 443 gaggatgagcatgatgttgtatggttctggttgaaaaaagatgaaccgcatgagtgccca 502

                
Query: 385 gtctg 389
           |||||
Sbjct: 503 gtctg 507



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 86  gccttccgccgcactgcccctctcctctccgcggacaagccggcg 130
           ||||||||||||||   ||||||||| |||| |||||||||||||
Sbjct: 215 gccttccgccgcaccagccctctcctgtccggggacaagccggcg 259
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>gb|BT016246.1| Zea mays clone Contig79 mRNA sequence
          Length = 883

 Score =  220 bits (111), Expect = 3e-54
 Identities = 217/251 (86%), Gaps = 1/251 (0%)
 Strand = Plus / Plus

                                                                       
Query: 141 cgagtgtggaggatgtcatgcccatagccacggggttggagcgcgaggagctcgaggcgg 200
           ||||||||||||| ||||||||||| ||||||||| | ||||| |||||||| ||||| |
Sbjct: 170 cgagtgtggaggacgtcatgcccatcgccacggggctcgagcgggaggagctggaggccg 229

                                                                       
Query: 201 agctccaggggaagaagcgcttcgacatggatccccctgtcggtcccttcggtaccaagg 260
           ||||| ||||||||||||| || |||||||||||||  ||||| ||||||||||||||||
Sbjct: 230 agctcaaggggaagaagcggtttgacatggatcccctggtcggccccttcggtaccaagg 289

                                                                       
Query: 261 aggcgccagctgtcattgagtcctattttgacaagagaatagtaggttgccctggtgatg 320
           |||  ||| ||||  |||||||||| | | ||||| | ||||| || |||||||||| ||
Sbjct: 290 aggaaccatctgtagttgagtcctactataacaagcggatagtcggctgccctggtggtg 349

                                                                       
Query: 321 aaggagaggatgagcatgatctcgtatggttctggttg-aaaaagatgagccgcatgaat 379
           | ||||||||||| || ||| | ||||||||||||||| ||||||||||||||||||| |
Sbjct: 350 agggagaggatgaacacgatgttgtatggttctggttgaaaaaagatgagccgcatgagt 409

                      
Query: 380 gcccagtctgc 390
           | |||||||||
Sbjct: 410 gtccagtctgc 420



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 69  tctccacggcggtcgcggccttccgccgcactgcccctctcctctccgcggacaagccgg 128
           ||||| |||||| ||| || |||||||||||   ||| |||||||| | |||||||||||
Sbjct: 110 tctcctcggcggccgccgctttccgccgcaccagcccgctcctctcaggggacaagccgg 169

             
Query: 129 cg 130
           ||
Sbjct: 170 cg 171
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>gb|BT016503.1| Zea mays clone Contig336 mRNA sequence
          Length = 950

 Score =  212 bits (107), Expect = 6e-52
 Identities = 216/251 (86%), Gaps = 1/251 (0%)
 Strand = Plus / Plus

                                                                       
Query: 141 cgagtgtggaggatgtcatgcccatagccacggggttggagcgcgaggagctcgaggcgg 200
           |||| |||||||| ||||||||||| ||||||||| | ||||| |||||||| ||||| |
Sbjct: 235 cgagggtggaggacgtcatgcccatcgccacggggctcgagcgggaggagctagaggccg 294

                                                                       
Query: 201 agctccaggggaagaagcgcttcgacatggatccccctgtcggtcccttcggtaccaagg 260
           ||||||||||||||||||| || ||||||||| |||| ||||| ||||||||||||||||
Sbjct: 295 agctccaggggaagaagcggtttgacatggattccccggtcggccccttcggtaccaagg 354

                                                                       
Query: 261 aggcgccagctgtcattgagtcctattttgacaagagaatagtaggttgccctggtgatg 320
           |||  ||||||||||||||||| || | | ||||| | ||||| ||||| |||||||  |
Sbjct: 355 aggaaccagctgtcattgagtcatactataacaagcggatagtcggttgtcctggtggcg 414

                                                                       
Query: 321 aaggagaggatgagcatgatctcgtatggttctggttg-aaaaagatgagccgcatgaat 379
           | || ||||| || |||||| | ||||||||||||||| ||||||| ||||||||||| |
Sbjct: 415 agggtgaggacgaacatgatgttgtatggttctggttgaaaaaagacgagccgcatgagt 474

                      
Query: 380 gcccagtctgc 390
           | |||||||||
Sbjct: 475 gtccagtctgc 485



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 69  tctccacggcggtcgcggccttccgccgcactgcccctctcctctccgcggacaagccgg 128
           ||||| |||||| ||| | |||||||||||||  |||||||||||| | |||||||||||
Sbjct: 175 tctcctcggcggccgccggcttccgccgcactagccctctcctctcagaggacaagccgg 234

             
Query: 129 cg 130
           ||
Sbjct: 235 cg 236
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>gb|AY105055.1| Zea mays PCO068511 mRNA sequence
          Length = 982

 Score =  212 bits (107), Expect = 6e-52
 Identities = 216/251 (86%), Gaps = 1/251 (0%)
 Strand = Plus / Plus

                                                                       
Query: 141 cgagtgtggaggatgtcatgcccatagccacggggttggagcgcgaggagctcgaggcgg 200
           |||| |||||||| ||||||||||| ||||||||| | ||||| |||||||| ||||| |
Sbjct: 257 cgagggtggaggacgtcatgcccatcgccacggggctcgagcgggaggagctagaggccg 316

                                                                       
Query: 201 agctccaggggaagaagcgcttcgacatggatccccctgtcggtcccttcggtaccaagg 260
           ||||||||||||||||||| || ||||||||| |||| ||||| ||||||||||||||||
Sbjct: 317 agctccaggggaagaagcggtttgacatggattccccggtcggccccttcggtaccaagg 376

                                                                       
Query: 261 aggcgccagctgtcattgagtcctattttgacaagagaatagtaggttgccctggtgatg 320
           |||  ||||||||||||||||| || | | ||||| | ||||| ||||| |||||||  |
Sbjct: 377 aggaaccagctgtcattgagtcatactataacaagcggatagtcggttgtcctggtggcg 436

                                                                       
Query: 321 aaggagaggatgagcatgatctcgtatggttctggttg-aaaaagatgagccgcatgaat 379
           | || ||||| || |||||| | ||||||||||||||| ||||||| ||||||||||| |
Sbjct: 437 agggtgaggacgaacatgatgttgtatggttctggttgaaaaaagacgagccgcatgagt 496

                      
Query: 380 gcccagtctgc 390
           | |||||||||
Sbjct: 497 gtccagtctgc 507



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 69  tctccacggcggtcgcggccttccgccgcactgcccctctcctctccgcggacaagccgg 128
           ||||| |||||| ||| | |||||||||||||  |||||||||||| | |||||||||||
Sbjct: 197 tctcctcggcggccgccggcttccgccgcactagccctctcctctcagaggacaagccgg 256

             
Query: 129 cg 130
           ||
Sbjct: 257 cg 258
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>ref|XM_493741.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 887

 Score =  105 bits (53), Expect = 1e-19
 Identities = 204/253 (80%), Gaps = 1/253 (0%)
 Strand = Plus / Plus

                                                                       
Query: 139 gacgagtgtggaggatgtcatgcccatagccacggggttggagcgcgaggagctcgaggc 198
           |||||| |||||||| || ||||| || ||||| ||| | |||||||||||| |||  ||
Sbjct: 202 gacgagggtggaggacgtgatgccgatcgccaccgggctcgagcgcgaggagatcgccgc 261

                                                                       
Query: 199 ggagctccaggggaagaagcgcttcgacatggatccccctgtcggtcccttcggtaccaa 258
            |||||||||||||||||| | || || |||||  | || ||||| ||||| ||||||||
Sbjct: 262 cgagctccaggggaagaagaggtttgatatggacgcgcccgtcgggccctttggtaccaa 321

                                                                       
Query: 259 ggaggcgccagctgtcattgagtcctattttgacaagagaatagtaggttgccctggtga 318
           ||| || |||||||| ||| |||| || |   |||| || || || ||||| || |||| 
Sbjct: 322 ggaagctccagctgttattcagtcatactacaacaaaaggattgttggttgtcccggtgg 381

                                                                       
Query: 319 tgaaggagaggatgagcatgatctcgtatggttctggtt-gaaaaagatgagccgcatga 377
           |||||||||||| ||||||||| |||| ||||| ||||| || ||||   |||| |||||
Sbjct: 382 tgaaggagaggacgagcatgatgtcgtgtggttttggttggagaaaggcaagccacatga 441

                        
Query: 378 atgcccagtctgc 390
           |||||| ||||||
Sbjct: 442 atgccctgtctgc 454
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>dbj|AK071423.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098B10, full
           insert sequence
          Length = 887

 Score =  105 bits (53), Expect = 1e-19
 Identities = 204/253 (80%), Gaps = 1/253 (0%)
 Strand = Plus / Plus

                                                                       
Query: 139 gacgagtgtggaggatgtcatgcccatagccacggggttggagcgcgaggagctcgaggc 198
           |||||| |||||||| || ||||| || ||||| ||| | |||||||||||| |||  ||
Sbjct: 202 gacgagggtggaggacgtgatgccgatcgccaccgggctcgagcgcgaggagatcgccgc 261

                                                                       
Query: 199 ggagctccaggggaagaagcgcttcgacatggatccccctgtcggtcccttcggtaccaa 258
            |||||||||||||||||| | || || |||||  | || ||||| ||||| ||||||||
Sbjct: 262 cgagctccaggggaagaagaggtttgatatggacgcgcccgtcgggccctttggtaccaa 321

                                                                       
Query: 259 ggaggcgccagctgtcattgagtcctattttgacaagagaatagtaggttgccctggtga 318
           ||| || |||||||| ||| |||| || |   |||| || || || ||||| || |||| 
Sbjct: 322 ggaagctccagctgttattcagtcatactacaacaaaaggattgttggttgtcccggtgg 381

                                                                       
Query: 319 tgaaggagaggatgagcatgatctcgtatggttctggtt-gaaaaagatgagccgcatga 377
           |||||||||||| ||||||||| |||| ||||| ||||| || ||||   |||| |||||
Sbjct: 382 tgaaggagaggacgagcatgatgtcgtgtggttttggttggagaaaggcaagccacatga 441

                        
Query: 378 atgcccagtctgc 390
           |||||| ||||||
Sbjct: 442 atgccctgtctgc 454
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                            
Query: 146      gtggaggatgtcatgcccatagccacggggttggagcgcgaggagctcgaggcggagctc 205
                |||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 24251849 gtggaggacgtcatgcccatcgccacggggctggagcgcgaggagctcgcggcggagctc 24251908



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 61/66 (92%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                            
Query: 325      agaggatgagcatgatctcgtatggttctggttg-aaaaagatgagccgcatgaatgccc 383
                |||||||||||||||| | ||||||||||||||| |||||||||| |||||||| |||||
Sbjct: 24255403 agaggatgagcatgatgttgtatggttctggttgaaaaaagatgaaccgcatgagtgccc 24255462

                      
Query: 384      agtctg 389
                ||||||
Sbjct: 24255463 agtctg 24255468



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                            
Query: 258      aggaggcgccagctgtcattgagtcctattttgacaagagaatagtaggttgccctggtg 317
                ||||||| |||||||||||||| ||||| | | ||||||| ||||| ||||| |||||||
Sbjct: 24255242 aggaggccccagctgtcattgaatcctactataacaagaggatagttggttgtcctggtg 24255301

                         
Query: 318      atgaaggag 326
                 ||||||||
Sbjct: 24255302 gtgaaggag 24255310



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                       
Query: 206      caggggaagaagcgcttcgacatggatccccctgtcggtcccttcggtaccaagg 260
                |||||| ||||||| |||||||||||||| || || || || || ||||||||||
Sbjct: 24252033 cagggggagaagcggttcgacatggatcctcccgtaggcccatttggtaccaagg 24252087



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 183      gcgaggagctcgaggcggagctcc 206
                |||||||||||||| |||||||||
Sbjct: 22602327 gcgaggagctcgagccggagctcc 22602350
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>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0046B10
          Length = 142596

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                         
Query: 146   gtggaggatgtcatgcccatagccacggggttggagcgcgaggagctcgaggcggagctc 205
             |||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 76413 gtggaggacgtcatgcccatcgccacggggctggagcgcgaggagctcgcggcggagctc 76472



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 61/66 (92%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                         
Query: 325   agaggatgagcatgatctcgtatggttctggttg-aaaaagatgagccgcatgaatgccc 383
             |||||||||||||||| | ||||||||||||||| |||||||||| |||||||| |||||
Sbjct: 79967 agaggatgagcatgatgttgtatggttctggttgaaaaaagatgaaccgcatgagtgccc 80026

                   
Query: 384   agtctg 389
             ||||||
Sbjct: 80027 agtctg 80032



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                         
Query: 258   aggaggcgccagctgtcattgagtcctattttgacaagagaatagtaggttgccctggtg 317
             ||||||| |||||||||||||| ||||| | | ||||||| ||||| ||||| |||||||
Sbjct: 79806 aggaggccccagctgtcattgaatcctactataacaagaggatagttggttgtcctggtg 79865

                      
Query: 318   atgaaggag 326
              ||||||||
Sbjct: 79866 gtgaaggag 79874



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                    
Query: 206   caggggaagaagcgcttcgacatggatccccctgtcggtcccttcggtaccaagg 260
             |||||| ||||||| |||||||||||||| || || || || || ||||||||||
Sbjct: 76597 cagggggagaagcggttcgacatggatcctcccgtaggcccatttggtaccaagg 76651
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>dbj|D85381.1| Oryza sativa (japonica cultivar-group) mitochondrial DNA for
           cytochrome c oxidase subunit Vb precursor, complete cds
          Length = 5107

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                       
Query: 146 gtggaggatgtcatgcccatagccacggggttggagcgcgaggagctcgaggcggagctc 205
           |||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 481 gtggaggacgtcatgcccatcgccacggggctggagcgcgaggagctcgcggcggagctc 540



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 61/66 (92%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                        
Query: 325  agaggatgagcatgatctcgtatggttctggttg-aaaaagatgagccgcatgaatgccc 383
            |||||||||||||||| | ||||||||||||||| |||||||||| |||||||| |||||
Sbjct: 4035 agaggatgagcatgatgttgtatggttctggttgaaaaaagatgaaccgcatgagtgccc 4094

                  
Query: 384  agtctg 389
            ||||||
Sbjct: 4095 agtctg 4100



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                        
Query: 258  aggaggcgccagctgtcattgagtcctattttgacaagagaatagtaggttgccctggtg 317
            ||||||| |||||||||||||| ||||| | | ||||||| ||||| ||||| |||||||
Sbjct: 3874 aggaggccccagctgtcattgaatcctactataacaagaggatagttggttgtcctggtg 3933

                     
Query: 318  atgaaggag 326
             ||||||||
Sbjct: 3934 gtgaaggag 3942



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                  
Query: 206 caggggaagaagcgcttcgacatggatccccctgtcggtcccttcggtaccaagg 260
           |||||| ||||||| |||||||||||||| || || || || || ||||||||||
Sbjct: 665 cagggggagaagcggttcgacatggatcctcccgtaggcccatttggtaccaagg 719
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>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0410E01
          Length = 166753

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 61/66 (92%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                        
Query: 325  agaggatgagcatgatctcgtatggttctggttg-aaaaagatgagccgcatgaatgccc 383
            |||||||||||||||| | ||||||||||||||| |||||||||| |||||||| |||||
Sbjct: 1307 agaggatgagcatgatgttgtatggttctggttgaaaaaagatgaaccgcatgagtgccc 1366

                  
Query: 384  agtctg 389
            ||||||
Sbjct: 1367 agtctg 1372



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                        
Query: 258  aggaggcgccagctgtcattgagtcctattttgacaagagaatagtaggttgccctggtg 317
            ||||||| |||||||||||||| ||||| | | ||||||| ||||| ||||| |||||||
Sbjct: 1146 aggaggccccagctgtcattgaatcctactataacaagaggatagttggttgtcctggtg 1205

                     
Query: 318  atgaaggag 326
             ||||||||
Sbjct: 1206 gtgaaggag 1214
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>ref|NM_106672.3| Arabidopsis thaliana cytochrome-c oxidase AT1G80230 mRNA, complete
           cds
          Length = 937

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 290 gacaagagaatagtaggttgccctggtgatgaaggagaggatgagcatgat 340
           |||| ||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct: 440 gacatgagaatagttggttgccctggaggtgaaggagaggatgagcatgat 490
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>gb|BT006403.1| Arabidopsis thaliana At1g80230 gene, complete cds
          Length = 516

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 290 gacaagagaatagtaggttgccctggtgatgaaggagaggatgagcatgat 340
           |||| ||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct: 343 gacatgagaatagttggttgccctggaggtgaaggagaggatgagcatgat 393
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>gb|AY086953.1| Arabidopsis thaliana clone 29901 mRNA, complete sequence
          Length = 825

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 290 gacaagagaatagtaggttgccctggtgatgaaggagaggatgagcatgat 340
           |||| ||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct: 440 gacatgagaatagttggttgccctggaggtgaaggagaggatgagcatgat 490
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>emb|BX817450.1|CNS0AEEM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL23ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 910

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 290 gacaagagaatagtaggttgccctggtgatgaaggagaggatgagcatgat 340
           |||| ||||||||| ||||||||||| | ||||||||| ||||||||||||
Sbjct: 401 gacatgagaatagttggttgccctggaggtgaaggagaagatgagcatgat 451
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>gb|AF053560.1|AF053560 Mesembryanthemum crystallinum cytochrome c oxidase subunit Vb
           precursor (cox Vb) mRNA, partial cds
          Length = 375

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 179 gagcgcgaggagctcgaggcggagctccaggggaag 214
           |||||||||||||| ||||| ||||| |||||||||
Sbjct: 271 gagcgcgaggagcttgaggctgagcttcaggggaag 306
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                           
Query: 139     gacgagtgtggaggatgtcatgcccatagccacggggttggagcgcgaggagctcgaggc 198
               |||||| |||||||| || ||||| || ||||| ||| | |||||||||||| |||  ||
Sbjct: 2245386 gacgagggtggaggacgtgatgccgatcgccaccgggctcgagcgcgaggagatcgccgc 2245327

                          
Query: 199     ggagctccagg 209
                ||||||||||
Sbjct: 2245326 cgagctccagg 2245316



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                               
Query: 69      tctccacggcggtcgcggccttccgccgcactgcccctctcctctccg 116
               ||||||||| || ||| ||||||||||||||   ||||||||| ||||
Sbjct: 8030380 tctccacggtggccgccgccttccgccgcaccagccctctcctgtccg 8030427
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>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0535G04
          Length = 154180

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                          
Query: 139    gacgagtgtggaggatgtcatgcccatagccacggggttggagcgcgaggagctcgaggc 198
              |||||| |||||||| || ||||| || ||||| ||| | |||||||||||| |||  ||
Sbjct: 104843 gacgagggtggaggacgtgatgccgatcgccaccgggctcgagcgcgaggagatcgccgc 104784

                         
Query: 199    ggagctccagg 209
               ||||||||||
Sbjct: 104783 cgagctccagg 104773
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>emb|BX323857.16| Mouse DNA sequence from clone RP23-12C2 on chromosome 4, complete
             sequence
          Length = 104942

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 308   tgccctggtgatgaaggagagg 329
             ||||||||||||||||||||||
Sbjct: 66438 tgccctggtgatgaaggagagg 66459
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>emb|AJ011571.1|CPA011571 Cyanophora paradoxa mRNA for hypothetical protein, partial
          Length = 386

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 184 cgaggagctcgaggcggagctc 205
           ||||||||||||||||||||||
Sbjct: 146 cgaggagctcgaggcggagctc 167
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>gb|AC132451.3| Mus musculus BAC clone RP23-194C20 from chromosome 8, complete sequence
          Length = 188539

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 150    aggatgtcatgcccatagcca 170
              |||||||||||||||||||||
Sbjct: 154074 aggatgtcatgcccatagcca 154054
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>ref|XM_812303.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053509937.20) partial mRNA
          Length = 1788

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 144  gtgtggaggatgtcatgcccatagc 168
            |||||||||||||| ||||||||||
Sbjct: 1542 gtgtggaggatgtcttgcccatagc 1566
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>gb|AC126013.12| Medicago truncatula clone mth2-32e10, complete sequence
          Length = 116778

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 286   ttttgacaagagaatagtagg 306
             |||||||||||||||||||||
Sbjct: 93748 ttttgacaagagaatagtagg 93728
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>emb|CR394562.10| Zebrafish DNA sequence from clone CH211-284D14 in linkage group 8,
             complete sequence
          Length = 134514

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 321   aaggagaggatgagcatgatc 341
             |||||||||||||||||||||
Sbjct: 85415 aaggagaggatgagcatgatc 85395
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>gb|AC130811.22| Medicago truncatula clone mth2-26b4, complete sequence
          Length = 139970

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 286   ttttgacaagagaatagtagg 306
             |||||||||||||||||||||
Sbjct: 88774 ttttgacaagagaatagtagg 88794
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>gb|AY603753.2| Danio rerio obscurin-MLCK mRNA, partial cds
          Length = 6031

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 321  aaggagaggatgagcatgatc 341
            |||||||||||||||||||||
Sbjct: 3729 aaggagaggatgagcatgatc 3749
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>gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete
              sequence
          Length = 116905

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 290    gacaagagaatagtaggttgccctggtgatgaaggag 326
              |||| ||||||||| ||||||||||| | ||||||||
Sbjct: 106911 gacatgagaatagttggttgccctggaggtgaaggag 106875
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 180     agcgcgaggagctcgaggcgg 200
               |||||||||||||||||||||
Sbjct: 3327244 agcgcgaggagctcgaggcgg 3327224
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 75     cggcggtcgcggccttccgcc 95
              |||||||||||||||||||||
Sbjct: 919772 cggcggtcgcggccttccgcc 919752
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>ref|XM_463361.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1656

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 183  gcgaggagctcgaggcggagctcc 206
            |||||||||||||| |||||||||
Sbjct: 1505 gcgaggagctcgagccggagctcc 1528
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>gb|AC145320.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041K10
              map near E50283S, complete sequence
          Length = 140651

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 121    caagccggcggcggcagcgacgag 144
              ||||||||| ||||||||||||||
Sbjct: 101574 caagccggcagcggcagcgacgag 101551
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 313   tggtgatgaaggagaggatgagca 336
             ||||||||||||||||| ||||||
Sbjct: 91190 tggtgatgaaggagaggttgagca 91167
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>gb|AY129337.1| Mycobacteriophage Bxz1, complete genome
          Length = 156102

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    ccacggcggtcgcggccttc 91
             ||||||||||||||||||||
Sbjct: 10619 ccacggcggtcgcggccttc 10600
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>gb|AC158674.10| Mus musculus 6 BAC RP23-54E12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 211124

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    aggttgccctggtgatgaag 323
              ||||||||||||||||||||
Sbjct: 209948 aggttgccctggtgatgaag 209929
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>emb|BX897656.9| Zebrafish DNA sequence from clone CH211-271K12, complete sequence
          Length = 141840

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    gtatggttctggttgaaaaa 363
              ||||||||||||||||||||
Sbjct: 130003 gtatggttctggttgaaaaa 130022
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     gcggtcgcggccttccgccg 96
              ||||||||||||||||||||
Sbjct: 623202 gcggtcgcggccttccgccg 623221
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 121      caagccggcggcggcagcgacgag 144
                ||||||||| ||||||||||||||
Sbjct: 13610338 caagccggcagcggcagcgacgag 13610315
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>gb|AC008915.11| Homo sapiens chromosome 16 clone CTD-2270L9, complete sequence
          Length = 135873

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   ccctggtgatgaaggagagg 329
             ||||||||||||||||||||
Sbjct: 50696 ccctggtgatgaaggagagg 50715
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 181     gcgcgaggagctcgaggcggagct 204
               ||||||||||||| ||||||||||
Sbjct: 2953158 gcgcgaggagctccaggcggagct 2953135
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>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1097D05
          Length = 144879

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 183    gcgaggagctcgaggcggagctcc 206
              |||||||||||||| |||||||||
Sbjct: 118064 gcgaggagctcgagccggagctcc 118087
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>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0046H10
          Length = 155544

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                              
Query: 69     tctccacggcggtcgcggccttccgccgcactgcccctctcctctccg 116
              ||||||||| || ||| ||||||||||||||   ||||||||| ||||
Sbjct: 137898 tctccacggtggccgccgccttccgccgcaccagccctctcctgtccg 137945
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>dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0592E11
          Length = 153734

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 69    tctccacggcggtcgcggccttccgccgcactgcccctctcctctccg 116
             ||||||||| || ||| ||||||||||||||   ||||||||| ||||
Sbjct: 54149 tctccacggtggccgccgccttccgccgcaccagccctctcctgtccg 54196
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>gb|AC157097.5| Mus musculus 6 BAC RP24-369M3 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 206335

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    aggttgccctggtgatgaag 323
              ||||||||||||||||||||
Sbjct: 141568 aggttgccctggtgatgaag 141587
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>gb|DQ229268.1| Phytophthora sojae elicitin-like protein SOL1D pseudogene, complete
           sequence
          Length = 737

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 185 gaggagctcgaggcggagct 204
           ||||||||||||||||||||
Sbjct: 328 gaggagctcgaggcggagct 309
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>emb|CT009727.7| Zebrafish DNA sequence from clone CH73-40M17 in linkage group 22,
            complete sequence
          Length = 19538

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 344  gtatggttctggttgaaaaa 363
            ||||||||||||||||||||
Sbjct: 2733 gtatggttctggttgaaaaa 2752
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 121      caagccggcggcggcagcgacgag 144
                ||||||||| ||||||||||||||
Sbjct: 13690517 caagccggcagcggcagcgacgag 13690494


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,742,343
Number of Sequences: 3902068
Number of extensions: 2742343
Number of successful extensions: 62391
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61685
Number of HSP's gapped (non-prelim): 693
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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