ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast65g01 |
|---|---|
| Clone Library Name | barley_pub |
>MA1C1_HUMAN (Q9NR34) Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC (EC| 3.2.1.113) (Processing alpha-1,2-mannosidase IC) (Alpha-1,2-mannosidase IC) (Mannosidase alpha class 1C member 1) (HMIC) Length = 630 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +1 Query: 121 PAPSSSTPSRWASPVSTRWTRARSAPSGWRATATSS 228 PAP PS WASP + R+ P+G R AT++ Sbjct: 89 PAPGEDDPSSWASPRRRKGGLRRTRPTGPREEATAA 124
>PDE3A_RAT (Q62865) cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC| 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A) (CGI-PDE A) Length = 1141 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +1 Query: 112 HLWPAPSSSTPSRWASPVSTRWTRARSAPSGWRATATS 225 H P+PS+ P W +PV T++RS S + +A + Sbjct: 466 HEAPSPSAVNPDSWNAPVLMTLTKSRSFTSSYAVSAAN 503
>MUC1_YEAST (P08640) Mucin-like protein 1 precursor| Length = 1367 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = +1 Query: 121 PAPSSSTPSRWASPVSTRWTRARSAPSGWRATATSSCTE 237 P PSSST ++PV++ T + SAP T +SS TE Sbjct: 738 PTPSSSTTESSSAPVTSSTTESSSAPV---PTPSSSTTE 773 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 121 PAPSSSTPSRWASPVSTRWTRARSAPSGWRATATSS 228 P PSSST ++PV++ T + SAP T +SS Sbjct: 669 PTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSS 704 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = +1 Query: 121 PAPSSSTPSRWASPVSTRWTRARSAPSGWRATATSSCTE 237 P PSSST ++PV++ T + SAP T +SS TE Sbjct: 612 PTPSSSTTESSSAPVTSSTTESSSAPV---PTPSSSTTE 647 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = +1 Query: 121 PAPSSSTPSRWASPVSTRWTRARSAPSGWRATATSSCTE 237 P PSSST ++PV++ T + SAP T +SS TE Sbjct: 555 PTPSSSTTESSSTPVTSSTTESSSAPV---PTPSSSTTE 590 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = +1 Query: 121 PAPSSSTPSRWASPVSTRWTRARSAPSGWRATATSSCTE 237 P PSSST ++PV++ T + SAP T +SS TE Sbjct: 528 PTPSSSTTESSSAPVTSSTTESSSAPV---PTPSSSTTE 563 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = +1 Query: 121 PAPSSSTPSRWASPVSTRWTRARSAPSGWRATATSSCTE 237 P PSSST ++PV++ T + SAP T +SS TE Sbjct: 486 PTPSSSTTESSSAPVTSSTTESSSAPV---PTPSSSTTE 521 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = +1 Query: 121 PAPSSSTPSRWASPVSTRWTRARSAPSGWRATATSSCTE 237 P PSSST ++PV++ T + SAP T +SS TE Sbjct: 459 PTPSSSTTESSSAPVTSSTTESSSAPV---PTPSSSTTE 494 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 121 PAPSSSTPSRWASPVSTRWTRARSAPSGWRATATSS 228 P PSSST ++PV++ T + SAP T +SS Sbjct: 396 PTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSS 431 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 121 PAPSSSTPSRWASPVSTRWTRARSAPSGWRATATSS 228 P PSSST ++PV++ T + SAP T +SS Sbjct: 357 PTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSS 392 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = +1 Query: 121 PAPSSSTPSRWASPVSTRWTRARSAPSGWRATATSSCTE 237 P PSSST ++PV++ T + SAP T +SS TE Sbjct: 330 PTPSSSTTESSSAPVTSSTTESSSAPV---PTPSSSTTE 365
>VILD_DICDI (Q8WQ85) Villidin| Length = 1704 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%) Frame = +1 Query: 121 PAPSSST---PSRWASPVSTRWTRARSAPSGWRATATSS 228 P+PSSST PS +ASP+S T + + + T TSS Sbjct: 661 PSPSSSTSTPPSTFASPLSIAQTSSTTTTTTTTTTTTSS 699
>YRU4_CAEEL (Q09350) Hypothetical protein T09B9.4| Length = 528 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/38 (31%), Positives = 23/38 (60%) Frame = -3 Query: 275 LVAALLAAEGRVPSVHEDVAVARQPLGAERARVQRVLT 162 L +L+A ++P VH D A A + + ++A ++R+ T Sbjct: 220 LTKSLMANVAKIPDVHGDEAAAEKLMADKQAEIERLRT 257
>PORIM_MOUSE (Q91Z22) Porimin precursor (Transmembrane protein 123)| Length = 195 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +1 Query: 112 HLWPAPSSSTPSRWASPVSTRWTRARSAP--SGWRATATSSCT 234 H+ P S STP+ ASP ST + + + P S T T S T Sbjct: 98 HVTPTASKSTPNASASPNSTHTSASMTTPAHSSLLTTVTVSAT 140
>RD23D_ARATH (Q84L30) Putative DNA repair protein RAD23-4 (RAD23-like protein 4)| (AtRAD23-4) Length = 378 Score = 27.7 bits (60), Expect = 6.9 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Frame = +1 Query: 28 ERNQEQQRAVTSNLL*ISLSLCRAIPWRHLW---PAPSSSTPSRWASPVSTRWTRARSAP 198 E E+ V ++ + I LS +A P PAPS++ P A+P + T + P Sbjct: 55 ETTLEENNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVP 114 Query: 199 SGWRATATSSCT 234 + ATA + T Sbjct: 115 TSGTATAAAPAT 126
>CXX1_HUMAN (O15255) CAAX box protein 1 (Cerebral protein 5)| Length = 209 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = +1 Query: 85 SLCRAIPWRHLWPAPSSSTPSRWASPVSTRWTRARSAPSGW 207 S CR PW LW P S PS +P WT + + + W Sbjct: 72 SCCR--PWASLWSEPPPS-PSSQPAPPMYIWTLSCAPAASW 109
>FABH_CAUCR (Q9A8I4) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase III) (Beta-ketoacyl-ACP synthase III) (KAS III) Length = 322 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/16 (62%), Positives = 14/16 (87%) Frame = -3 Query: 176 QRVLTGLAHRLGVEEE 129 QR+L G+AHR G++EE Sbjct: 253 QRILQGVAHRCGIDEE 268
>EDG4_MACFA (Q95KH4) Lysophosphatidic acid receptor Edg-4 (LPA receptor 2)| (LPA-2) Length = 351 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -1 Query: 352 WHSASAVNRCSRRAACLAQAASSRICSWRHSSL 254 WH A++RCSR A L++ S + W SSL Sbjct: 169 WHCLCALDRCSRMAPLLSR---SYLAVWALSSL 198
>EDG4_HUMAN (Q9HBW0) Lysophosphatidic acid receptor Edg-4 (LPA receptor 2)| (LPA-2) Length = 351 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -1 Query: 352 WHSASAVNRCSRRAACLAQAASSRICSWRHSSL 254 WH A++RCSR A L++ S + W SSL Sbjct: 169 WHCLCALDRCSRMAPLLSR---SYLAVWALSSL 198
>RL32_SULSO (Q9UX90) 50S ribosomal protein L32e| Length = 138 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = -3 Query: 251 EGRVPSVHEDVAVARQPLGAERARVQRVLTGLAHRLGVEEE 129 EGR+ S + + V RQ L A++ + R + +RLG +E+ Sbjct: 3 EGRIQSYRKKIYVIRQKLKAKKPKFLRYDSDKFYRLGRQEK 43
>SORT_RAT (O54861) Sortilin precursor (Neurotensin receptor 3) (NTR3)| (Glycoprotein 110) (Gp110) Length = 825 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = +1 Query: 121 PAPSSSTPSRWASPVSTRWTRARSAPSG 204 P P + RWA PV W +AP G Sbjct: 38 PPPPAPPLLRWAGPVGVSWGLRAAAPGG 65
>SORT_MOUSE (Q6PHU5) Sortilin precursor (Neurotensin receptor 3) (NTR3) (mNTR3)| Length = 825 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = +1 Query: 121 PAPSSSTPSRWASPVSTRWTRARSAPSG 204 P P + RWA PV W +AP G Sbjct: 38 PPPPAPPLLRWAGPVGVSWGLRAAAPGG 65
>Y215_ADE02 (P03291) Hypothetical protein F-215| Length = 215 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +1 Query: 103 PWRHLWPAPSSSTPSRWASPVSTRWTRARSAPS 201 P R WPA +++P W+ P + R RS+ S Sbjct: 19 PSRSSWPASPTTSPPPWSEPDAEISRRKRSSSS 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,534,448 Number of Sequences: 219361 Number of extensions: 506687 Number of successful extensions: 2023 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1940 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2020 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
