ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast65f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472805.1| Oryza sativa (japonica cultivar-group), predic... 281 9e-73
2emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4,... 167 4e-38
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
4dbj|AP006125.1| Lotus japonicus genomic DNA, chromosome 2, clone... 52 0.002
5gb|AC152751.22| Medicago truncatula clone mth2-18n7, complete se... 50 0.006
6gb|AC121309.10| Mus musculus chromosome 3, clone RP24-303N8, com... 42 1.4
7gb|AC113007.11| Mus musculus chromosome 3, clone RP23-349H13, co... 42 1.4
8dbj|AB053089.1| Nicotiana tabacum TBK1 mRNA for kinesin-like pol... 42 1.4
9ref|NM_106046.3| Arabidopsis thaliana ATP binding / microtubule ... 40 5.7
10ref|NM_180144.1| Arabidopsis thaliana ATP binding / microtubule ... 40 5.7
11gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 40 5.7
12gb|AC159408.1| Trypanosoma brucei chromosome 7 clone RPCI93-13M2... 40 5.7
13gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence 40 5.7
14ref|XM_818560.1| Trypanosoma brucei TREU927 clone RPCI93-13M20 k... 40 5.7
15emb|AL590041.9| Human DNA sequence from clone RP13-436D9 on chro... 40 5.7
16emb|AL133351.34| Human DNA sequence from clone RP1-90J20 on chro... 40 5.7
17gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B22 ma... 40 5.7
18gb|AC138472.3| Homo sapiens chromosome 19 clone CTC-419E6, compl... 40 5.7
19gb|AC016662.7|AC016662 Arabidopsis thaliana chromosome 1 BAC F2P... 40 5.7
20gb|AC012679.5|AC012679 Arabidopsis thaliana chromosome 1 BAC F25... 40 5.7
21gb|BT004088.1| Arabidopsis thaliana clone RAFL15-38-I17 (R20911)... 40 5.7
22gb|AC092573.2| Homo sapiens BAC clone RP11-1O7 from 2, complete ... 40 5.7
23gb|AC073898.1|AC073898 Homo sapiens chromosome 19 BAC BC311202 (... 40 5.7
24dbj|AK065361.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
25emb|AL954140.7| Mouse DNA sequence from clone RP23-52I15 on chro... 40 5.7
26gb|AF015922.1|AF015922 Arabidopsis thaliana fumerase (FUM) gene,... 40 5.7 
>ref|XM_472805.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4392

 Score =  281 bits (142), Expect = 9e-73
 Identities = 324/385 (84%)
 Strand = Plus / Plus

                                                                        
Query: 42   aacaattctcatgtaaatggactcaacatccctgatgccaatttagtgcctgtgaagtgc 101
            |||| |||||||||||||||||| |||||||| ||||| |||||||| || |||||||| 
Sbjct: 1486 aacagttctcatgtaaatggactgaacatcccagatgcaaatttagttccagtgaagtgt 1545

                                                                        
Query: 102  acaaaggatgttttggacctgatgaaacttggccacagaaatcgggctgtcggagcgact 161
             || |||| ||||||||  |||||| | |||||||||| ||  |||| || ||  | |||
Sbjct: 1546 gcacaggacgttttggatttgatgagagttggccacaggaacagggcagttgggtctact 1605

                                                                        
Query: 162  gctcttaatgaacgaagtagccgctcacacagtgtgttgacagttcatgtgcaagggaag 221
            |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 1606 gctcttaatgaacgaagtagtcgctcacacagtgtgttgacagttcatgttcaaggcaag 1665

                                                                        
Query: 222  gagataatttctggttcaactttaagaggttgccttcacctagtggatctcgcgggaagt 281
            ||||||  ||| || |||||| ||||||| |||||||| || |||||||| |||||||||
Sbjct: 1666 gagatagcttcggggtcaactctaagaggatgccttcatcttgtggatcttgcgggaagt 1725

                                                                        
Query: 282  gagagggtggacaaatctgaggccgccggagaacgactgactgaagccaagcacatcaac 341
            ||  ||||||| || || |||||||| |||||| || | |  ||||| || || || |||
Sbjct: 1726 gaacgggtggataagtccgaggccgctggagaaagattaaacgaagcaaaacatataaac 1785

                                                                        
Query: 342  anatcactatcggcacttggcgatgttatagcggcactagcccagaagagttcacacgtt 401
            | |||||| || |||||||| ||||||||||| ||||| ||||| ||||| || ||||| 
Sbjct: 1786 aaatcactgtccgcacttggtgatgttatagctgcacttgcccaaaagagctcccacgtc 1845

                                     
Query: 402  ccataccgcaacagcaagctaacac 426
            |||||||| || |||||||||||||
Sbjct: 1846 ccataccgaaatagcaagctaacac 1870
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>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02,
             complete sequence
          Length = 167988

 Score =  167 bits (84), Expect = 4e-38
 Identities = 197/235 (83%)
 Strand = Plus / Minus

                                                                         
Query: 192   agtgtgttgacagttcatgtgcaagggaaggagataatttctggttcaactttaagaggt 251
             |||||||||||||||||||| ||||| |||||||||  ||| || |||||| ||||||| 
Sbjct: 66584 agtgtgttgacagttcatgttcaaggcaaggagatagcttcggggtcaactctaagagga 66525

                                                                         
Query: 252   tgccttcacctagtggatctcgcgggaagtgagagggtggacaaatctgaggccgccgga 311
             |||||||| || |||||||| |||||||||||  ||||||| || || |||||||| |||
Sbjct: 66524 tgccttcatcttgtggatcttgcgggaagtgaacgggtggataagtccgaggccgctgga 66465

                                                                         
Query: 312   gaacgactgactgaagccaagcacatcaacanatcactatcggcacttggcgatgttata 371
             ||| || | |  ||||| || || || |||| |||||| || |||||||| |||||||||
Sbjct: 66464 gaaagattaaacgaagcaaaacatataaacaaatcactgtccgcacttggtgatgttata 66405

                                                                    
Query: 372   gcggcactagcccagaagagttcacacgttccataccgcaacagcaagctaacac 426
             || ||||| ||||| ||||| || ||||| |||||||| || |||||||||||||
Sbjct: 66404 gctgcacttgcccaaaagagctcccacgtcccataccgaaatagcaagctaacac 66350



 Score =  121 bits (61), Expect = 2e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                         
Query: 33    gagattcgtaacaattctcatgtaaatggactcaacatccctgatgccaatttagtgcct 92
             ||||| || |||| |||||||||||||||||| |||||||| ||||| |||||||| || 
Sbjct: 66886 gagatacgaaacagttctcatgtaaatggactgaacatcccagatgcaaatttagttcca 66827

                                                                         
Query: 93    gtgaagtgcacaaaggatgttttggacctgatgaaacttggccacagaaatcgggctgtc 152
             ||||||||  || |||| ||||||||  |||||| | |||||||||| ||  |||| || 
Sbjct: 66826 gtgaagtgtgcacaggacgttttggatttgatgagagttggccacaggaacagggcagtt 66767

                                                      
Query: 153   ggagcgactgctcttaatgaacgaagtagccgctcacacag 193
             ||  | ||||||||||||||||||||||| |||||||||||
Sbjct: 66766 gggtctactgctcttaatgaacgaagtagtcgctcacacag 66726
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  167 bits (84), Expect = 4e-38
 Identities = 197/235 (83%)
 Strand = Plus / Minus

                                                                            
Query: 192      agtgtgttgacagttcatgtgcaagggaaggagataatttctggttcaactttaagaggt 251
                |||||||||||||||||||| ||||| |||||||||  ||| || |||||| ||||||| 
Sbjct: 23349263 agtgtgttgacagttcatgttcaaggcaaggagatagcttcggggtcaactctaagagga 23349204

                                                                            
Query: 252      tgccttcacctagtggatctcgcgggaagtgagagggtggacaaatctgaggccgccgga 311
                |||||||| || |||||||| |||||||||||  ||||||| || || |||||||| |||
Sbjct: 23349203 tgccttcatcttgtggatcttgcgggaagtgaacgggtggataagtccgaggccgctgga 23349144

                                                                            
Query: 312      gaacgactgactgaagccaagcacatcaacanatcactatcggcacttggcgatgttata 371
                ||| || | |  ||||| || || || |||| |||||| || |||||||| |||||||||
Sbjct: 23349143 gaaagattaaacgaagcaaaacatataaacaaatcactgtccgcacttggtgatgttata 23349084

                                                                       
Query: 372      gcggcactagcccagaagagttcacacgttccataccgcaacagcaagctaacac 426
                || ||||| ||||| ||||| || ||||| |||||||| || |||||||||||||
Sbjct: 23349083 gctgcacttgcccaaaagagctcccacgtcccataccgaaatagcaagctaacac 23349029



 Score =  121 bits (61), Expect = 2e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                            
Query: 33       gagattcgtaacaattctcatgtaaatggactcaacatccctgatgccaatttagtgcct 92
                ||||| || |||| |||||||||||||||||| |||||||| ||||| |||||||| || 
Sbjct: 23349565 gagatacgaaacagttctcatgtaaatggactgaacatcccagatgcaaatttagttcca 23349506

                                                                            
Query: 93       gtgaagtgcacaaaggatgttttggacctgatgaaacttggccacagaaatcgggctgtc 152
                ||||||||  || |||| ||||||||  |||||| | |||||||||| ||  |||| || 
Sbjct: 23349505 gtgaagtgtgcacaggacgttttggatttgatgagagttggccacaggaacagggcagtt 23349446

                                                         
Query: 153      ggagcgactgctcttaatgaacgaagtagccgctcacacag 193
                ||  | ||||||||||||||||||||||| |||||||||||
Sbjct: 23349445 gggtctactgctcttaatgaacgaagtagtcgctcacacag 23349405
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>dbj|AP006125.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT43I02, TM0210a,
             complete sequence
          Length = 55211

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 255   cttcacctagtggatctcgcgggaagtgagagggtggacaaatctgaggc 304
             ||||| || |||||| | || ||||||||||| |||||||||||||||||
Sbjct: 40005 cttcatcttgtggatttggctggaagtgagagagtggacaaatctgaggc 39956
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>gb|AC152751.22| Medicago truncatula clone mth2-18n7, complete sequence
          Length = 117170

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 276   ggaagtgagagggtggacaaatctgaggc 304
             |||||||||||||| ||||||||||||||
Sbjct: 87743 ggaagtgagagggtcgacaaatctgaggc 87771
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>gb|AC121309.10| Mus musculus chromosome 3, clone RP24-303N8, complete sequence
          Length = 179337

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 84   ttagtgcctgtgaagtgcaca 104
            |||||||||||||||||||||
Sbjct: 3552 ttagtgcctgtgaagtgcaca 3532
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>gb|AC113007.11| Mus musculus chromosome 3, clone RP23-349H13, complete sequence
          Length = 180852

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 84   ttagtgcctgtgaagtgcaca 104
            |||||||||||||||||||||
Sbjct: 6884 ttagtgcctgtgaagtgcaca 6904
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>dbj|AB053089.1| Nicotiana tabacum TBK1 mRNA for kinesin-like polypeptides 1,
           partial cds
          Length = 471

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 165 cttaatgaacgaagtagccgctcacacagtgtgttgacagttcatgtgcaagg 217
           |||||||| || ||||||||||| ||||||    ||||||||||||| |||||
Sbjct: 355 cttaatgaccgcagtagccgctcccacagttgcctgacagttcatgtccaagg 407
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>ref|NM_106046.3| Arabidopsis thaliana ATP binding / microtubule motor AT1G73860 mRNA,
            complete cds
          Length = 3475

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 387  aagagttcacacgttccataccgcaacagcaagctaacac 426
            |||||||| || || |||||| | ||||||||||||||||
Sbjct: 2545 aagagttctcatgtaccatacagaaacagcaagctaacac 2584
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>ref|NM_180144.1| Arabidopsis thaliana ATP binding / microtubule motor AT2G47500 mRNA,
            complete cds
          Length = 3451

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 264  gtggatctcgcgggaagtgagagggtggacaaatctgagg 303
            |||||||| || || ||||||||||| |||||||| ||||
Sbjct: 2110 gtggatctagcaggcagtgagagggtagacaaatccgagg 2149
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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      gtggtggctgatggtgcaaa 22
              ||||||||||||||||||||
Sbjct: 637538 gtggtggctgatggtgcaaa 637557
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>gb|AC159408.1| Trypanosoma brucei chromosome 7 clone RPCI93-13M20, complete sequence
          Length = 162223

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   gtggatctcgcgggaagtga 283
             ||||||||||||||||||||
Sbjct: 89075 gtggatctcgcgggaagtga 89056
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>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence
          Length = 2205233

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    gtggatctcgcgggaagtga 283
              ||||||||||||||||||||
Sbjct: 754562 gtggatctcgcgggaagtga 754581
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>ref|XM_818560.1| Trypanosoma brucei TREU927 clone RPCI93-13M20 kinesin (Tb927.7.3000)
            partial mRNA
          Length = 4029

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 264  gtggatctcgcgggaagtga 283
            ||||||||||||||||||||
Sbjct: 1168 gtggatctcgcgggaagtga 1187
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>emb|AL590041.9| Human DNA sequence from clone RP13-436D9 on chromosome X Contains the
             TGIF2LX gene for TGFB-induced factor 2-like, X-linked,
             complete sequence
          Length = 145184

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   cttcacctagtggatctcgc 274
             ||||||||||||||||||||
Sbjct: 72494 cttcacctagtggatctcgc 72513
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>emb|AL133351.34| Human DNA sequence from clone RP1-90J20 on chromosome 6p24.1-25.3
             Contains the 5' end of a putative novel gene, the SERPINB9
             gene for serine (or cysteine) proteinase inhibitor clade B
             (ovalbumin) member 9, a novel gene, the SERPINB6 gene for
             serine (or cysteine) proteinase inhibitor clade B
             (ovalbumin) member 6, three putative novel genes, the gene
             for NAD(P)H dehydrogenase quinone 2 (NQO2) and eight
             predicted CpG islands, complete sequence
          Length = 173670

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   cttcacctagtggatctcgc 274
             ||||||||||||||||||||
Sbjct: 72233 cttcacctagtggatctcgc 72214
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>gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete
             sequence
          Length = 98937

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 264   gtggatctcgcgggaagtgagagggtggacaaatctgagg 303
             |||||||| || || ||||||||||| |||||||| ||||
Sbjct: 52194 gtggatctagcaggcagtgagagggtagacaaatccgagg 52155
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>gb|AC138472.3| Homo sapiens chromosome 19 clone CTC-419E6, complete sequence
          Length = 126238

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   cttcacctagtggatctcgc 274
             ||||||||||||||||||||
Sbjct: 77260 cttcacctagtggatctcgc 77241
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>gb|AC016662.7|AC016662 Arabidopsis thaliana chromosome 1 BAC F2P9 genomic sequence, complete
              sequence
          Length = 108387

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 387    aagagttcacacgttccataccgcaacagcaagctaacac 426
              |||||||| || || |||||| | ||||||||||||||||
Sbjct: 100876 aagagttctcatgtaccatacagaaacagcaagctaacac 100915
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>gb|AC012679.5|AC012679 Arabidopsis thaliana chromosome 1 BAC F25P22 genomic sequence, complete
              sequence
          Length = 105937

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 387    aagagttcacacgttccataccgcaacagcaagctaacac 426
              |||||||| || || |||||| | ||||||||||||||||
Sbjct: 100246 aagagttctcatgtaccatacagaaacagcaagctaacac 100207
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>gb|BT004088.1| Arabidopsis thaliana clone RAFL15-38-I17 (R20911) putative kinesin
            (At2g47500) mRNA, complete cds
          Length = 3494

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 264  gtggatctcgcgggaagtgagagggtggacaaatctgagg 303
            |||||||| || || ||||||||||| |||||||| ||||
Sbjct: 2137 gtggatctagcaggcagtgagagggtagacaaatccgagg 2176
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>gb|AC092573.2| Homo sapiens BAC clone RP11-1O7 from 2, complete sequence
          Length = 171265

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   cttcacctagtggatctcgc 274
             ||||||||||||||||||||
Sbjct: 27706 cttcacctagtggatctcgc 27725
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>gb|AC073898.1|AC073898 Homo sapiens chromosome 19 BAC BC311202 (CIT-HSPC_419E6), complete
             sequence
          Length = 125428

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   cttcacctagtggatctcgc 274
             ||||||||||||||||||||
Sbjct: 48162 cttcacctagtggatctcgc 48181
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>dbj|AK065361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013014A12, full
            insert sequence
          Length = 4008

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 399  gttccataccgcaacagcaagctaacac 426
            ||||||||| | ||||||||||||||||
Sbjct: 2961 gttccatacaggaacagcaagctaacac 2988
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>emb|AL954140.7| Mouse DNA sequence from clone RP23-52I15 on chromosome 4, complete
             sequence
          Length = 98087

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   atttctggttcaactttaag 247
             ||||||||||||||||||||
Sbjct: 74661 atttctggttcaactttaag 74680
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>gb|AF015922.1|AF015922 Arabidopsis thaliana fumerase (FUM) gene, 5' region and exon 1,
           complete sequence
          Length = 2580

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 264 gtggatctcgcgggaagtgagagggtggacaaatctgagg 303
           |||||||| || || ||||||||||| |||||||| ||||
Sbjct: 437 gtggatctagcaggcagtgagagggtagacaaatccgagg 476


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,948,031
Number of Sequences: 3902068
Number of extensions: 2948031
Number of successful extensions: 50975
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 50892
Number of HSP's gapped (non-prelim): 77
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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