ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast65f09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC132945.3| Mus musculus BAC clone RP24-321A15 from 8, complete sequence Length = 230047 Score = 46.1 bits (23), Expect = 0.064 Identities = 23/23 (100%) Strand = Plus / Minus Query: 72 gctctgctccccctccccgatcc 94 ||||||||||||||||||||||| Sbjct: 30938 gctctgctccccctccccgatcc 30916
>gb|AC140276.3| Mus musculus BAC clone RP23-336J13 from 8, complete sequence Length = 211518 Score = 46.1 bits (23), Expect = 0.064 Identities = 23/23 (100%) Strand = Plus / Plus Query: 72 gctctgctccccctccccgatcc 94 ||||||||||||||||||||||| Sbjct: 76518 gctctgctccccctccccgatcc 76540
>gb|AY023252.1| Oryza sativa microsatellite MRG5577 containing (GGA)X10, closest to marker R2754, genomic sequence Length = 230 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 31 ccgccgcgccgcgccgcaccac 52 |||||||||||||||||||||| Sbjct: 36 ccgccgcgccgcgccgcaccac 57
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 31 ccgccgcgccgcgccgcaccac 52 |||||||||||||||||||||| Sbjct: 80080 ccgccgcgccgcgccgcaccac 80101 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 ccgtctcctcctcgcccgctgctc 75 ||||||||||||||||| |||||| Sbjct: 189340 ccgtctcctcctcgccctctgctc 189363
>emb|AL731639.3|OSJN00288 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000315_02, complete sequence Length = 112404 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 35672 agccgccgcgccgcgccgcacc 35651
>emb|AL607005.3|OSJN00124 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0118P14, complete sequence Length = 158312 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 128431 agccgccgcgccgcgccgcacc 128410
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence Length = 147117 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 37194 agccgccgcgccgcgccgcacc 37215 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 37086 agccgccgcgccgcgccgcacc 37107
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 185 cgtcatccccgtcgaccgcctc 206 |||||||||||||||||||||| Sbjct: 3365741 cgtcatccccgtcgaccgcctc 3365762
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 20065768 agccgccgcgccgcgccgcacc 20065747 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gagccgccgcgccgcgccgc 47 |||||||||||||||||||| Sbjct: 25161007 gagccgccgcgccgcgccgc 25160988
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 19262288 agccgccgcgccgcgccgcacc 19262309 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 13078150 agccgccgcgccgcgccgcacc 13078129
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 21362181 agccgccgcgccgcgccgcacc 21362202 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 21362073 agccgccgcgccgcgccgcacc 21362094 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ccctccccgatccgatcgccg 102 ||||||||||||||||||||| Sbjct: 19371189 ccctccccgatccgatcgccg 19371169
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 31 ccgccgcgccgcgccgcaccac 52 |||||||||||||||||||||| Sbjct: 27999915 ccgccgcgccgcgccgcaccac 27999936 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 ccgccgtcgtcatccccgtcg 198 ||||||||||||||||||||| Sbjct: 18196712 ccgccgtcgtcatccccgtcg 18196692 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 ccgtctcctcctcgcccgctgctc 75 ||||||||||||||||| |||||| Sbjct: 28109175 ccgtctcctcctcgccctctgctc 28109198
>dbj|AK120605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013150C07, full insert sequence Length = 4157 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 31 ccgccgcgccgcgccgcaccac 52 |||||||||||||||||||||| Sbjct: 95 ccgccgcgccgcgccgcaccac 116
>dbj|AK102711.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033104N01, full insert sequence Length = 2464 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 31 ccgccgcgccgcgccgcaccac 52 |||||||||||||||||||||| Sbjct: 92 ccgccgcgccgcgccgcaccac 113
>dbj|AK066026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044F07, full insert sequence Length = 3108 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 31 ccgccgcgccgcgccgcaccac 52 |||||||||||||||||||||| Sbjct: 91 ccgccgcgccgcgccgcaccac 112
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 21373444 agccgccgcgccgcgccgcacc 21373465 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 21373336 agccgccgcgccgcgccgcacc 21373357 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ccctccccgatccgatcgccg 102 ||||||||||||||||||||| Sbjct: 19382465 ccctccccgatccgatcgccg 19382445
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 19188515 agccgccgcgccgcgccgcacc 19188536 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 13032424 agccgccgcgccgcgccgcacc 13032403
>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136155 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 95618 agccgccgcgccgcgccgcacc 95639
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 agccgccgcgccgcgccgcacc 50 |||||||||||||||||||||| Sbjct: 67353 agccgccgcgccgcgccgcacc 67332
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Minus Query: 30 gccgccgcgccgcgccgcaccaccg 54 ||||||||||||||||||| ||||| Sbjct: 992861 gccgccgcgccgcgccgcatcaccg 992837
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Minus Query: 37 cgccgcgccgcaccaccgtctcctc 61 |||||||| |||||||||||||||| Sbjct: 1290814 cgccgcgcagcaccaccgtctcctc 1290790 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gatcccgccgccatccgccg 183 |||||||||||||||||||| Sbjct: 699838 gatcccgccgccatccgccg 699857
>gb|AC105767.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B11, complete sequence Length = 103615 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 ccgccgtcgtcatccccgtcg 198 ||||||||||||||||||||| Sbjct: 77894 ccgccgtcgtcatccccgtcg 77874
>gb|AC109239.8| Mus musculus chromosome 3, clone RP23-191N23, complete sequence Length = 187162 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 cgagccgccgcgccgcgccgc 47 ||||||||||||||||||||| Sbjct: 150575 cgagccgccgcgccgcgccgc 150555
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 cgagccgccgcgccgcgccgc 47 ||||||||||||||||||||| Sbjct: 561062 cgagccgccgcgccgcgccgc 561042
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Minus Query: 161 accgatcccgccgccatccgccgtc 185 ||||||| ||||||||||||||||| Sbjct: 1883097 accgatctcgccgccatccgccgtc 1883073
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 cccgccgccatccgccgtcgt 187 ||||||||||||||||||||| Sbjct: 15071115 cccgccgccatccgccgtcgt 15071135
>gb|AC159255.3| Mus musculus BAC clone RP24-89C11 from chromosome 3, complete sequence Length = 216011 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 cgagccgccgcgccgcgccgc 47 ||||||||||||||||||||| Sbjct: 200414 cgagccgccgcgccgcgccgc 200434
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 gcgagccgccgcgccgcgccg 46 ||||||||||||||||||||| Sbjct: 4878214 gcgagccgccgcgccgcgccg 4878194
>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete sequence Length = 152172 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 ccctccccgatccgatcgccg 102 ||||||||||||||||||||| Sbjct: 5192 ccctccccgatccgatcgccg 5212
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 ccgatcccgccgccatccgcc 182 ||||||||||||||||||||| Sbjct: 4369370 ccgatcccgccgccatccgcc 4369390 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 ccgatcccgccgccatccgccgtc 185 |||||| ||||||||||||||||| Sbjct: 328505 ccgatctcgccgccatccgccgtc 328482
>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048F08, from chromosome 3, complete sequence Length = 155790 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cccgccgccatccgccgtcgt 187 ||||||||||||||||||||| Sbjct: 83658 cccgccgccatccgccgtcgt 83638
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 ccgccgccatccgccgtcgtc 188 ||||||||||||||||||||| Sbjct: 19487080 ccgccgccatccgccgtcgtc 19487060 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gagccgccgcgccgcgccgc 47 |||||||||||||||||||| Sbjct: 30546978 gagccgccgcgccgcgccgc 30546959
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 cccgccgccatccgccgtcgt 187 ||||||||||||||||||||| Sbjct: 15065649 cccgccgccatccgccgtcgt 15065669
>gb|AE009536.1| Brucella melitensis 16M chromosome I, section 93 of 195 of the complete sequence Length = 12429 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Plus Query: 30 gccgccgcgccgcgccgcaccaccg 54 ||||||||||||||||||| ||||| Sbjct: 5383 gccgccgcgccgcgccgcatcaccg 5407
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Minus Query: 30 gccgccgcgccgcgccgcaccaccg 54 ||||||||||||||||||| ||||| Sbjct: 1011850 gccgccgcgccgcgccgcatcaccg 1011826
>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0410C01 Length = 138424 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 ccgccgccatccgccgtcgtc 188 ||||||||||||||||||||| Sbjct: 105489 ccgccgccatccgccgtcgtc 105469
>dbj|AK109293.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-D02, full insert sequence Length = 1128 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 ccgccgtcgtcatccccgtcg 198 ||||||||||||||||||||| Sbjct: 188 ccgccgtcgtcatccccgtcg 208
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Minus Query: 30 gccgccgcgccgcgccgcaccaccg 54 ||||||||||||||||||| ||||| Sbjct: 1008970 gccgccgcgccgcgccgcatcaccg 1008946
>gb|AC110509.21| Mus musculus chromosome 8, clone RP24-423G4, complete sequence Length = 190160 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ctgctctgctccccctcccc 89 |||||||||||||||||||| Sbjct: 132059 ctgctctgctccccctcccc 132078
>ref|NM_185999.2| Oryza sativa (japonica cultivar-group), mRNA Length = 939 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 tcgtcatccccgtcgaccgcctcc 207 ||||| |||||||||||||||||| Sbjct: 271 tcgtcctccccgtcgaccgcctcc 294
>ref|XM_473084.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1968 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gagccgccgcgccgcgccgc 47 |||||||||||||||||||| Sbjct: 1380 gagccgccgcgccgcgccgc 1361
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 cgagccgccgcgccgcgccg 46 |||||||||||||||||||| Sbjct: 575948 cgagccgccgcgccgcgccg 575929
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gcagcgagccgccgcgccgc 42 |||||||||||||||||||| Sbjct: 3121575 gcagcgagccgccgcgccgc 3121556
>gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0040E06, complete sequence Length = 160907 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 ccgtctcctcctcgcccgctgctc 75 ||||||||||||||||| |||||| Sbjct: 41850 ccgtctcctcctcgccctctgctc 41873
>gb|AC007578.6| Drosophila melanogaster clone BACR09A11, complete sequence Length = 170684 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 atcccgccgccatccgccgt 184 |||||||||||||||||||| Sbjct: 34915 atcccgccgccatccgccgt 34934
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gcagcgagccgccgcgccgc 42 |||||||||||||||||||| Sbjct: 1318413 gcagcgagccgccgcgccgc 1318394
>ref|XM_532529.2| PREDICTED: Canis familiaris similar to U6 snRNA-associated Sm-like protein LSm8, transcript variant 1 (LOC475298), mRNA Length = 510 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gccgccgcgccgcgccgcac 49 |||||||||||||||||||| Sbjct: 51 gccgccgcgccgcgccgcac 32
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 cgatccgatcgccgccggcg 108 |||||||||||||||||||| Sbjct: 1525780 cgatccgatcgccgccggcg 1525799
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cgagccgccgcgccgcgccg 46 |||||||||||||||||||| Sbjct: 309919 cgagccgccgcgccgcgccg 309938
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gcagcgagccgccgcgccgc 42 |||||||||||||||||||| Sbjct: 1222636 gcagcgagccgccgcgccgc 1222617
>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07, complete sequence Length = 130779 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gagccgccgcgccgcgccgc 47 |||||||||||||||||||| Sbjct: 42674 gagccgccgcgccgcgccgc 42655
>ref|NM_165841.1| Drosophila melanogaster engrailed CG9015-RB, transcript variant B (en), mRNA Length = 2794 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 atcccgccgccatccgccgt 184 |||||||||||||||||||| Sbjct: 1699 atcccgccgccatccgccgt 1718
>ref|NM_078976.3| Drosophila melanogaster engrailed CG9015-RA, transcript variant A (en), mRNA Length = 2467 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 atcccgccgccatccgccgt 184 |||||||||||||||||||| Sbjct: 1372 atcccgccgccatccgccgt 1391
>gb|AY069448.1| Drosophila melanogaster LD16125 full length cDNA Length = 2458 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 atcccgccgccatccgccgt 184 |||||||||||||||||||| Sbjct: 1352 atcccgccgccatccgccgt 1371
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 ccgccatccgccgtcgtcatcccc 194 |||||||||||||||||| ||||| Sbjct: 380735 ccgccatccgccgtcgtcttcccc 380758
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 tcgtcatccccgtcgaccgcctcc 207 ||||| |||||||||||||||||| Sbjct: 27727745 tcgtcctccccgtcgaccgcctcc 27727768
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gagccgccgcgccgcgccgc 47 |||||||||||||||||||| Sbjct: 19801442 gagccgccgcgccgcgccgc 19801423
>gb|DQ305493.1| Pseudomonas fluorescens lipase (lip) gene, complete cds Length = 1698 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 tttggaaccctcggtgccga 136 |||||||||||||||||||| Sbjct: 199 tttggaaccctcggtgccga 180
>dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0047D12 Length = 145981 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gagccgccgcgccgcgccgc 47 |||||||||||||||||||| Sbjct: 24400 gagccgccgcgccgcgccgc 24381
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ccgcaccaccgtctcctcct 63 |||||||||||||||||||| Sbjct: 6909144 ccgcaccaccgtctcctcct 6909125
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cgagccgccgcgccgcgccg 46 |||||||||||||||||||| Sbjct: 2084905 cgagccgccgcgccgcgccg 2084924 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gcgagccgccgcgccgcgcc 45 |||||||||||||||||||| Sbjct: 1329789 gcgagccgccgcgccgcgcc 1329770
>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster, complete sequence Length = 123580 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 36 gcgccgcgccgcaccaccgtctcctcct 63 |||||||||||| || |||||||||||| Sbjct: 7205 gcgccgcgccgcgccgccgtctcctcct 7232
>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496C02 Length = 148419 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 tcgtcatccccgtcgaccgcctcc 207 ||||| |||||||||||||||||| Sbjct: 20124 tcgtcctccccgtcgaccgcctcc 20147
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 tcgtcatccccgtcgaccgcctcc 207 ||||| |||||||||||||||||| Sbjct: 106847 tcgtcctccccgtcgaccgcctcc 106870
>dbj|AP006061.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0414D03 Length = 169823 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 ccgccatccgccgtcgtcatcccc 194 |||||||||||||||||| ||||| Sbjct: 129334 ccgccatccgccgtcgtcttcccc 129357
>dbj|AP005909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0006G10 Length = 156293 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 ccgccatccgccgtcgtcatcccc 194 |||||||||||||||||| ||||| Sbjct: 5095 ccgccatccgccgtcgtcttcccc 5118
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 cgatccgatcgccgccggcg 108 |||||||||||||||||||| Sbjct: 6679205 cgatccgatcgccgccggcg 6679186
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0069C14 Length = 150579 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gagccgccgcgccgcgccgc 47 |||||||||||||||||||| Sbjct: 45541 gagccgccgcgccgcgccgc 45522
>dbj|AK109241.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-G02, full insert sequence Length = 747 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 ccgtctcctcctcgcccgctgctc 75 ||||||||||||||||| |||||| Sbjct: 80 ccgtctcctcctcgccctctgctc 103
>dbj|AK069789.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034O04, full insert sequence Length = 938 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 tcgtcatccccgtcgaccgcctcc 207 ||||| |||||||||||||||||| Sbjct: 270 tcgtcctccccgtcgaccgcctcc 293
>gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25 of 73 of the complete sequence Length = 261690 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 atcccgccgccatccgccgt 184 |||||||||||||||||||| Sbjct: 61207 atcccgccgccatccgccgt 61188
>gb|BC098811.1| Rattus norvegicus tetratricopeptide repeat domain 7, mRNA (cDNA clone IMAGE:7377069), partial cds Length = 2464 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 aggtgtgggggatggcttcc 277 |||||||||||||||||||| Sbjct: 1934 aggtgtgggggatggcttcc 1915
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 agcgagccgccgcgccgcgccgca 48 |||| ||||||||||||||||||| Sbjct: 2618962 agcgcgccgccgcgccgcgccgca 2618985 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 agcgagccgccgcgccgcgc 44 |||||||||||||||||||| Sbjct: 2269600 agcgagccgccgcgccgcgc 2269581
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14, complete sequence Length = 150187 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gagccgccgcgccgcgccgc 47 |||||||||||||||||||| Sbjct: 108434 gagccgccgcgccgcgccgc 108415
>gb|AC127360.3| Mus musculus BAC clone RP23-125F9 from 15, complete sequence Length = 192315 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ccgccgcgccgcgccgcacc 50 |||||||||||||||||||| Sbjct: 147722 ccgccgcgccgcgccgcacc 147741
>gb|M10017.1|DROENGM Drosophila melanogaster engrailed protein (en) mRNA, complete cds Length = 2412 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 atcccgccgccatccgccgt 184 |||||||||||||||||||| Sbjct: 1327 atcccgccgccatccgccgt 1346 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,360,183 Number of Sequences: 3902068 Number of extensions: 2360183 Number of successful extensions: 61677 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57435 Number of HSP's gapped (non-prelim): 4240 length of query: 299 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 277 effective length of database: 17,147,199,772 effective search space: 4749774336844 effective search space used: 4749774336844 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
