ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast65f05 |
|---|---|
| Clone Library Name | barley_pub |
>5HT2A_DROME (P28285) 5-hydroxytryptamine receptor 2A (5-HT receptor) (Serotonin| receptor 2A) Length = 834 Score = 35.8 bits (81), Expect = 0.062 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 9/47 (19%) Frame = +1 Query: 64 SPRSPCPPPVRLAVAAANPPTALT---------HPLCGTPSTPKNTP 177 SP++P V +A AAA P TA T HPLCGT + +TP Sbjct: 650 SPQTPTSQGVGIAAAAAGPMTAKTSTLTSCNQSHPLCGTANESPSTP 696
>UCP8_SCHPO (O94685) UBA domain-containing protein 8| Length = 884 Score = 33.9 bits (76), Expect = 0.24 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%) Frame = +1 Query: 76 PCPPPVRLAVAAANPPTALTHPLCGTP----STPKNTPNA 183 P PPPVR +++ + PP LTH TP S P++ P + Sbjct: 744 PPPPPVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783
>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)| Length = 701 Score = 33.5 bits (75), Expect = 0.31 Identities = 15/54 (27%), Positives = 25/54 (46%) Frame = +1 Query: 64 SPRSPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALWSGRETAAASPP 225 +P P PP +++ + ++PP P G+P TP+ P + S PP Sbjct: 569 APARPTMPPPQVSGSRSSPPAPPLPPGSGSPGTPQALPRRLVGSSLRAPTVPPP 622
>PHKG2_RAT (P31325) Phosphorylase b kinase gamma catalytic chain, testis/liver| isoform (EC 2.7.11.19) (PHK-gamma-T) (Phosphorylase kinase gamma subunit 2) Length = 406 Score = 32.7 bits (73), Expect = 0.53 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Frame = +3 Query: 216 FAAEDWDDRPRTIEEIQA-MLQTRKDAALKRERALSYAF 329 F++ +WDDR T++++ A +LQ +A L E+AL + F Sbjct: 252 FSSPEWDDRSNTVKDLIAKLLQVDPNARLTAEQALQHPF 290
>PHKG2_HUMAN (P15735) Phosphorylase b kinase gamma catalytic chain, testis/liver| isoform (EC 2.7.11.19) (PHK-gamma-T) (Phosphorylase kinase gamma subunit 2) (PSK-C3) Length = 406 Score = 32.7 bits (73), Expect = 0.53 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = +3 Query: 216 FAAEDWDDRPRTIEE-IQAMLQTRKDAALKRERALSYAF 329 F++ +WDDR T+++ I +LQ +A L E+AL + F Sbjct: 252 FSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQHPF 290
>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing| protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1 ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral sclerosis 2 chromosomal region candidate 9 gene protein) Length = 1302 Score = 32.0 bits (71), Expect = 0.90 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +1 Query: 64 SPRSPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALWSGRETAAASPP 225 SP P PPP V PP+ + P P T TP+ + G++T+ S P Sbjct: 965 SPDFPPPPPESSLVFPPPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSP 1018
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 31.2 bits (69), Expect = 1.5 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = +1 Query: 67 PRSPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTP 177 P P PPP LA + A+PP T PL P+ P P Sbjct: 4636 PEEPSPPPSPLAPSPASPP---TEPLVELPTEPLAEP 4669
>V70K_TYMVA (P20131) 69 kDa protein| Length = 628 Score = 31.2 bits (69), Expect = 1.5 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = +1 Query: 67 PRSPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALWSGRETAAASPP 225 P+ PPP R + A PP + L TPS P TP E+ A+PP Sbjct: 431 PKEGPPPPPRRLPSPATPPQSPLRDLGRTPSFP--TPPKTSTRAPESCIAAPP 481
>CF047_HUMAN (O95873) Protein C6orf47 (Protein G4)| Length = 294 Score = 30.4 bits (67), Expect = 2.6 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = +3 Query: 171 YAERRSVERSRDGSSFAAEDWDDRPRTIEEIQAMLQTRKDAALKRERALS 320 Y E R V+ S + S DWD P T+E++ +T+ AL+ RA S Sbjct: 26 YPEPRRVDSSSENSG---SDWDSAPETMEDV-GHPKTKDSGALRVSRAAS 71
>RANB9_HUMAN (Q96S59) Ran-binding protein 9 (RanBP9) (RanBP7) (Ran-binding| protein M) (RanBPM) (BPM90) (BPM-L) Length = 729 Score = 30.0 bits (66), Expect = 3.4 Identities = 19/58 (32%), Positives = 22/58 (37%) Frame = +1 Query: 49 TSGCDSPRSPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALWSGRETAAASP 222 T+ P P PPP A A+ PP L P P AL +G AA P Sbjct: 79 TAAPPPPPPPPPPPASAAAPASGPPA--PPGLAAGPGPAGGAPTPALVAGSSAAAPFP 134
>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 361 Score = 30.0 bits (66), Expect = 3.4 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +1 Query: 64 SPRSPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALWSGRETAAASP 222 +P +P P P A AA+P + P P+ P TP +A + A + P Sbjct: 32 TPSTPAPTPA--ATPAASPAPVSSDPAVAAPAAPGQTPASAPAPAQTPAPSQP 82
>U2AFL_MOUSE (Q64707) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit-related protein 1 (U2(RNU2) small nuclear RNA auxillary factor 1-like 1) (SP2) Length = 428 Score = 30.0 bits (66), Expect = 3.4 Identities = 18/68 (26%), Positives = 34/68 (50%) Frame = +3 Query: 156 KYTQEYAERRSVERSRDGSSFAAEDWDDRPRTIEEIQAMLQTRKDAALKRERALSYAFSH 335 K +E A ++ E+ R AE + + + EE + LQ +++ ++ L A + Sbjct: 86 KKKEEAARKQKEEQERQ---IKAEWEEQQKKQREEEEQKLQEKREREEAVQKMLDQAENE 142 Query: 336 QIWRNPAP 359 +IW+NP P Sbjct: 143 RIWQNPEP 150
>BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2.7.11.1) (SAD1| kinase) (SAD1A) Length = 794 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 118 PPTALTHPLCGTPSTPKNTPNAALWSGRETAAASP 222 PP+A + PL G P +P+++ L S T ASP Sbjct: 510 PPSARSTPLPGPPGSPRSSGGTPLHSPLHTPRASP 544
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +1 Query: 61 DSPRSPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALWSGRETAAASPP 225 ++ +SP PP L +A PT+ PL T P + PN + T+A +PP Sbjct: 300 ENHKSPSQPP--LPSSAPPIPTSHAPPLPPTAPPPPSLPNVTSAPKKATSAPAPP 352
>IRX3_MOUSE (P81067) Iroquois-class homeodomain protein IRX-3 (Iroquois| homeobox protein 3) (Homeodomain protein IRXB1) Length = 507 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 6/57 (10%) Frame = +1 Query: 73 SPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALWSGRETAAA------SPP 225 +P PPPV A A+ P + P P+ +WS ETA + SPP Sbjct: 314 APPPPPVARAPASPPSPPSSLDPCAPAPAPSSALQKPKIWSLAETATSPDNPRRSPP 370
>MYO5_YEAST (Q04439) Myosin-5| Length = 1219 Score = 29.6 bits (65), Expect = 4.4 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 16/68 (23%) Frame = +1 Query: 70 RSPCPPPVRLAVAAA------NPPTALTH---------PLCGTPSTPKNTP-NAALWSGR 201 + P PPP + AA NP + LT P T +TP TP AA+ SGR Sbjct: 1009 KKPAPPPPGMQNKAATRRSVPNPASTLTASQSNARPSPPTAATRATPAATPAAAAMGSGR 1068 Query: 202 ETAAASPP 225 + PP Sbjct: 1069 QANIPPPP 1076
>IRX3_HUMAN (P78415) Iroquois-class homeodomain protein IRX-3 (Iroquois| homeobox protein 3) (Homeodomain protein IRXB1) Length = 501 Score = 29.6 bits (65), Expect = 4.4 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 6/57 (10%) Frame = +1 Query: 73 SPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALWSGRETAAA------SPP 225 +P PPPV +A + P P P+ +WS ETA + SPP Sbjct: 311 APAPPPVAVASPSLPSPPVSLDPCAPAPAPASALQKPKIWSLAETATSPDNPRRSPP 367
>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 29.6 bits (65), Expect = 4.4 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Frame = +1 Query: 73 SPCPPPVRLAVAAANPPTALTHPLCGTPSTPKN----TPNAALWSGRETAAASPP 225 +P PPP R A AA PP + P G P P N P AL S + PP Sbjct: 309 APPPPPSR-APTAAPPPPPPSRPGVGAPPPPPNRMYPPPLPALPSSAPSGPPPPP 362
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 29.3 bits (64), Expect = 5.8 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +1 Query: 67 PRSPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTP 177 P SP PP L + + PP A +HP G P +P Sbjct: 990 PSSPAQPP-GLTQSQSLPPPAASHPTTGLHQVPSQSP 1025
>ABL_MLVAB (P00521) Tyrosine-protein kinase transforming protein Abl (EC| 2.7.10.2) (V-abl) Length = 746 Score = 29.3 bits (64), Expect = 5.8 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +1 Query: 70 RSPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAA 186 R P PP V + A PP GTP++P +TP+ A Sbjct: 571 RKPVPPSVPKPQSTAKPP--------GTPTSPVSTPSTA 601
>ABL1_MOUSE (P00520) Proto-oncogene tyrosine-protein kinase ABL1 (EC 2.7.10.2)| (p150) (c-ABL) (Abelson murine leukemia viral oncogene homolog 1) Length = 1123 Score = 29.3 bits (64), Expect = 5.8 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +1 Query: 70 RSPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAA 186 R P PP V + A PP GTP++P +TP+ A Sbjct: 948 RKPVPPSVPKPQSTAKPP--------GTPTSPVSTPSTA 978
>TBX1_HUMAN (O43435) T-box transcription factor TBX1 (T-box protein 1)| (Testis-specific T-box protein) Length = 398 Score = 28.9 bits (63), Expect = 7.6 Identities = 20/52 (38%), Positives = 21/52 (40%) Frame = +1 Query: 67 PRSPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALWSGRETAAASP 222 PR P PPP R AA P A G P P P A +AAA P Sbjct: 40 PREPPPPPPRYDPCAAAAPGA-----PGPPPPPHAYPFAPAAGAATSAAAEP 86
>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent| helicase brm) (Protein brahma) Length = 1638 Score = 28.9 bits (63), Expect = 7.6 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = +1 Query: 85 PPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALWSGRETAAASPP 225 PPV PP+A T P C TP P + P G++ A PP Sbjct: 238 PPVPPQQQQQPPPSAGTPPQCSTP--PASNPYGPPVPGQKMQVAPPP 282
>K1219_MOUSE (Q8BQZ4) Protein KIAA1219| Length = 1484 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = -2 Query: 314 SSLTLECSVFPRLKHRLNLLYRPRPVVPVFGGEAAAVSRPLHRAAFGVFLGVLGVPQSGC 135 S + E S +P LKH + +R + +SRP +A + L +PQS Sbjct: 316 SGMPQELSQYPCLKHLPQIFFRAMRGISCLVDAFLGISRPRSDSAPPTPVNRLSMPQSAA 375 Query: 134 VN 129 VN Sbjct: 376 VN 377
>WASF2_MOUSE (Q8BH43) Wiskott-Aldrich syndrome protein family member 2| (WASP-family protein member 2) (WAVE-2 protein) Length = 497 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Frame = +1 Query: 73 SPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAA----LWSGRETAAASPP 225 +P PPP A PP L+ P G P P P +SG + A+PP Sbjct: 361 APPPPPPPPAADYPMPPPPLSQPSGGAPPPPPPPPPPGPPPLPFSGADGQPAAPP 415
>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 Length = 863 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Frame = +1 Query: 64 SPRSPCPPPVRLAVAAANPPTALTHPLC------GTPSTPKNTPNAALWSGRETAAASP 222 +P P PP AA+PP A + P G P +P AL + R + A+ P Sbjct: 733 APPGPLPPAASPGPPAASPPAAPSSPRAPRTSPYGVPGSPATRVGPALPARRLSRASRP 791
>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) (Hyperpolarization-activated cation channel 1) (HAC-1) Length = 863 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Frame = +1 Query: 64 SPRSPCPPPVRLAVAAANPPTALTHPLC------GTPSTPKNTPNAALWSGRETAAASP 222 +P P PP AA+PP A + P G P +P AL + R + A+ P Sbjct: 733 APPGPLPPAASPGPPAASPPAAPSSPRAPRTSPYGVPGSPATRVGPALPARRLSRASRP 791
>VGLG_HHV2H (P13290) Glycoprotein G| Length = 699 Score = 28.5 bits (62), Expect = 9.9 Identities = 26/104 (25%), Positives = 33/104 (31%), Gaps = 6/104 (5%) Frame = +1 Query: 61 DSPRS-----PCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALW-SGRETAAASP 222 DSP S P P + +P T P TP T A + + ETA ASP Sbjct: 353 DSPTSAPEKTPLPVSATAMAPSVDPSAEPTAPATTTPPDEMATQAATVAVTPEETAVASP 412 Query: 223 PXXXXXXXXXXXXXXXXXXXXXXLHSSVRELSHTPSLTKFGGTP 354 P ++S + TP T TP Sbjct: 413 PATASVESSPLPAAAAATPGAGHTNTSSASAAKTPPTTPAPTTP 456
>HMEN_DROME (P02836) Segmentation polarity homeobox protein engrailed| Length = 552 Score = 28.5 bits (62), Expect = 9.9 Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 6/89 (6%) Frame = +1 Query: 82 PPPVRLAVAAANPPTALTHPLC------GTPSTPKNTPNAALWSGRETAAASPPXXXXXX 243 PPP+ ++ ANP + LC G P+ P T S A+ P Sbjct: 279 PPPMSSKMSDANPEKSALGSLCKAVSQIGQPAAPTMTQPPLSSSASSLASPPPASNASTI 338 Query: 244 XXXXXXXXXXXXXXXXLHSSVRELSHTPS 330 S+ L+ +PS Sbjct: 339 SSTSSVATSSSSSSSGCSSAASSLNSSPS 367
>SYF2_NEUCR (Q7RZK5) Pre-mRNA-splicing factor syf-2| Length = 339 Score = 28.5 bits (62), Expect = 9.9 Identities = 17/46 (36%), Positives = 19/46 (41%) Frame = +1 Query: 73 SPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALWSGRETA 210 S PPV A A P TA T TP T + +A RE A Sbjct: 54 SSSSPPVLSASETAQPDTAATSQSSSTPPTSTSAAESAAAKARERA 99
>ICP0_PRVIF (P29129) Trans-acting transcriptional protein ICP0 (Early protein| 0) (EP0) Length = 410 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 67 PRSPCPPPVRLAVAAANPPTALTHPLC 147 PRSP PPP RL++ P T + P+C Sbjct: 27 PRSPSPPPQRLSL----PLTVMDCPIC 49
>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Frame = +1 Query: 73 SPCPPPVRLAVAAANPPTALTHPLCGTPSTPKN----TPNAALWSGRETAAASPP 225 +P PPP R A AA PP + P P P N P AL S + PP Sbjct: 309 APPPPPSR-APTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPP 362
>TISB_RAT (P17431) Butyrate response factor 1 (TIS11B protein) (EGF-inducible| protein CMG1) Length = 338 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = +1 Query: 61 DSPRSPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALWSGRETAAASPP 225 DSP S PPP+ A L G+P+ P T N +S +E A+ P Sbjct: 221 DSPTSITPPPILSA-----------DDLLGSPTLPDGTNNPFAFSSQELASLFAP 264
>TISB_MOUSE (P23950) Butyrate response factor 1 (TIS11B protein)| Length = 338 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = +1 Query: 61 DSPRSPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALWSGRETAAASPP 225 DSP S PPP+ A L G+P+ P T N +S +E A+ P Sbjct: 221 DSPTSITPPPILSA-----------DDLLGSPTLPDGTNNPFAFSSQELASLFAP 264
>TISB_HUMAN (Q07352) Butyrate response factor 1 (TIS11B protein) (EGF-response| factor 1) (ERF-1) Length = 338 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = +1 Query: 61 DSPRSPCPPPVRLAVAAANPPTALTHPLCGTPSTPKNTPNAALWSGRETAAASPP 225 DSP S PPP+ A L G+P+ P T N +S +E A+ P Sbjct: 221 DSPTSITPPPILSA-----------DDLLGSPTLPDGTNNPFAFSSQELASLFAP 264 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.128 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,103,922 Number of Sequences: 219361 Number of extensions: 957065 Number of successful extensions: 3978 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3596 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3943 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
