ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast65e09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.092
2dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.092
3dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.092
4ref|NM_001006424.1| Gallus gallus solute carrier family 9 (sodiu... 42 1.4
5gb|AC105320.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
6gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
7gb|AC005751.1| Homo sapiens chromosome 16, BAC clone 375G12 (LAN... 42 1.4
8gb|AC009135.12| Homo sapiens chromosome 16 clone RP11-509E10, co... 42 1.4
9emb|AJ719570.1| Gallus gallus mRNA for hypothetical protein, clo... 42 1.4
10emb|CR858235.1| Pongo pygmaeus mRNA; cDNA DKFZp469K0718 (from cl... 42 1.4
11emb|CR353503.1| Gallus gallus finished cDNA, clone ChEST127h22 42 1.4
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
14dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
15gb|AY841870.1| Homo sapiens ornithine decarboxylase 1 (ODC1) gen... 40 5.7
16ref|XM_474363.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
17ref|XM_464101.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.7
18gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, co... 40 5.7
19gb|M81740.1|HUMODC1A Human ornithine decarboxylase (ODC1) gene, ... 40 5.7
20gb|BC055748.1| Mus musculus achaete-scute complex homolog-like 1... 40 5.7
21gb|BC025296.1| Homo sapiens ornithine decarboxylase 1, mRNA (cDN... 40 5.7
22gb|BC014562.2| Homo sapiens ornithine decarboxylase 1, mRNA (cDN... 40 5.7
23ref|NM_008553.2| Mus musculus achaete-scute complex homolog-like... 40 5.7
24ref|NM_002539.1| Homo sapiens ornithine decarboxylase 1 (ODC1), ... 40 5.7
25gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 5.7
26ref|XM_860064.1| PREDICTED: Canis familiaris hypothetical protei... 40 5.7
27ref|XM_817121.1| Leishmania major strain Friedlin hypothetical p... 40 5.7
28ref|XM_540566.2| PREDICTED: Canis familiaris similar to Oxystero... 40 5.7
29gb|AC122913.4| Mus musculus BAC clone RP23-25J21 from 3, complet... 40 5.7
30emb|AL450386.17| Human DNA sequence from clone RP11-466B20 on ch... 40 5.7
31emb|AL161729.27| Human DNA sequence from clone RP11-435O5 on chr... 40 5.7
32gb|CP000088.1| Thermobifida fusca YX, complete genome 40 5.7
33emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4,... 40 5.7
34emb|CR614398.1| full-length cDNA clone CS0DI076YD10 of Placenta ... 40 5.7
35ref|NM_000264.2| Homo sapiens patched homolog (Drosophila) (PTCH... 40 5.7
36gb|DP000059.1| Carollia perspicillata target 117 genomic scaffold 40 5.7
37dbj|AK143210.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 5.7
38dbj|AK141866.1| Mus musculus 12 days embryo spinal ganglion cDNA... 40 5.7
39gb|AC122360.4| Mus musculus BAC clone RP23-428P21 from chromosom... 40 5.7
40gb|S71124.1| ornithine decarboxylase {12-O-tetradecanoylphorbol-... 40 5.7
41gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.7
42gb|U68534.2|U68534 Mus musculus achaete-scute complex homolog-li... 40 5.7
43dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
44gb|AC016776.6| Homo sapiens BAC clone RP11-574K22 from 2, comple... 40 5.7
45gb|AC007249.5| Homo sapiens BAC clone RP11-320M2 from 2, complet... 40 5.7
46dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
47emb|AJ457972.1|SOL457972 Streptomyces olivaceoviridis xycE gene,... 40 5.7
48dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
49dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
50emb|AJ335292.1|HSA335292 Homo sapiens genomic sequence surroundi... 40 5.7
51emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 5.7
52gb|U59464.1|HSU59464 Human PATCHED protein (PTC) mRNA, complete cds 40 5.7
53gb|M33764.1|HUMSODB Human ornithine decarboxylase gene, complete... 40 5.7
54gb|M31061.1|HUMSODA Human ornithine decarboxylase gene, complete... 40 5.7
55gb|M34157.1|HUMODCA1 Human ornithine decarboxylase (ODC) gene, e... 40 5.7
56emb|X55362.1|HSODC1 Human odc1 mRNA for ornithine decarboxylase 40 5.7
57emb|X16277.1|HSODCG Human gene for ornithine decarboxylase ODC (... 40 5.7
58gb|M95603.1|MUSHASH1X Mouse helix-loop-helix protein, homologous... 40 5.7
59gb|M30949.1|ORARGIT Orangutan rRNA gene internal transcribed spa... 40 5.7 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 89       cggcgatggcggcgagggcgctt 111
                |||||||||||||||||||||||
Sbjct: 19762646 cggcgatggcggcgagggcgctt 19762624



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 89       cggcgatggcggcgagggcg 108
                ||||||||||||||||||||
Sbjct: 27857118 cggcgatggcggcgagggcg 27857137



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 36      gccgccgccgccgcggtcac 55
               ||||||||||||||||||||
Sbjct: 2214580 gccgccgccgccgcggtcac 2214599
to top
>dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1112_G07
          Length = 149119

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 89    cggcgatggcggcgagggcgctt 111
             |||||||||||||||||||||||
Sbjct: 71197 cggcgatggcggcgagggcgctt 71175
to top
>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1136H02
          Length = 145086

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 89     cggcgatggcggcgagggcgctt 111
              |||||||||||||||||||||||
Sbjct: 119404 cggcgatggcggcgagggcgctt 119382
to top
>ref|NM_001006424.1| Gallus gallus solute carrier family 9 (sodium/hydrogen exchanger),
           member 3 regulator 1 (SLC9A3R1), mRNA
          Length = 1811

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 112 gggctcgccggccgagcgctc 132
           |||||||||||||||||||||
Sbjct: 167 gggctcgccggccgagcgctc 187
to top
>gb|AC105320.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1675_H07,
              complete sequence
          Length = 135294

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 88     acggcgatggcggcgagggcgcttg 112
              |||||||||| ||||||||||||||
Sbjct: 111841 acggcgatggtggcgagggcgcttg 111817
to top
>gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_D04,
             complete sequence
          Length = 168424

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 88    acggcgatggcggcgagggcgcttg 112
             |||||||||| ||||||||||||||
Sbjct: 62905 acggcgatggtggcgagggcgcttg 62881
to top
>gb|AC005751.1| Homo sapiens chromosome 16, BAC clone 375G12 (LANL), complete sequence
          Length = 162822

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 36     gccgccgccgccgcggtcacg 56
              |||||||||||||||||||||
Sbjct: 156991 gccgccgccgccgcggtcacg 156971
to top
>gb|AC009135.12| Homo sapiens chromosome 16 clone RP11-509E10, complete sequence
          Length = 221640

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 36    gccgccgccgccgcggtcacg 56
             |||||||||||||||||||||
Sbjct: 95822 gccgccgccgccgcggtcacg 95842
to top
>emb|AJ719570.1| Gallus gallus mRNA for hypothetical protein, clone 3g21
          Length = 1811

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 112 gggctcgccggccgagcgctc 132
           |||||||||||||||||||||
Sbjct: 167 gggctcgccggccgagcgctc 187
to top
>emb|CR858235.1| Pongo pygmaeus mRNA; cDNA DKFZp469K0718 (from clone DKFZp469K0718)
          Length = 3991

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 33  tctgccgccgccgccgcggtc 53
           |||||||||||||||||||||
Sbjct: 140 tctgccgccgccgccgcggtc 120
to top
>emb|CR353503.1| Gallus gallus finished cDNA, clone ChEST127h22
          Length = 2144

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 112 gggctcgccggccgagcgctc 132
           |||||||||||||||||||||
Sbjct: 155 gggctcgccggccgagcgctc 175
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 29       tcggtctgccgccgccgccgc 49
                |||||||||||||||||||||
Sbjct: 27225047 tcggtctgccgccgccgccgc 27225067
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 88       acggcgatggcggcgagggcgcttg 112
                |||||||||| ||||||||||||||
Sbjct: 15407884 acggcgatggtggcgagggcgcttg 15407860
to top
>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0637D03
          Length = 180159

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 29    tcggtctgccgccgccgccgc 49
             |||||||||||||||||||||
Sbjct: 82063 tcggtctgccgccgccgccgc 82083
to top
>gb|AY841870.1| Homo sapiens ornithine decarboxylase 1 (ODC1) gene, complete cds
          Length = 11908

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  cggccgagcgctcctgcggc 139
            ||||||||||||||||||||
Sbjct: 2087 cggccgagcgctcctgcggc 2106
to top
>ref|XM_474363.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1608

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 34  ctgccgccgccgccgcggtcacga 57
           |||||||||||||||||| |||||
Sbjct: 173 ctgccgccgccgccgcggacacga 150
to top
>ref|XM_464101.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3420

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 36 gccgccgccgccgcggtcac 55
          ||||||||||||||||||||
Sbjct: 53 gccgccgccgccgcggtcac 34
to top
>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence
          Length = 355714

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    tctgccgccgccgccgcggt 52
             ||||||||||||||||||||
Sbjct: 71284 tctgccgccgccgccgcggt 71303
to top
>gb|M81740.1|HUMODC1A Human ornithine decarboxylase (ODC1) gene, complete cds
          Length = 9373

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  cggccgagcgctcctgcggc 139
            ||||||||||||||||||||
Sbjct: 1596 cggccgagcgctcctgcggc 1615
to top
>gb|BC055748.1| Mus musculus achaete-scute complex homolog-like 1 (Drosophila),
           mRNA (cDNA clone MGC:67103 IMAGE:6415061), complete cds
          Length = 2028

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  ctgccgccgccgccgcggtc 53
           ||||||||||||||||||||
Sbjct: 203 ctgccgccgccgccgcggtc 184
to top
>gb|BC025296.1| Homo sapiens ornithine decarboxylase 1, mRNA (cDNA clone MGC:39254
           IMAGE:5088190), complete cds
          Length = 2039

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 cggccgagcgctcctgcggc 139
           ||||||||||||||||||||
Sbjct: 89  cggccgagcgctcctgcggc 108
to top
>gb|BC014562.2| Homo sapiens ornithine decarboxylase 1, mRNA (cDNA clone MGC:1694
           IMAGE:3505599), complete cds
          Length = 2043

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 cggccgagcgctcctgcggc 139
           ||||||||||||||||||||
Sbjct: 74  cggccgagcgctcctgcggc 93
to top
>ref|NM_008553.2| Mus musculus achaete-scute complex homolog-like 1 (Drosophila)
           (Ascl1), mRNA
          Length = 2028

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  ctgccgccgccgccgcggtc 53
           ||||||||||||||||||||
Sbjct: 203 ctgccgccgccgccgcggtc 184
to top
>ref|NM_002539.1| Homo sapiens ornithine decarboxylase 1 (ODC1), mRNA
          Length = 2062

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 cggccgagcgctcctgcggc 139
           ||||||||||||||||||||
Sbjct: 122 cggccgagcgctcctgcggc 141
to top
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 30      cggtctgccgccgccgccgc 49
               ||||||||||||||||||||
Sbjct: 2430375 cggtctgccgccgccgccgc 2430394
to top
>ref|XM_860064.1| PREDICTED: Canis familiaris hypothetical protein LOC609747
           (LOC609747), mRNA
          Length = 666

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  ctgccgccgccgccgcggtc 53
           ||||||||||||||||||||
Sbjct: 225 ctgccgccgccgccgcggtc 206
to top
>ref|XM_817121.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0100)
           partial mRNA
          Length = 5883

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 33  tctgccgccgccgccgcggt 52
           ||||||||||||||||||||
Sbjct: 500 tctgccgccgccgccgcggt 481
to top
>ref|XM_540566.2| PREDICTED: Canis familiaris similar to Oxysterol-binding protein 1
            (LOC483448), mRNA
          Length = 3533

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   gccgccgccgccgcggtcac 55
            ||||||||||||||||||||
Sbjct: 1055 gccgccgccgccgcggtcac 1036
to top
>gb|AC122913.4| Mus musculus BAC clone RP23-25J21 from 3, complete sequence
          Length = 205216

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     cggtctgccgccgccgccgc 49
              ||||||||||||||||||||
Sbjct: 159483 cggtctgccgccgccgccgc 159502
to top
>emb|AL450386.17| Human DNA sequence from clone RP11-466B20 on chromosome 10 Contains a
             novel gene and a CpG island, complete sequence
          Length = 91331

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   cacagcaggtggtggcagga 310
             ||||||||||||||||||||
Sbjct: 44757 cacagcaggtggtggcagga 44776
to top
>emb|AL161729.27| Human DNA sequence from clone RP11-435O5 on chromosome 9q22.1-22.33
             Contains the PTCH gene for patched homolog, a novel gene,
             the gene for a novel protein similar to a metallothionein
             protein (MT1) and three CpG islands, complete sequence
          Length = 189643

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    ctgccgccgccgccgcggtc 53
             ||||||||||||||||||||
Sbjct: 52543 ctgccgccgccgccgcggtc 52524
to top
>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 37      ccgccgccgccgcggtcacg 56
               ||||||||||||||||||||
Sbjct: 1169948 ccgccgccgccgcggtcacg 1169929
to top
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01,
             complete sequence
          Length = 133331

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 34    ctgccgccgccgccgcggtcacga 57
             |||||||||||||||||| |||||
Sbjct: 13709 ctgccgccgccgccgcggacacga 13686
to top
>emb|CR614398.1| full-length cDNA clone CS0DI076YD10 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 2178

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 cggccgagcgctcctgcggc 139
           ||||||||||||||||||||
Sbjct: 271 cggccgagcgctcctgcggc 290
to top
>ref|NM_000264.2| Homo sapiens patched homolog (Drosophila) (PTCH), mRNA
          Length = 6825

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  ctgccgccgccgccgcggtc 53
           ||||||||||||||||||||
Sbjct: 241 ctgccgccgccgccgcggtc 222
to top
>gb|DP000059.1| Carollia perspicillata target 117 genomic scaffold
          Length = 359132

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    tgctgtccactgacaagagc 186
              ||||||||||||||||||||
Sbjct: 139283 tgctgtccactgacaagagc 139264
to top
>dbj|AK143210.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130308P22 product:achaete-scute complex
           homolog-like 1 (Drosophila), full insert sequence
          Length = 2260

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  ctgccgccgccgccgcggtc 53
           ||||||||||||||||||||
Sbjct: 682 ctgccgccgccgccgcggtc 663
to top
>dbj|AK141866.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130038A21 product:achaete-scute
           complex homolog-like 1 (Drosophila), full insert
           sequence
          Length = 1370

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  ctgccgccgccgccgcggtc 53
           ||||||||||||||||||||
Sbjct: 671 ctgccgccgccgccgcggtc 652
to top
>gb|AC122360.4| Mus musculus BAC clone RP23-428P21 from chromosome 10, complete sequence
          Length = 210757

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     ctgccgccgccgccgcggtc 53
              ||||||||||||||||||||
Sbjct: 116630 ctgccgccgccgccgcggtc 116649
to top
>gb|S71124.1| ornithine decarboxylase
            {12-O-tetradecanoylphorbol-13-acetate-responsive
            sequences, exon 1, promoter} [human, leukocytes, Genomic,
            2568 nt]
          Length = 2568

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  cggccgagcgctcctgcggc 139
            ||||||||||||||||||||
Sbjct: 2436 cggccgagcgctcctgcggc 2455
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     cggcgatggcggcgagggcg 108
              ||||||||||||||||||||
Sbjct: 473521 cggcgatggcggcgagggcg 473540
to top
>gb|U68534.2|U68534 Mus musculus achaete-scute complex homolog-like 1 (Ascl1) gene,
             complete cds
          Length = 14008

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    ctgccgccgccgccgcggtc 53
             ||||||||||||||||||||
Sbjct: 10688 ctgccgccgccgccgcggtc 10669
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 34       ctgccgccgccgccgcggtcacga 57
                |||||||||||||||||| |||||
Sbjct: 34708147 ctgccgccgccgccgcggacacga 34708124
to top
>gb|AC016776.6| Homo sapiens BAC clone RP11-574K22 from 2, complete sequence
          Length = 197425

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    gccgccgccgccgcggtcac 55
             ||||||||||||||||||||
Sbjct: 77059 gccgccgccgccgcggtcac 77040
to top
>gb|AC007249.5| Homo sapiens BAC clone RP11-320M2 from 2, complete sequence
          Length = 200491

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    cggccgagcgctcctgcggc 139
              ||||||||||||||||||||
Sbjct: 112788 cggccgagcgctcctgcggc 112769
to top
>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0663F07
          Length = 159046

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     cggcgatggcggcgagggcg 108
              ||||||||||||||||||||
Sbjct: 142451 cggcgatggcggcgagggcg 142470
to top
>emb|AJ457972.1|SOL457972 Streptomyces olivaceoviridis xycE gene, xycK gene and xycH gene
          Length = 5292

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   gccgccgccgccgcggtcac 55
            ||||||||||||||||||||
Sbjct: 2290 gccgccgccgccgcggtcac 2309
to top
>dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1123_E07
          Length = 113187

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   gccgccgccgccgcggtcac 55
            ||||||||||||||||||||
Sbjct: 1529 gccgccgccgccgcggtcac 1548
to top
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1679_B08
          Length = 142529

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     gccgccgccgccgcggtcac 55
              ||||||||||||||||||||
Sbjct: 129273 gccgccgccgccgcggtcac 129292
to top
>emb|AJ335292.1|HSA335292 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-ID13C
          Length = 704

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  gccgccgccgccgcggtcac 55
           ||||||||||||||||||||
Sbjct: 244 gccgccgccgccgcggtcac 225
to top
>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete
             sequence
          Length = 103264

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 34    ctgccgccgccgccgcggtcacga 57
             |||||||||||||||||| |||||
Sbjct: 51197 ctgccgccgccgccgcggacacga 51174
to top
>gb|U59464.1|HSU59464 Human PATCHED protein (PTC) mRNA, complete cds
          Length = 4344

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 34 ctgccgccgccgccgcggtc 53
          ||||||||||||||||||||
Sbjct: 53 ctgccgccgccgccgcggtc 34
to top
>gb|M33764.1|HUMSODB Human ornithine decarboxylase gene, complete cds
          Length = 8841

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 cggccgagcgctcctgcggc 139
           ||||||||||||||||||||
Sbjct: 516 cggccgagcgctcctgcggc 535
to top
>gb|M31061.1|HUMSODA Human ornithine decarboxylase gene, complete cds
          Length = 8042

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 cggccgagcgctcctgcggc 139
           ||||||||||||||||||||
Sbjct: 271 cggccgagcgctcctgcggc 290
to top
>gb|M34157.1|HUMODCA1 Human ornithine decarboxylase (ODC) gene, exon 1
          Length = 1111

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 cggccgagcgctcctgcggc 139
           ||||||||||||||||||||
Sbjct: 423 cggccgagcgctcctgcggc 442
to top
>emb|X55362.1|HSODC1 Human odc1 mRNA for ornithine decarboxylase
          Length = 2035

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 cggccgagcgctcctgcggc 139
           ||||||||||||||||||||
Sbjct: 90  cggccgagcgctcctgcggc 109
to top
>emb|X16277.1|HSODCG Human gene for ornithine decarboxylase ODC (EC 4.1.1.17)
          Length = 9043

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 cggccgagcgctcctgcggc 139
           ||||||||||||||||||||
Sbjct: 916 cggccgagcgctcctgcggc 935
to top
>gb|M95603.1|MUSHASH1X Mouse helix-loop-helix protein, homologous to rat ASH1, mRNA
           complete cds
          Length = 900

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  ctgccgccgccgccgcggtc 53
           ||||||||||||||||||||
Sbjct: 184 ctgccgccgccgccgcggtc 165
to top
>gb|M30949.1|ORARGIT Orangutan rRNA gene internal transcribed spacer 1 (ITS1)
          Length = 1070

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 34  ctgccgccgccgccgcggtc 53
           ||||||||||||||||||||
Sbjct: 748 ctgccgccgccgccgcggtc 767


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,650,799
Number of Sequences: 3902068
Number of extensions: 3650799
Number of successful extensions: 221116
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 217967
Number of HSP's gapped (non-prelim): 3147
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top