ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast65e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY596544.1| Saccharum officinarum clone SCCCCL3140E04, comple... 125 1e-25
2emb|AJ867401.1| Sorghum bicolor mRNA for glycosyltransferase (a4... 125 1e-25
3emb|AJ867402.1| Saccharum officinarum mRNA for glycosyltransfera... 119 9e-24
4emb|AJ867403.1| Zea mays mRNA for glycosyltransferase (a4 gene) 92 2e-15
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 66 1e-07
6gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare str... 66 1e-07
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
8gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 geno... 62 2e-06
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
11ref|NM_197134.1| Oryza sativa (japonica cultivar-group) unknown ... 60 7e-06
12dbj|AK109476.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
13ref|XM_465334.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
14ref|XM_506798.1| PREDICTED Oryza sativa (japonica cultivar-group... 54 4e-04
15ref|XM_465333.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
16dbj|AK103231.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
17dbj|AK100151.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
18dbj|AK063938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
19dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
20dbj|AP005865.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
21dbj|AP004177.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
22gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 46 0.10
23ref|XM_550543.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.41
24emb|AM085146.1| Magnetospirillum gryphiswaldense magnetosome island 44 0.41
25dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.41
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
27dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
28dbj|AP003564.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
29gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.41
30emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete ch... 42 1.6
31emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete ... 42 1.6
32gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 40 6.4
33gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome ... 40 6.4
34ref|XM_463191.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
35gb|AF064864.1| Homo sapiens chromosome 21q22.3 PAC 21L13, comple... 40 6.4
36gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 6.4
37ref|NM_020433.4| Homo sapiens junctophilin 2 (JPH2), transcript ... 40 6.4
38gb|AF287957.6| Homo sapiens chromosome 8 clone CTD-2541M15 map p... 40 6.4
39emb|AL032644.1|CEY51H1A Caenorhabditis elegans YAC Y51H1A, compl... 40 6.4
40emb|AL163283.2|HS21C083 Homo sapiens chromosome 21 segment HS21C083 40 6.4
41emb|AL136324.6| Human DNA sequence from clone RP5-944H6 on chrom... 40 6.4
42emb|AL034419.22|HS1108D11 Human DNA sequence from clone RP5-1108... 40 6.4
43emb|BX842606.1|OSJN00297 Oryza sativa genomic DNA, chromosome 4,... 40 6.4
44emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 40 6.4
45emb|AL954235.1| Pan troglodytes chromosome 22 clone RP43-030A20 ... 40 6.4
46gb|AC093318.52| Mus musculus strain C57BL/6J clone rp23-252h7 ma... 40 6.4
47gb|AC099340.3| Homo sapiens BAC clone RP11-214O14 from 4, comple... 40 6.4
48gb|AC061975.6| Homo sapiens chromosome 17, clone CTD-2008P7, com... 40 6.4
49gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 6.4
50gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 6.4
51emb|CR388456.1| Gallus gallus finished cDNA, clone ChEST583b15 40 6.4
52ref|NM_064511.2| Caenorhabditis elegans Y51H1A.7 (Y51H1A.7) mRNA... 40 6.4
53dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
54dbj|AB076802.1| Ralstonia pickettii psdht gene for phenylserine ... 40 6.4
55dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.4
56gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosyn... 40 6.4
57dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
58gb|AE004984.1| Halobacterium sp. NRC-1 section 15 of 170 of the ... 40 6.4
59gb|AC148872.2| Chlamydomonas reinhardtii clone cr-25P21, complet... 40 6.4
60gb|AC002094.1|AC002094 Genomic sequence from Human 17, complete ... 40 6.4 
>gb|AY596544.1| Saccharum officinarum clone SCCCCL3140E04, complete sequence
          Length = 1525

 Score =  125 bits (63), Expect = 1e-25
 Identities = 93/103 (90%)
 Strand = Plus / Plus

                                                                       
Query: 223 ggagatgaagtcccggagctctgcgaggggcgagccgaggaggttcgggaatgtggctct 282
           |||||||||| |||||||||| ||||| || ||||||||| || ||||||||| ||||||
Sbjct: 143 ggagatgaagacccggagctcagcgagaggggagccgaggcggctcgggaatgcggctct 202

                                                      
Query: 283 cctggccctcatgctctgctccctcgtcgcgctctcgctcatc 325
           |||||| ||||||||||||||| ||||||||||||| ||||||
Sbjct: 203 cctggcgctcatgctctgctccgtcgtcgcgctctccctcatc 245
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>emb|AJ867401.1| Sorghum bicolor mRNA for glycosyltransferase (a4 gene)
          Length = 1476

 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                       
Query: 227 atgaagtcccggagctctgcgaggggcgagccgaggaggttcgggaatgtggctctcctg 286
           |||||| |||||||||| ||||| || ||||||||| || ||||||||| ||||||||||
Sbjct: 1   atgaagacccggagctcagcgagaggggagccgaggcggctcgggaatgcggctctcctg 60

                                                                      
Query: 287 gccctcatgctctgctccctcgtcgcgctctcgctcatcagggcaaggttctccccaat 345
           || ||||||||||||||| ||||||||||||| |||||| |||  |||||| |||||||
Sbjct: 61  gcgctcatgctctgctccgtcgtcgcgctctccctcatccgggggaggttcgccccaat 119



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 429 ccggcgatggcgccgacgaggccgccgc 456
           ||||||| ||||||||||||||||||||
Sbjct: 212 ccggcgacggcgccgacgaggccgccgc 239
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>emb|AJ867402.1| Saccharum officinarum mRNA for glycosyltransferase (a4 gene)
          Length = 1580

 Score =  119 bits (60), Expect = 9e-24
 Identities = 90/100 (90%)
 Strand = Plus / Plus

                                                                       
Query: 226 gatgaagtcccggagctctgcgaggggcgagccgaggaggttcgggaatgtggctctcct 285
           ||||||| |||||||||| ||||| || ||||||||| || ||||||||| |||||||||
Sbjct: 125 gatgaagacccggagctcagcgagaggggagccgaggcggctcgggaatgcggctctcct 184

                                                   
Query: 286 ggccctcatgctctgctccctcgtcgcgctctcgctcatc 325
           ||| ||||||||||||||| ||||||||||||| ||||||
Sbjct: 185 ggcgctcatgctctgctccgtcgtcgcgctctccctcatc 224
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>emb|AJ867403.1| Zea mays mRNA for glycosyltransferase (a4 gene)
          Length = 1514

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Plus

                                                                       
Query: 224 gagatgaagtcccggagctctgcgaggggcgagccgaggaggttcgggaatgtggctctc 283
           ||||||||| | |||||||| ||||| || ||||||||| |  |||| |||| |||||| 
Sbjct: 16  gagatgaagactcggagctcagcgagaggggagccgaggcgtctcggaaatgcggctctt 75

                                                     
Query: 284 ctggccctcatgctctgctccctcgtcgcgctctcgctcatc 325
           ||||| ||||||||||||||| ||||||||||||| ||||||
Sbjct: 76  ctggcgctcatgctctgctccgtcgtcgcgctctccctcatc 117



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 429 ccggcgatggcgccgacgaggccgccgc 456
           |||||||  |||||||||||||||||||
Sbjct: 227 ccggcgacagcgccgacgaggccgccgc 254
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                            
Query: 270      ggaatgtggctctcctggccctcatgctctgctccctcgtcgcgctctcgctcatcaggg 329
                |||||| |||| ||||||| |||||||||| ||||||| ||||||||||  ||||| | |
Sbjct: 11141433 ggaatgcggctgtcctggcactcatgctctcctccctcatcgcgctctccatcatccgcg 11141492

                             
Query: 330      caaggttctcccc 342
                | |||||||||||
Sbjct: 11141493 ccaggttctcccc 11141505
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>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0011G21, from chromosome 3, complete sequence
          Length = 142401

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                         
Query: 270   ggaatgtggctctcctggccctcatgctctgctccctcgtcgcgctctcgctcatcaggg 329
             |||||| |||| ||||||| |||||||||| ||||||| ||||||||||  ||||| | |
Sbjct: 54790 ggaatgcggctgtcctggcactcatgctctcctccctcatcgcgctctccatcatccgcg 54849

                          
Query: 330   caaggttctcccc 342
             | |||||||||||
Sbjct: 54850 ccaggttctcccc 54862
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                            
Query: 270      ggaatgtggctctcctggccctcatgctctgctccctcgtcgcgctctcgctcatcaggg 329
                |||||| |||| ||||||| |||||||||| ||||||| ||||||||||  ||||| | |
Sbjct: 11138196 ggaatgcggctgtcctggcactcatgctctcctccctcatcgcgctctccatcatccgcg 11138255

                             
Query: 330      caaggttctcccc 342
                | |||||||||||
Sbjct: 11138256 ccaggttctcccc 11138268
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>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete
             sequence
          Length = 131984

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                         
Query: 270   ggaatgtggctctcctggccctcatgctctgctccctcgtcgcgctctcgctcatcaggg 329
             |||||| |||| || |||| |||||||||| |||||||||||| ||||| ||| || | |
Sbjct: 43049 ggaatgcggctgtcatggcgctcatgctctcctccctcgtcgctctctccctcgtccgcg 43108

                                
Query: 330   caaggttctccccaatcgg 348
             | ||||||||||| |||||
Sbjct: 43109 ccaggttctcccccatcgg 43127
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                            
Query: 270      ggaatgtggctctcctggccctcatgctctgctccctcgtcgcgctctcgctcatcaggg 329
                |||||| |||| || |||| |||||||||| |||||||||||| ||||| ||| || | |
Sbjct: 18170079 ggaatgcggctgtcatggcgctcatgctctcctccctcgtcgctctctccctcgtccgcg 18170020

                                   
Query: 330      caaggttctccccaatcgg 348
                | ||||||||||| |||||
Sbjct: 18170019 ccaggttctcccccatcgg 18170001
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                            
Query: 270      ggaatgtggctctcctggccctcatgctctgctccctcgtcgcgctctcgctcatcaggg 329
                |||||| |||| || |||| |||||||||| |||||||||||| ||||| ||| || | |
Sbjct: 18179332 ggaatgcggctgtcatggcgctcatgctctcctccctcgtcgctctctccctcgtccgcg 18179273

                                   
Query: 330      caaggttctccccaatcgg 348
                | ||||||||||| |||||
Sbjct: 18179272 ccaggttctcccccatcgg 18179254
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>ref|NM_197134.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0051D19.6), mRNA
          Length = 1762

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                       
Query: 270 ggaatgtggctctcctggccctcatgctctgctccctcgtcgcgctctcgctcatcaggg 329
           |||||| |||| || |||| |||||||||| |||||||||||| ||||| ||| || | |
Sbjct: 312 ggaatgcggctgtcatggcgctcatgctctcctccctcgtcgctctctccctcgtccgcg 371

                             
Query: 330 caaggttctccccaatcg 347
           | ||||||||||| ||||
Sbjct: 372 ccaggttctcccccatcg 389
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>dbj|AK109476.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C03, full
           insert sequence
          Length = 2019

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                       
Query: 270 ggaatgtggctctcctggccctcatgctctgctccctcgtcgcgctctcgctcatcaggg 329
           |||||| |||| || |||| |||||||||| |||||||||||| ||||| ||| || | |
Sbjct: 222 ggaatgcggctgtcatggcgctcatgctctcctccctcgtcgctctctccctcgtccgcg 281

                             
Query: 330 caaggttctccccaatcg 347
           | ||||||||||| ||||
Sbjct: 282 ccaggttctcccccatcg 299
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>ref|XM_465334.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2105

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 313 gctctcgctcatcagggcaaggttctccccaatcgggaa 351
           |||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 134 gctctccctcgtcagggcaaggttctcccccatcgggaa 172
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>ref|XM_506798.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1116_E03.25-2
           mRNA
          Length = 2752

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 313 gctctcgctcatcagggcaaggttctccccaatcgggaa 351
           |||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 375 gctctccctcgtcagggcaaggttctcccccatcgggaa 413
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>ref|XM_465333.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2103

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 313 gctctcgctcatcagggcaaggttctccccaatcgggaa 351
           |||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 381 gctctccctcgtcagggcaaggttctcccccatcgggaa 419
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>dbj|AK103231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123E06, full
           insert sequence
          Length = 2101

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 313 gctctcgctcatcagggcaaggttctccccaatcgggaa 351
           |||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 379 gctctccctcgtcagggcaaggttctcccccatcgggaa 417
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>dbj|AK100151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023015H06, full
           insert sequence
          Length = 2751

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 313 gctctcgctcatcagggcaaggttctccccaatcgggaa 351
           |||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 374 gctctccctcgtcagggcaaggttctcccccatcgggaa 412
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>dbj|AK063938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D12, full
           insert sequence
          Length = 2105

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 313 gctctcgctcatcagggcaaggttctccccaatcgggaa 351
           |||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 134 gctctccctcgtcagggcaaggttctcccccatcgggaa 172
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 313      gctctcgctcatcagggcaaggttctccccaatcgg 348
                |||||| ||| ||||||||||||||||||| |||||
Sbjct: 13494883 gctctccctcgtcagggcaaggttctcccccatcgg 13494918



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 103      gccgccgcttccgccgcccg 122
                ||||||||||||||||||||
Sbjct: 33062694 gccgccgcttccgccgcccg 33062713
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>dbj|AP005865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0037J12
          Length = 118553

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 313   gctctcgctcatcagggcaaggttctccccaatcgg 348
             |||||| ||| ||||||||||||||||||| |||||
Sbjct: 10188 gctctccctcgtcagggcaaggttctcccccatcgg 10223
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>dbj|AP004177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1116_E03
          Length = 126845

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 313   gctctcgctcatcagggcaaggttctccccaatcgg 348
             |||||| ||| ||||||||||||||||||| |||||
Sbjct: 80812 gctctccctcgtcagggcaaggttctcccccatcgg 80847
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 413     gctgtcgccgcgcaggccggcga 435
               |||||||||||||||||||||||
Sbjct: 4207881 gctgtcgccgcgcaggccggcga 4207903
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>ref|XM_550543.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 609

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 430 cggcgatggcgccgacgaggccgccg 455
           |||||||||||||||||||| |||||
Sbjct: 73  cggcgatggcgccgacgagggcgccg 48
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>emb|AM085146.1| Magnetospirillum gryphiswaldense magnetosome island
          Length = 130000

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 99    ggtggccgccgcttccgccgcc 120
             ||||||||||||||||||||||
Sbjct: 25350 ggtggccgccgcttccgccgcc 25371
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 425     caggccggcgatggcgccgacg 446
               ||||||||||||||||||||||
Sbjct: 3458536 caggccggcgatggcgccgacg 3458557



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                           
Query: 94      ctgccggtggccgcc-gcttccgccgcc 120
               ||||||||||||||| ||||||||||||
Sbjct: 2733683 ctgccggtggccgcctgcttccgccgcc 2733710
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 430     cggcgatggcgccgacgaggccgccg 455
               |||||||||||||||||||| |||||
Sbjct: 1043951 cggcgatggcgccgacgagggcgccg 1043926
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>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0660D08
          Length = 146915

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 430   cggcgatggcgccgacgaggccgccg 455
             |||||||||||||||||||| |||||
Sbjct: 20174 cggcgatggcgccgacgagggcgccg 20149
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>dbj|AP003564.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0062J13
          Length = 152837

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 430    cggcgatggcgccgacgaggccgccg 455
              |||||||||||||||||||| |||||
Sbjct: 106824 cggcgatggcgccgacgagggcgccg 106799
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 416    gtcgccgcgcaggccggcgatggcgc 441
              |||| |||||||||||||||||||||
Sbjct: 148843 gtcggcgcgcaggccggcgatggcgc 148818
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>emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete chromosome; segment 7/12
          Length = 306250

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 428   gccggcgatggcgccgacgaggccgccgc 456
             |||||||| |||||||| |||||||||||
Sbjct: 44929 gccggcgaaggcgccgaagaggccgccgc 44901
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>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29
          Length = 292100

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 418   cgccgcgcaggccggcgatggcgccgacg 446
             |||||||||||||| || |||||||||||
Sbjct: 73955 cgccgcgcaggccgtcggtggcgccgacg 73983
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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 436     tggcgccgacgaggccgccg 455
               ||||||||||||||||||||
Sbjct: 1045738 tggcgccgacgaggccgccg 1045719
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>gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome 16, complete sequence
          Length = 212628

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     gcagctgcctttgctgcttt 40
              ||||||||||||||||||||
Sbjct: 109714 gcagctgcctttgctgcttt 109695
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>ref|XM_463191.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 363

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 424 gcaggccggcgatggcgccg 443
           ||||||||||||||||||||
Sbjct: 261 gcaggccggcgatggcgccg 280
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>gb|AF064864.1| Homo sapiens chromosome 21q22.3 PAC 21L13, complete sequence
          Length = 120007

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    tgcctttgctgcttttgctc 45
             ||||||||||||||||||||
Sbjct: 86621 tgcctttgctgcttttgctc 86640
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 431    ggcgatggcgccgacgaggccgcc 454
              ||||||||||||||||| ||||||
Sbjct: 451024 ggcgatggcgccgacgatgccgcc 451001
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>ref|NM_020433.4| Homo sapiens junctophilin 2 (JPH2), transcript variant 1, mRNA
          Length = 4802

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 426  aggccggcgatggcgccgacgaggccgc 453
            |||||| ||| |||||||||||||||||
Sbjct: 1676 aggccgccgagggcgccgacgaggccgc 1703
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>gb|AF287957.6| Homo sapiens chromosome 8 clone CTD-2541M15 map p23.1, complete
             sequence
          Length = 168136

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    ctgcctttgctgcttttgct 44
             ||||||||||||||||||||
Sbjct: 82592 ctgcctttgctgcttttgct 82611
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>emb|AL032644.1|CEY51H1A Caenorhabditis elegans YAC Y51H1A, complete sequence
          Length = 43666

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   tggccgccgcttccgccgcc 120
             ||||||||||||||||||||
Sbjct: 39748 tggccgccgcttccgccgcc 39729
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>emb|AL163283.2|HS21C083 Homo sapiens chromosome 21 segment HS21C083
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     tgcctttgctgcttttgctc 45
              ||||||||||||||||||||
Sbjct: 171884 tgcctttgctgcttttgctc 171903
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>emb|AL136324.6| Human DNA sequence from clone RP5-944H6 on chromosome 1p22.3-31.2
             Contains the 3' end of the PTGFR gene for prostaglandin,
             complete sequence
          Length = 135758

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 167   gcatagcaaggctgtggaggtcct 190
             |||| |||||||||||||||||||
Sbjct: 80804 gcattgcaaggctgtggaggtcct 80781
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>emb|AL034419.22|HS1108D11 Human DNA sequence from clone RP5-1108D11 on chromosome 20q12-13.11
              Contains the 3' end of the JPH2 gene for junctophilin 2
              (JP2, JP-2), the 3' end of the C20orf100 gene for a novel
              HMG (high mobility group) box protein similar to KIAA0737,
              KIAA0808 and TNRC9 (CAGF9) and two CpG islands, complete
              sequence
          Length = 152209

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 426    aggccggcgatggcgccgacgaggccgc 453
              |||||| ||| |||||||||||||||||
Sbjct: 148651 aggccgccgagggcgccgacgaggccgc 148624
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>emb|BX842606.1|OSJN00297 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1292H11, complete
              sequence
          Length = 152632

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    cgccgcttccgccgcccgct 124
              ||||||||||||||||||||
Sbjct: 105173 cgccgcttccgccgcccgct 105192
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>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 429    ccggcgatggcgccgacgaggccgccgc 456
              ||||||||| || |||||||||||||||
Sbjct: 242010 ccggcgatgccgtcgacgaggccgccgc 242037
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>emb|AL954235.1| Pan troglodytes chromosome 22 clone RP43-030A20 map 22q22.2-q22.3,
             complete sequence
          Length = 169458

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    tgcctttgctgcttttgctc 45
             ||||||||||||||||||||
Sbjct: 77709 tgcctttgctgcttttgctc 77728
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>gb|AC093318.52| Mus musculus strain C57BL/6J clone rp23-252h7 map 1, complete sequence
          Length = 198381

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    ctgcctttgctgcttttgct 44
             ||||||||||||||||||||
Sbjct: 36109 ctgcctttgctgcttttgct 36090
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>gb|AC099340.3| Homo sapiens BAC clone RP11-214O14 from 4, complete sequence
          Length = 164958

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 100    gtggccgccgcttccgccgcccgc 123
              |||||||||||| |||||||||||
Sbjct: 153456 gtggccgccgctgccgccgcccgc 153433
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>gb|AC061975.6| Homo sapiens chromosome 17, clone CTD-2008P7, complete sequence
          Length = 142163

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   ggaatgtggctctcctggcc 289
             ||||||||||||||||||||
Sbjct: 61005 ggaatgtggctctcctggcc 61024
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 100     gtggccgccgcttccgccgc 119
               ||||||||||||||||||||
Sbjct: 4107944 gtggccgccgcttccgccgc 4107963
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 418    cgccgcgcaggccggcgatggcgc 441
              ||||||||||||| ||||||||||
Sbjct: 478482 cgccgcgcaggcccgcgatggcgc 478505
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>emb|CR388456.1| Gallus gallus finished cDNA, clone ChEST583b15
          Length = 909

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 99  ggtggccgccgcttccgccg 118
           ||||||||||||||||||||
Sbjct: 40  ggtggccgccgcttccgccg 21
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>ref|NM_064511.2| Caenorhabditis elegans Y51H1A.7 (Y51H1A.7) mRNA, complete cds
          Length = 1255

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 101 tggccgccgcttccgccgcc 120
           ||||||||||||||||||||
Sbjct: 820 tggccgccgcttccgccgcc 801
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 105     cgccgcttccgccgcccgct 124
               ||||||||||||||||||||
Sbjct: 1446149 cgccgcttccgccgcccgct 1446168
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>dbj|AB076802.1| Ralstonia pickettii psdht gene for phenylserine dehydratase,
           complete cds
          Length = 1343

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 421 cgcgcaggccggcgatggcg 440
           ||||||||||||||||||||
Sbjct: 303 cgcgcaggccggcgatggcg 284
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 86      cgggctcgctgccggtggccgccg 109
               |||||| |||||||||||||||||
Sbjct: 7341783 cgggctggctgccggtggccgccg 7341760
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>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete
             cds
          Length = 77457

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   ccggctgtcgccgcgcaggc 429
             ||||||||||||||||||||
Sbjct: 76356 ccggctgtcgccgcgcaggc 76337
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>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1293_A01
          Length = 139121

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    gccgccgcttccgccgcccg 122
              ||||||||||||||||||||
Sbjct: 108634 gccgccgcttccgccgcccg 108653
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>gb|AE004984.1| Halobacterium sp. NRC-1 section 15 of 170 of the complete genome
          Length = 13961

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 86   cgggctcgctgccggtggccgccgcttc 113
            |||||||||||||||| |||| ||||||
Sbjct: 1096 cgggctcgctgccggtcgccgtcgcttc 1123
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>gb|AC148872.2| Chlamydomonas reinhardtii clone cr-25P21, complete sequence
          Length = 45702

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   gtggccgccgcttccgccgc 119
             ||||||||||||||||||||
Sbjct: 22732 gtggccgccgcttccgccgc 22751
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>gb|AC002094.1|AC002094 Genomic sequence from Human 17, complete sequence
          Length = 167101

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 270    ggaatgtggctctcctggcc 289
              ||||||||||||||||||||
Sbjct: 143940 ggaatgtggctctcctggcc 143959


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,900,381
Number of Sequences: 3902068
Number of extensions: 2900381
Number of successful extensions: 67484
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66386
Number of HSP's gapped (non-prelim): 1098
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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