ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast65e07 |
|---|---|
| Clone Library Name | barley_pub |
>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor| Length = 261 Score = 32.7 bits (73), Expect = 0.23 Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 6/33 (18%) Frame = +1 Query: 256 GHLPRPPVVG------PPKGHLPRPPVDGPPKG 336 G PRPPV G PP G PRPP PP G Sbjct: 38 GFQPRPPVNGSQQGPPPPGGPQPRPPQGPPPPG 70 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Frame = +1 Query: 256 GHLPRPPVVGPPK-GHLPRPPVDGPPKG 336 G PRPP PP G PRPP PP G Sbjct: 85 GPQPRPPQGPPPPGGPQPRPPQGPPPPG 112 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Frame = +1 Query: 256 GHLPRPPVVGPPK-GHLPRPPVDGPPKG 336 G PRPP PP G PRPP PP G Sbjct: 71 GPQPRPPQGPPPPGGPQPRPPQGPPPPG 98 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Frame = +1 Query: 256 GHLPRPPVVGPPK-GHLPRPPVDGPPKG 336 G PRPP PP G PRPP PP G Sbjct: 57 GPQPRPPQGPPPPGGPQPRPPQGPPPPG 84 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/27 (48%), Positives = 13/27 (48%) Frame = +1 Query: 256 GHLPRPPVVGPPKGHLPRPPVDGPPKG 336 G PRPP P G PRP PP G Sbjct: 169 GPQPRPPQGPPTTGPQPRPTQGPPPTG 195 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Frame = +1 Query: 256 GHLPRPPV-VGPPKGHLPRPPVDGPP 330 G PRPP PP G PRPP GPP Sbjct: 155 GPQPRPPQGPPPPAGPQPRPP-QGPP 179 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 286 PPKGHLPRPPVDGPPKG 336 PP G PRPPV+G +G Sbjct: 35 PPSGFQPRPPVNGSQQG 51
>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)| Length = 296 Score = 32.7 bits (73), Expect = 0.23 Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 6/33 (18%) Frame = +1 Query: 256 GHLPRPPVVG------PPKGHLPRPPVDGPPKG 336 G PRPPV G PP G PRPP PP G Sbjct: 17 GSQPRPPVNGSQQGPPPPGGPQPRPPQGPPPPG 49 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Frame = +1 Query: 256 GHLPRPPVVGPPK-GHLPRPPVDGPPKG 336 G PRPP PP G PRPP PP G Sbjct: 78 GPQPRPPQGPPPPGGPQPRPPQGPPPPG 105 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Frame = +1 Query: 256 GHLPRPPVVGPPK-GHLPRPPVDGPPKG 336 G PRPP PP G PRPP PP G Sbjct: 64 GPQPRPPQGPPPPGGPQPRPPQGPPPPG 91 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Frame = +1 Query: 256 GHLPRPPVVGPPK-GHLPRPPVDGPPKG 336 G PRPP PP G PRPP PP G Sbjct: 50 GPQPRPPQGPPPPGGPQPRPPQGPPPPG 77 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Frame = +1 Query: 256 GHLPRPPVVGPPK-GHLPRPPVDGPPKG 336 G PRPP PP G PRPP PP G Sbjct: 36 GPQPRPPQGPPPPGGPQPRPPQGPPPPG 63 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%) Frame = +1 Query: 256 GHLPRPPV-VGPPKGHLPRPPVDGPP 330 G PRPP PP G PRPP PP Sbjct: 134 GPQPRPPQGPPPPAGPQPRPPQGPPP 159 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/27 (48%), Positives = 13/27 (48%) Frame = +1 Query: 256 GHLPRPPVVGPPKGHLPRPPVDGPPKG 336 G PRP PP G PRP PP G Sbjct: 204 GPHPRPTQGPPPTGPQPRPTQGPPPTG 230 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 286 PPKGHLPRPPVDGPPKG 336 PP G PRPPV+G +G Sbjct: 14 PPSGSQPRPPVNGSQQG 30
>FXL16_RAT (Q5MJ12) F-box/LRR-repeat protein 16 (F-box and leucine-rich repeat| protein 16) (Spinal cord injury and regeneration-related protein 1) Length = 479 Score = 31.6 bits (70), Expect = 0.51 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +1 Query: 265 PRPPVVGPPKGHLPRPPVDGPP 330 P PP GP G +P PPV+ PP Sbjct: 73 PCPPASGPASGPVPGPPVERPP 94
>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6| Length = 545 Score = 31.2 bits (69), Expect = 0.67 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = +1 Query: 265 PRPP-VVGPPKGHLPRPPVDGPPKG 336 PRPP +GPP G P P + GPP G Sbjct: 321 PRPPGPLGPPLGLAPPPHMQGPPPG 345 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +1 Query: 265 PRPPVVGPPKGHLPRPPVDGPP 330 P PP GPP G P PP GPP Sbjct: 295 PPPPGYGPPPG--PPPPQQGPP 314
>MMP15_HUMAN (P51511) Matrix metalloproteinase-15 precursor (EC 3.4.24.-)| (MMP-15) (Membrane-type matrix metalloproteinase 2) (MT-MMP 2) (MTMMP2) (Membrane-type-2 matrix metalloproteinase) (MT2-MMP) (MT2MMP) (SMCP-2) Length = 669 Score = 31.2 bits (69), Expect = 0.67 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +1 Query: 265 PRPPVVGPPKGHLPRPPVDGPP 330 PRPP PP G RPP GPP Sbjct: 332 PRPPQPPPPGGKPERPPKPGPP 353
>ADP1_MYCPN (P11311) Adhesin P1 precursor (Cytadhesin P1) (Attachment protein)| Length = 1627 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/23 (60%), Positives = 15/23 (65%) Frame = +1 Query: 265 PRPPVVGPPKGHLPRPPVDGPPK 333 PRPPV PPK P+PPV P K Sbjct: 1605 PRPPV--PPKPGAPKPPVQPPKK 1625
>CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity factor 6| Length = 548 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 4/26 (15%) Frame = +1 Query: 265 PRPP----VVGPPKGHLPRPPVDGPP 330 PRPP +GPP HLP PP GPP Sbjct: 324 PRPPGPPMALGPPP-HLPGPPPGGPP 348 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +1 Query: 265 PRPPVVGPPKGHLPRPPVDGPP 330 P PP GPP G P PP GPP Sbjct: 297 PPPPGYGPPPG--PPPPQQGPP 316
>TCRG1_MOUSE (Q8CGF7) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) (p144) (Formin-binding protein 28) (FBP 28) Length = 1100 Score = 30.0 bits (66), Expect = 1.5 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPP 315 HL RPP + PP G +P PP Sbjct: 93 HLQRPPFMPPPMGAMPPPP 111 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = +1 Query: 271 PPVVGPPKGHLPRPPVDGPPKG 336 PP +GPP HL RPP PP G Sbjct: 86 PPPMGPP--HLQRPPFMPPPMG 105
>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 757 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 H+PRPP G P P PP PP Sbjct: 562 HIPRPPQPGSPNYCKPDPPPPPPP 585
>KCNC3_RAT (Q01956) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 889 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 H+PRPP G P P PP PP Sbjct: 563 HIPRPPQPGSPNYCKPDPPPPPPP 586
>RU1C_XENLA (Q03369) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)| (U1C protein) (U1-C) Length = 159 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%) Frame = +1 Query: 265 PRPPVVGPPK-GHLPRPPVDGPP 330 P P + GPP+ G +P PP+ GPP Sbjct: 79 PPPSLGGPPRPGMMPAPPMAGPP 101
>KCNC3_MOUSE (Q63959) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 769 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 H+PRPP G P P PP PP Sbjct: 562 HIPRPPQPGSPNYCKPDPPPPPPP 585
>GLU2_MAIZE (P04706) Glutelin-2 precursor (Zein-gamma) (27 kDa zein)| (Alcohol-soluble reduced glutelin) (ASG) (Zein ZC2) Length = 223 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/24 (66%), Positives = 16/24 (66%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 HLP PPV PP HLP PPV PP Sbjct: 53 HLP-PPVHLPPPVHLP-PPVHVPP 74 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/23 (60%), Positives = 14/23 (60%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGP 327 HLP PPV PP HLP PP P Sbjct: 65 HLP-PPVHVPPPVHLPPPPCHYP 86 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/24 (66%), Positives = 16/24 (66%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 HLP PPV PP HLP PPV PP Sbjct: 47 HLP-PPVHLPPPVHLP-PPVHLPP 68 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/24 (66%), Positives = 16/24 (66%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 HLP PPV PP HLP PPV PP Sbjct: 41 HLP-PPVHLPPPVHLP-PPVHLPP 62 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/24 (66%), Positives = 16/24 (66%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 HLP PPV PP HLP PPV PP Sbjct: 35 HLP-PPVHLPPPVHLP-PPVHLPP 56 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/25 (60%), Positives = 15/25 (60%) Frame = +1 Query: 256 GHLPRPPVVGPPKGHLPRPPVDGPP 330 G P PPV PP HLP PPV PP Sbjct: 27 GCQPPPPVHLPPPVHLP-PPVHLPP 50 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/24 (62%), Positives = 16/24 (66%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 HLP PPV PP H+P PPV PP Sbjct: 59 HLP-PPVHLPPPVHVP-PPVHLPP 80
>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein| Length = 346 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +1 Query: 262 LPRPPVVGPPKGHLPRPPVDGPP 330 +P PPVV PP ++P PPV PP Sbjct: 212 VPNPPVVIPPP-YVPSPPVVTPP 233 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +1 Query: 262 LPRPPVVGPPKGHLPRPPVDGPP 330 +P PP+V PP +P PPV PP Sbjct: 201 IPTPPIVSPP--FVPNPPVVIPP 221 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPPK 333 H+PRPP+V PP P P PPK Sbjct: 109 HVPRPPIVHPPPIVSP-PSTPKPPK 132
>TMC2_HUMAN (Q8TDI7) Transmembrane cochlear-expressed protein 2| Length = 906 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 2/19 (10%) Frame = +1 Query: 256 GHLP--RPPVVGPPKGHLP 306 GHLP RPP +GP GH P Sbjct: 869 GHLPISRPPGIGPDSGHAP 887
>WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11)| Length = 641 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/27 (55%), Positives = 15/27 (55%) Frame = +1 Query: 256 GHLPRPPVVGPPKGHLPRPPVDGPPKG 336 G LPR GPP G P PP GPP G Sbjct: 452 GPLPRLLPPGPPPGRPPGPP-PGPPPG 477 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/25 (56%), Positives = 14/25 (56%) Frame = +1 Query: 256 GHLPRPPVVGPPKGHLPRPPVDGPP 330 G P PP GPP G P PP GPP Sbjct: 465 GRPPGPPP-GPPPGLPPGPPPRGPP 488 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +1 Query: 262 LPRPPVVGPPKGHLPRPPVDGPPKG 336 +P PP +GPP RPP GPP G Sbjct: 407 MPGPPPLGPPPAPPLRPP--GPPTG 429
>WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)| Length = 641 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/27 (55%), Positives = 15/27 (55%) Frame = +1 Query: 256 GHLPRPPVVGPPKGHLPRPPVDGPPKG 336 G LPR GPP G P PP GPP G Sbjct: 452 GPLPRLLPPGPPPGRPPGPP-PGPPPG 477 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/25 (56%), Positives = 14/25 (56%) Frame = +1 Query: 256 GHLPRPPVVGPPKGHLPRPPVDGPP 330 G P PP GPP G P PP GPP Sbjct: 465 GRPPGPPP-GPPPGLPPGPPPRGPP 488 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +1 Query: 262 LPRPPVVGPPKGHLPRPPVDGPPKG 336 +P PP +GPP RPP GPP G Sbjct: 407 MPGPPPLGPPPAPPLRPP--GPPTG 429
>WBP11_HUMAN (Q9Y2W2) WW domain-binding protein 11 (WBP-11) (SH3 domain-binding| protein SNP70) (Npw38-binding protein) (NpwBP) Length = 641 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/27 (55%), Positives = 15/27 (55%) Frame = +1 Query: 256 GHLPRPPVVGPPKGHLPRPPVDGPPKG 336 G LPR GPP G P PP GPP G Sbjct: 452 GPLPRLLPPGPPPGRPPGPP-PGPPPG 477 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/25 (56%), Positives = 14/25 (56%) Frame = +1 Query: 256 GHLPRPPVVGPPKGHLPRPPVDGPP 330 G P PP GPP G P PP GPP Sbjct: 465 GRPPGPPP-GPPPGLPPGPPPRGPP 488 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +1 Query: 262 LPRPPVVGPPKGHLPRPPVDGPPKG 336 +P PP +GPP RPP GPP G Sbjct: 407 MPGPPPLGPPPAPPLRPP--GPPTG 429
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = +1 Query: 265 PRPPVVGPPKGHLPRPPVDGPP 330 P+PP PP P+PP PP Sbjct: 121 PKPPATKPPTYPTPKPPATKPP 142
>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)| Length = 640 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/25 (56%), Positives = 14/25 (56%) Frame = +1 Query: 256 GHLPRPPVVGPPKGHLPRPPVDGPP 330 G P PP GPP G P PP GPP Sbjct: 431 GRPPGPPP-GPPPGLPPGPPPRGPP 454 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = +1 Query: 256 GHLPRPPVVGPPKGHLPRPPVDGPPKG 336 G +PR GPP G P PP GPP G Sbjct: 418 GPMPRLLPPGPPPGRPPGPP-PGPPPG 443
>COT2_CHICK (Q90733) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)| Length = 410 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%) Frame = +1 Query: 265 PRPPVVGPPKG--HLPRPPVDGPP 330 P PPV GPP G H P+ P G P Sbjct: 25 PAPPVQGPPAGTPHTPQTPGPGGP 48
>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) Length = 1098 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPP 315 HL RPP + PP +P PP Sbjct: 93 HLQRPPFMPPPMSSMPPPP 111
>CPSF6_PONPY (Q5NVH8) Cleavage and polyadenylation specificity factor 6| Length = 552 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = +1 Query: 265 PRPP-VVGPPKGHLPRPPVDGPPKG 336 PRPP +GPP P P + GPP G Sbjct: 325 PRPPGPLGPPLTLAPPPHLPGPPPG 349
>CBPY_SCHPO (O13849) Carboxypeptidase Y precursor (EC 3.4.16.5) (CPY)| Length = 1002 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 H+P PP+ P H+P PP+ P Sbjct: 310 HMPPPPMHHEPGEHMPPPPMHHEP 333 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 H+P PP+ P H+P PP+ P Sbjct: 297 HMPPPPMHHEPGEHMPPPPMHHEP 320 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 H+P PP+ P H+P PP+ P Sbjct: 284 HMPPPPMHHEPGEHMPPPPMHHEP 307 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 H+P PP+ P H+P PP+ P Sbjct: 271 HMPPPPMHHEPGEHMPPPPMHHEP 294 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 H+P PP+ P H+P PP+ P Sbjct: 258 HMPPPPMHHEPGEHMPPPPMHHEP 281 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 H+P PP+ P H+P PP+ P Sbjct: 245 HMPPPPMHHEPGEHMPPPPMHHEP 268 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 H+P PP+ P H+P PP+ P Sbjct: 232 HMPPPPMHHEPGEHMPPPPMHHEP 255 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 H+P PP+ P H+P PP+ P Sbjct: 219 HMPPPPMHHEPGEHMPPPPMHHEP 242 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPP 330 H+P PP+ P H+P PP+ P Sbjct: 206 HMPPPPMHHKPGEHMPPPPMHHEP 229
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +1 Query: 256 GHLPRPPVVGPPKGHLPRPPVDGP 327 GHLP P +G G LP P GP Sbjct: 326 GHLPSPHAMGQGMGGLPPGPEKGP 349
>POXM_DROME (P23757) Paired box pox-meso protein (Paired box mesodermal| protein) Length = 402 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +1 Query: 19 PVHHHYHQLAAMAAS 63 P HHH+HQ AA AAS Sbjct: 223 PHHHHHHQSAAAAAS 237
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +1 Query: 256 GHLPRPPVVGPPKGHLPRPPVDGP 327 GHLP P +G G LP P GP Sbjct: 327 GHLPSPHAMGQGMGGLPPGPEKGP 350
>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) Length = 889 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/24 (45%), Positives = 12/24 (50%) Frame = +1 Query: 265 PRPPVVGPPKGHLPRPPVDGPPKG 336 P PP PP+ P PP PP G Sbjct: 23 PPPPPPAPPQQQPPPPPPPAPPPG 46
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/22 (50%), Positives = 11/22 (50%) Frame = +1 Query: 265 PRPPVVGPPKGHLPRPPVDGPP 330 P PP GPP P PP PP Sbjct: 63 PAPPSPGPPSPAPPSPPSPAPP 84
>OPSD_LOLSU (Q17094) Rhodopsin (Fragment)| Length = 439 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +1 Query: 271 PPVVGPPKGHLPRPPVDGPPKG 336 PP PP+G+ P PP PP+G Sbjct: 384 PPQGYPPQGYPPPPPQGYPPQG 405
>MMP15_MOUSE (O54732) Matrix metalloproteinase-15 precursor (EC 3.4.24.-)| (MMP-15) (Membrane-type matrix metalloproteinase 2) (MT-MMP 2) (MTMMP2) (Membrane-type-2 matrix metalloproteinase) (MT2-MMP) (MT2MMP) Length = 657 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/22 (54%), Positives = 12/22 (54%) Frame = +1 Query: 265 PRPPVVGPPKGHLPRPPVDGPP 330 PRPP P G RPP GPP Sbjct: 328 PRPPQPPHPGGKPERPPKPGPP 349
>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:| Proline-rich peptide SP-A (PRP-SP-A); Proline-rich peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)] Length = 676 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +1 Query: 265 PRPPVVGPPKGHLPRPPVDGPPK 333 P PP PP G P PP PP+ Sbjct: 646 PAPPGARPPPGPPPPPPGPSPPR 668 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%) Frame = +1 Query: 265 PRPPVVGPPKGHL--PRPPVDGPPKG 336 P PP +GH PRPP DGP +G Sbjct: 46 PPPPEESQGEGHQKRPRPPGDGPEQG 71
>PP1RA_XENLA (Q6GLQ4) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 Length = 819 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +1 Query: 259 HLPRPPVVGPPKGHLPRPPVDGPPKG 336 H P PP PP H P P +GP +G Sbjct: 643 HQPPPPHHQPPPPHYPPPGPNGPFQG 668
>OPSD_LOLFO (P24603) Rhodopsin| Length = 452 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +1 Query: 271 PPVVGPPKGHLPRPPVDGPPKG 336 PP PP+G+ P PP PP+G Sbjct: 391 PPQGYPPQGYPPPPPQGYPPQG 412
>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = +1 Query: 265 PRPP-VVGPPKGHLPRPPVDGPPKG 336 PRPP +GPP P P + GPP G Sbjct: 325 PRPPGPLGPPLTLAPPPHLPGPPPG 349
>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6| (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor Im 68-kDa subunit) (Protein HPBRII-4/7) Length = 551 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = +1 Query: 265 PRPP-VVGPPKGHLPRPPVDGPPKG 336 PRPP +GPP P P + GPP G Sbjct: 325 PRPPGPLGPPLTLAPPPHLPGPPPG 349
>CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = +1 Query: 265 PRPP-VVGPPKGHLPRPPVDGPPKG 336 PRPP +GPP P P + GPP G Sbjct: 325 PRPPGPLGPPLTLAPPPHLPGPPPG 349
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 6/30 (20%) Frame = +1 Query: 265 PRPPVVG------PPKGHLPRPPVDGPPKG 336 PRPP G PP PRPPV PP+G Sbjct: 389 PRPPPYGYQRGPLPPPRPTPRPPV--PPRG 416
>HRG_RABIT (Q28640) Histidine-rich glycoprotein precursor| (Histidine-proline-rich glycoprotein) (HPRG) (Fragment) Length = 526 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 2/27 (7%) Frame = +1 Query: 256 GHLPR--PPVVGPPKGHLPRPPVDGPP 330 GH P PP PP G PR P GPP Sbjct: 342 GHHPHGPPPHGHPPHGPPPRHPPHGPP 368
>WASP_HUMAN (P42768) Wiskott-Aldrich syndrome protein (WASp)| Length = 501 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%) Frame = +1 Query: 262 LPRPPVVGPPKGHL-PRPPV 318 LPRPP+VG KG P PPV Sbjct: 325 LPRPPIVGGNKGRSGPLPPV 344 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.138 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,335,462 Number of Sequences: 219361 Number of extensions: 226145 Number of successful extensions: 2986 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 2054 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2916 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits)
