ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast65e03 |
|---|---|
| Clone Library Name | barley_pub |
>S17P_WHEAT (P46285) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor| (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) Length = 393 Score = 206 bits (523), Expect(2) = 4e-56 Identities = 103/103 (100%), Positives = 103/103 (100%) Frame = +1 Query: 121 TRSPACCAAMSFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCA 300 TRSPACCAAMSFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCA Sbjct: 15 TRSPACCAAMSFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCA 74 Query: 301 IGDSLEEFLTKATPDKNLIRLLICMGEAMRTIAFKVRTASCGG 429 IGDSLEEFLTKATPDKNLIRLLICMGEAMRTIAFKVRTASCGG Sbjct: 75 IGDSLEEFLTKATPDKNLIRLLICMGEAMRTIAFKVRTASCGG 117 Score = 31.6 bits (70), Expect(2) = 4e-56 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = +3 Query: 441 HSFGDEQLAVDMLAD 485 +SFGDEQLAVDMLAD Sbjct: 122 NSFGDEQLAVDMLAD 136
>S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor| (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) Length = 387 Score = 91.7 bits (226), Expect(2) = 4e-21 Identities = 46/80 (57%), Positives = 58/80 (72%) Frame = +1 Query: 190 ATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCAIGDSLEEFLTKATPDKNLIRLLI 369 ++S +GESLR T + + A ++L T+C +GDSLEEFL KAT DK LIRL++ Sbjct: 37 SSSLFGESLRMTTKSSV-----RVNKAKNSSLVTKCELGDSLEEFLAKATTDKGLIRLMM 91 Query: 370 CMGEAMRTIAFKVRTASCGG 429 CMGEA+RTI FKVRTASCGG Sbjct: 92 CMGEALRTIGFKVRTASCGG 111 Score = 28.5 bits (62), Expect(2) = 4e-21 Identities = 11/15 (73%), Positives = 15/15 (100%) Frame = +3 Query: 441 HSFGDEQLAVDMLAD 485 ++FGDEQLA+D+LAD Sbjct: 116 NTFGDEQLAIDVLAD 130
>S17P_ARATH (P46283) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor| (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) Length = 393 Score = 86.7 bits (213), Expect(2) = 2e-20 Identities = 54/103 (52%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Frame = +1 Query: 124 RSPACCAAMSFSQSYRPKAARPATSFYGESLRANTARTSFPAGRQSKAASRAALT-TRCA 300 RS + S+S S K + ++S +G+SLR ++ A +KA S A T T+C Sbjct: 21 RSSTLVSPPSYSTSSSFKRLK-SSSIFGDSLRL-APKSQLKA---TKAKSNGASTVTKCE 75 Query: 301 IGDSLEEFLTKATPDKNLIRLLICMGEAMRTIAFKVRTASCGG 429 IG SLEEFL +ATPDK L LL+CMGEA+RTIAFKVRTASCGG Sbjct: 76 IGQSLEEFLAQATPDKGLRTLLMCMGEALRTIAFKVRTASCGG 118 Score = 31.6 bits (70), Expect(2) = 2e-20 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = +3 Query: 441 HSFGDEQLAVDMLAD 485 +SFGDEQLAVDMLAD Sbjct: 123 NSFGDEQLAVDMLAD 137
>S17P_CHLRE (P46284) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor| (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) Length = 389 Score = 67.8 bits (164), Expect(2) = 1e-14 Identities = 39/84 (46%), Positives = 53/84 (63%) Frame = +1 Query: 178 AARPATSFYGESLRANTARTSFPAGRQSKAASRAALTTRCAIGDSLEEFLTKATPDKNLI 357 A+ A++F G ++ A ++ A QS+ R A+ T+ IGDSL EFL +ATPD L Sbjct: 37 ASANASAFKGAAVTARVKASTRAARVQSR---RTAVLTQAKIGDSLAEFLVEATPDPKLR 93 Query: 358 RLLICMGEAMRTIAFKVRTASCGG 429 +++ M EA RTIA KVRTASC G Sbjct: 94 HVMMSMAEATRTIAHKVRTASCAG 117 Score = 30.4 bits (67), Expect(2) = 1e-14 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = +3 Query: 441 HSFGDEQLAVDMLAD 485 +SFGDEQLAVDM+AD Sbjct: 122 NSFGDEQLAVDMVAD 136
>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor| Length = 839 Score = 35.4 bits (80), Expect = 0.082 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = +3 Query: 228 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGV--PDQGDAGQEPHQAADLHGGGDEDDRL 401 G+ G + Q G+ + ++P + QPG + P QG GQ+P QA G Sbjct: 185 GQQPGQGQQGQQPGQGQPGYYPTSSQLQPGQLQQPAQGQQGQQPGQAQQGQQPGQGQQPG 244 Query: 402 QGQDG 416 QGQ G Sbjct: 245 QGQQG 249 Score = 32.3 bits (72), Expect = 0.70 Identities = 20/66 (30%), Positives = 28/66 (42%) Frame = +3 Query: 213 AAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDED 392 A G+ G+ + G + Q G+ + P + Q G P QG GQ+P Q G Sbjct: 586 AQGQQGQQLGQGQQGQQPGQGQQGQQPAQ--GQQGQQPGQGQHGQQPGQGQQGQQPGQGQ 643 Query: 393 DRLQGQ 410 QGQ Sbjct: 644 QPGQGQ 649
>EM3_WHEAT (Q08000) Em protein H2| Length = 93 Score = 33.1 bits (74), Expect = 0.41 Identities = 21/61 (34%), Positives = 28/61 (45%) Frame = +3 Query: 228 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQG 407 GE VVPGG GG+S AH + R GG + G+E + GG +D G Sbjct: 18 GETVVPGGT---GGKSLEAHENLAEGRSRGGQTRREQMGEEGYSEMGRKGGLSTNDESGG 74 Query: 408 Q 410 + Sbjct: 75 E 75
>LE19B_HORVU (P46532) Late embryogenesis abundant protein B19.1B| Length = 93 Score = 32.7 bits (73), Expect = 0.53 Identities = 21/61 (34%), Positives = 28/61 (45%) Frame = +3 Query: 228 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQG 407 GE VVPGG GG+S AH + R GG + G+E + GG +D G Sbjct: 18 GETVVPGGT---GGKSLEAHDNLAEGRSRGGQTRREQMGEEGYSEMGRKGGLSTNDESGG 74 Query: 408 Q 410 + Sbjct: 75 E 75
>GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW212 precursor| Length = 838 Score = 32.3 bits (72), Expect = 0.70 Identities = 24/81 (29%), Positives = 34/81 (41%) Frame = +3 Query: 174 QGCQAGDLVLRRVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEP 353 QG Q G L ++ A G+ G+ + G + Q + + P + Q G QG GQ+P Sbjct: 553 QGQQPGQL--QQPAQGQQGQQLAQGQQGQQPAQVQQGQQPAQ--GQQGQQLGQGQQGQQP 608 Query: 354 HQAADLHGGGDEDDRLQGQDG 416 Q G QGQ G Sbjct: 609 GQGQQPAQGQQGQQPGQGQQG 629
>COHA1_MESAU (Q9JMH4) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)| (180 kDa bullous pemphigoid antigen 2) Length = 1431 Score = 32.3 bits (72), Expect = 0.70 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 219 GEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVP 326 G+ G+ VPG + GG S G YR+ P G P Sbjct: 948 GDQGDPGVPGTPGIPGGHSHGESSSTTYRQGPPGPP 983
>SODC_HORSE (P00443) Superoxide dismutase [Cu-Zn] (EC 1.15.1.1)| Length = 153 Score = 32.0 bits (71), Expect = 0.91 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 9/101 (8%) Frame = +3 Query: 183 QAGDLVLRR----VAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQE 350 + G +VL+ + G+HG V G+ QG + GAH ++ G ++ G Sbjct: 25 EGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDL 84 Query: 351 PHQAADLHGGGDEDDR-----LQGQDGVLRRHRLRHSFGDE 458 + AD +G D D + L G+ ++ R + H D+ Sbjct: 85 GNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDD 125
>NCKX1_BOVIN (Q28139) Sodium/potassium/calcium exchanger 1| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) Length = 1216 Score = 31.6 bits (70), Expect = 1.2 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +3 Query: 213 AAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVP-----DQGDAGQEPHQAADLHG 377 A GE+GE GG+A GGES G G +P D D G+ + ++ G Sbjct: 758 AEGENGER--SGGDAALGGESEGKAE----NESEGDIPAERRGDDEDEGEIQAEGGEVKG 811 Query: 378 GGDEDDRLQGQDG 416 DE + G+ G Sbjct: 812 DEDEGEIQAGEGG 824
>LE19A_HORVU (Q05190) Late embryogenesis abundant protein B19.1A (B19.1)| Length = 93 Score = 31.6 bits (70), Expect = 1.2 Identities = 21/61 (34%), Positives = 27/61 (44%) Frame = +3 Query: 228 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQG 407 GE VVPGG GG+S A + R GG + GQE + GG +D G Sbjct: 18 GETVVPGGT---GGKSLEAQQNLAEGRSRGGQTRREQMGQEGYSEMGRKGGLSSNDESGG 74 Query: 408 Q 410 + Sbjct: 75 E 75
>NCKX1_BISBI (O46383) Sodium/potassium/calcium exchanger 1| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) (Fragment) Length = 300 Score = 31.6 bits (70), Expect = 1.2 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +3 Query: 213 AAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVP-----DQGDAGQEPHQAADLHG 377 A GE+GE GG+A GGES G G +P D D G+ + ++ G Sbjct: 26 AEGENGER--SGGDAALGGESEGKAE----NESEGDIPAERRGDDEDEGEIQAEGGEVKG 79 Query: 378 GGDEDDRLQGQDG 416 DE + G+ G Sbjct: 80 DEDEGEIQAGEGG 92
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 30.8 bits (68), Expect = 2.0 Identities = 23/72 (31%), Positives = 27/72 (37%) Frame = +3 Query: 207 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGD 386 R AAGE G D VPGG ++G PGG G G Q G Sbjct: 518 RGAAGEPGRDGVPGGPGMRGMPG-----------SPGGPGSDGKPGPPGSQGESGRPGPP 566 Query: 387 EDDRLQGQDGVL 422 +GQ GV+ Sbjct: 567 GPSGPRGQPGVM 578
>WDR50_MOUSE (Q5SSI6) WD-repeat protein 50| Length = 552 Score = 30.8 bits (68), Expect = 2.0 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +3 Query: 300 YRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQ 404 ++ GGVPD +AG + ++D DEDD LQ Sbjct: 181 FQHAMGGVPDWAEAGSKRRTSSDDESEEDEDDLLQ 215
>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)| (180 kDa bullous pemphigoid antigen 2) Length = 1470 Score = 30.8 bits (68), Expect = 2.0 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 219 GEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVP 326 G+ G+ VPG + GG S GA Y + P G P Sbjct: 951 GDQGDPGVPGTPGISGGLSHGASSSTLYMQGPPGPP 986
>SEEP_RAPSA (P11573) Late seed maturation protein P8B6| Length = 83 Score = 30.4 bits (67), Expect = 2.7 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +3 Query: 228 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGG--DEDDRL 401 GE VVPGG GG+S A + R GG + G E +Q GG D+ D+ Sbjct: 17 GETVVPGGT---GGKSFEAQQHLAEGRSRGGNTRKEQLGSEGYQQMGRKGGSTPDKTDKE 73 Query: 402 QGQD 413 +D Sbjct: 74 DAED 77
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 30.4 bits (67), Expect = 2.7 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +3 Query: 243 PG-GEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQG 407 PG G +G E RG PGG+ G HQ HG GDE DR++G Sbjct: 1043 PGRGHVGRGEEGRGVG--------PGGLAGAGPVHAVAHQRR--HGAGDEGDRVRG 1088
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 30.4 bits (67), Expect = 2.7 Identities = 24/71 (33%), Positives = 28/71 (39%) Frame = +3 Query: 207 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGD 386 R A GE GE PG + G P QPG +QG+AGQ+ A G Sbjct: 749 RGAPGERGETGPPGTSGIAG--------PPGADGQPGAKGEQGEAGQKGDAGAPGPQGPS 800 Query: 387 EDDRLQGQDGV 419 QG GV Sbjct: 801 GAPGPQGPTGV 811
>DBPA_HUMAN (P16989) DNA-binding protein A (Cold shock domain-containing| protein A) (Single-strand DNA-binding protein NF-GMB) Length = 372 Score = 30.4 bits (67), Expect = 2.7 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = +3 Query: 207 RVAAGEHGE--DVVPGGEAVQGGESRGAHHPVRYRR----QPGGVPDQGDAGQEPHQAA 365 R+ AGE GE D VP G +QG R + RYR +P P G+A + +Q A Sbjct: 258 RIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQA 316
>ALGE4_AZOVI (Q44493) Poly(beta-D-mannuronate) C5 epimerase 4 (EC 5.1.3.-)| (Mannuronan epimerase 4) Length = 553 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = +3 Query: 309 QPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQGQDGVLRRHRLRHSFGDEQL 464 +PG P Q G + GGD DD+LQG G RL GD+ L Sbjct: 376 EPGATPQQPSTGSDGEPLV----GGDTDDQLQGGSGA---DRLDGGAGDDIL 420
>SPT6H_CAEEL (P34703) Suppressor of Ty 6 homolog (Abnormal embryogenesis protein| 5) Length = 1521 Score = 30.0 bits (66), Expect = 3.5 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = +3 Query: 303 RRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQGQDGVLRRHRLRHSFGDEQL 464 RR+ G D+G G E ++ EDD ++ RRHR RH GDE L Sbjct: 148 RRKDRGRGDRGGYGSESERS--------EDDFIEDDGDAPRRHRKRHR-GDENL 192
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 30.0 bits (66), Expect = 3.5 Identities = 25/71 (35%), Positives = 27/71 (38%) Frame = +3 Query: 207 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGD 386 R A GE GE PG G P QPG DQG+AGQ+ A G Sbjct: 750 RGAPGERGETGPPGPAGFAG--------PPGADGQPGAKGDQGEAGQKGDAGAPGPQGPS 801 Query: 387 EDDRLQGQDGV 419 QG GV Sbjct: 802 GAPGPQGPTGV 812
>CD2A2_MONDO (O77618) Cyclin-dependent kinase inhibitor 2A, isoform 2 (p19ARF)| Length = 155 Score = 30.0 bits (66), Expect = 3.5 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Frame = +3 Query: 195 LVLRRVAAGEHGED---VVPGGE--AVQGGESRGAH---HPVRYRRQPGGVPDQGDAGQE 350 +V ++ G G D PG AV+GG HP RR PGG+P DA Sbjct: 49 IVRKKRHRGRSGHDDGQCTPGSNPVAVRGGTQHPRPDNPHPASPRRCPGGLPGHSDAAPS 108 Query: 351 PHQAADLHG 377 AA G Sbjct: 109 GRGAAGCQG 117
>EMP1_ORYSA (P46520) Embryonic abundant protein 1| Length = 95 Score = 29.6 bits (65), Expect = 4.5 Identities = 24/76 (31%), Positives = 33/76 (43%) Frame = +3 Query: 183 QAGDLVLRRVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQA 362 Q G L R+A G+ VVPGG GG+S A + R GG + G+E ++ Sbjct: 7 QQGRSELDRMA--REGQTVVPGGT---GGKSLEAQENLAEGRSRGGQTRKEQMGEEGYRE 61 Query: 363 ADLHGGGDEDDRLQGQ 410 GG D G+ Sbjct: 62 MGRKGGLSTGDESGGE 77
>EM2_WHEAT (P22701) Em protein CS41| Length = 94 Score = 29.6 bits (65), Expect = 4.5 Identities = 24/80 (30%), Positives = 34/80 (42%) Frame = +3 Query: 171 AQGCQAGDLVLRRVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQE 350 A G + G L +A G+ VVPGG GG+S A + R GG + G+E Sbjct: 2 ASGQEKGRSELDSLA--REGQTVVPGGT---GGKSYEAQEKLAEGRSRGGQTRKEQMGEE 56 Query: 351 PHQAADLHGGGDEDDRLQGQ 410 + GG +D G+ Sbjct: 57 GYSEMGRKGGLSTNDESGGE 76
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 29.6 bits (65), Expect = 4.5 Identities = 21/58 (36%), Positives = 21/58 (36%) Frame = +3 Query: 243 PGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQGQDG 416 PG G S G P R PGG P G AG GG D R QG G Sbjct: 214 PGNNPFTSGGSTGMARPQAPR--PGGAPRPGGAGAPGGPRPQGAGGQDRAPRPQGGPG 269
>AROB_XANAC (Q8PI87) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 370 Score = 29.6 bits (65), Expect = 4.5 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = +1 Query: 157 SQSYRPKAARPATSFYGESLRANTAR-TSFPAGRQSKAASRAALTTRCAIGDSLEEFLTK 333 S+S A+P T L A+ AR S GR + S + + A G + L++ Sbjct: 7 SRSVDVDGAQPYTITIAPGLLADGARLASHVRGRHALLLSDSQVAPHYAAG--VRAALSR 64 Query: 334 ATPDKNLIRLLICMGEAMRTI 396 A PD + L+I GEA +T+ Sbjct: 65 ARPDLQVGELVIAAGEASKTL 85
>EM1_WHEAT (P04568) Em protein| Length = 93 Score = 29.3 bits (64), Expect = 5.9 Identities = 20/60 (33%), Positives = 26/60 (43%) Frame = +3 Query: 228 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQG 407 GE VVPGG GG+S A + R GG + G+E + GG +D G Sbjct: 18 GETVVPGGT---GGKSLEAQENLAEGRSRGGQTRREQMGEEGYSQMGRKGGLSTNDESGG 74
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 29.3 bits (64), Expect = 5.9 Identities = 25/71 (35%), Positives = 27/71 (38%) Frame = +3 Query: 207 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGD 386 R A GE GE PG G P QPG DQG+AGQ+ A G Sbjct: 790 RGAPGEPGETGPPGPAGFAG--------PPGADGQPGAKGDQGEAGQKGDAGAPGPQGPS 841 Query: 387 EDDRLQGQDGV 419 QG GV Sbjct: 842 GAPGPQGPTGV 852
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 29.3 bits (64), Expect = 5.9 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 9/75 (12%) Frame = +3 Query: 261 QGGESRGAHHPVRYR--RQPG---GVPDQGDAGQEPHQAADLHGGGDEDDRL----QGQD 413 +G R + H R QPG G ++G AG +PH+ GG + R G D Sbjct: 895 EGPYGRESDHHAREGSLEQPGFWEGEAERGKAG-DPHRRHVHRQGGSRESRSGSPRTGAD 953 Query: 414 GVLRRHRLRHSFGDE 458 G RRHR G+E Sbjct: 954 GEHRRHRAHRRPGEE 968
>SOX10_HUMAN (P56693) Transcription factor SOX-10| Length = 466 Score = 29.3 bits (64), Expect = 5.9 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Frame = +3 Query: 204 RRVAAGEHGEDVVPGGEAVQGGESR-GAHHPVRY--RRQPGGVPDQGDAGQEPHQAADLH 374 R+ GE PGGEA QGG + AH+ + R PG D G H + H Sbjct: 178 RKNGKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSD-GNPEHPSGQSH 236 Query: 375 G 377 G Sbjct: 237 G 237
>EMB5_MAIZE (P46517) Late embryogenesis abundant protein EMB564| Length = 91 Score = 28.9 bits (63), Expect = 7.7 Identities = 20/61 (32%), Positives = 26/61 (42%) Frame = +3 Query: 228 GEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGDEDDRLQG 407 GE VVPGG GG+S A + R GG + GQ+ + GG D G Sbjct: 18 GETVVPGGT---GGKSVEAQEHLAEGRSRGGQTRREQLGQQGYSEMGKKGGLSTTDESGG 74 Query: 408 Q 410 + Sbjct: 75 E 75
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 28.9 bits (63), Expect = 7.7 Identities = 21/72 (29%), Positives = 26/72 (36%) Frame = +3 Query: 207 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGD 386 R AGE G D PGG ++G PGG + G G Q G Sbjct: 517 RGVAGEPGRDGTPGGPGIRGMPG-----------SPGGPGNDGKPGPPGSQGESGRPGPP 565 Query: 387 EDDRLQGQDGVL 422 +GQ GV+ Sbjct: 566 GPSGPRGQPGVM 577
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 28.9 bits (63), Expect = 7.7 Identities = 21/72 (29%), Positives = 26/72 (36%) Frame = +3 Query: 207 RVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGGD 386 R AGE G D PGG ++G PGG + G G Q G Sbjct: 517 RGVAGEPGRDGTPGGPGIRGMPG-----------SPGGPGNDGKPGPPGSQGESGRPGPP 565 Query: 387 EDDRLQGQDGVL 422 +GQ GV+ Sbjct: 566 GPSGPRGQPGVM 577
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 28.9 bits (63), Expect = 7.7 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 7/73 (9%) Frame = +3 Query: 219 GEHGEDVVPGGEAVQG-------GESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHG 377 G GE +PGG G S G P PG V G+AG++ H D Sbjct: 868 GTRGERGLPGGPGSNGEPGPSGLAGSSGPRGPPGSVGSPGPVGHSGEAGRDGHPGNDGPP 927 Query: 378 GGDEDDRLQGQDG 416 G D +G+ G Sbjct: 928 GRDGLPGAKGERG 940
>IR09_HCMVA (P16807) Hypothetical protein IRL9 (TRL9)| Length = 143 Score = 28.9 bits (63), Expect = 7.7 Identities = 22/70 (31%), Positives = 31/70 (44%) Frame = +3 Query: 204 RRVAAGEHGEDVVPGGEAVQGGESRGAHHPVRYRRQPGGVPDQGDAGQEPHQAADLHGGG 383 RR G G+ G EA + YR+ PG + ++ GQ+P D +G Sbjct: 75 RRSGRGPVGD----GREASRTAAEEKRRRKENYRQGPGFLLEKQHVGQDP----DANGNH 126 Query: 384 DEDDRLQGQD 413 D+DD GQD Sbjct: 127 DDDDH-AGQD 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,962,990 Number of Sequences: 219361 Number of extensions: 788265 Number of successful extensions: 3731 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 3490 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3703 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
