ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast65e01 |
|---|---|
| Clone Library Name | barley_pub |
>MYH2_HUMAN (Q9UKX2) Myosin heavy chain, skeletal muscle, adult 2 (Myosin heavy| chain IIa) (MyHC-IIa) Length = 1941 Score = 32.3 bits (72), Expect = 0.59 Identities = 14/43 (32%), Positives = 29/43 (67%) Frame = +1 Query: 325 ERKLDRLVVEMQGQMERVVWENRDLEQRLRVALKEKATMEDIL 453 ++KL+ + +MQG+ME ++ E R+ E++ + A+ + A M + L Sbjct: 1733 KKKLETDISQMQGEMEDILQEARNAEEKAKKAITDAAMMAEEL 1775
>MYSS_RABIT (P02562) Myosin heavy chain, skeletal muscle (Fragments)| Length = 1084 Score = 32.0 bits (71), Expect = 0.78 Identities = 14/43 (32%), Positives = 29/43 (67%) Frame = +1 Query: 325 ERKLDRLVVEMQGQMERVVWENRDLEQRLRVALKEKATMEDIL 453 ++KL+ + ++QG+ME +V E R+ E++ + A+ + A M + L Sbjct: 876 KKKLETDISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEEL 918
>MYH4_RABIT (Q28641) Myosin-4 (Myosin heavy chain, skeletal muscle, juvenile)| Length = 1938 Score = 32.0 bits (71), Expect = 0.78 Identities = 14/43 (32%), Positives = 29/43 (67%) Frame = +1 Query: 325 ERKLDRLVVEMQGQMERVVWENRDLEQRLRVALKEKATMEDIL 453 ++KL+ + ++QG+ME +V E R+ E++ + A+ + A M + L Sbjct: 1730 KKKLETDISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEEL 1772
>MYH4_MOUSE (Q5SX39) Myosin-4 (Myosin heavy chain, skeletal muscle, fetal)| Length = 1939 Score = 32.0 bits (71), Expect = 0.78 Identities = 14/43 (32%), Positives = 29/43 (67%) Frame = +1 Query: 325 ERKLDRLVVEMQGQMERVVWENRDLEQRLRVALKEKATMEDIL 453 ++KL+ + ++QG+ME +V E R+ E++ + A+ + A M + L Sbjct: 1731 KKKLETDISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEEL 1773
>MYH4_HUMAN (Q9Y623) Myosin-4 (Myosin heavy chain, skeletal muscle, fetal)| (Myosin heavy chain IIb) (MyHC-IIb) Length = 1939 Score = 32.0 bits (71), Expect = 0.78 Identities = 14/43 (32%), Positives = 29/43 (67%) Frame = +1 Query: 325 ERKLDRLVVEMQGQMERVVWENRDLEQRLRVALKEKATMEDIL 453 ++KL+ + ++QG+ME +V E R+ E++ + A+ + A M + L Sbjct: 1731 KKKLETDISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEEL 1773
>MYH1_MOUSE (Q5SX40) Myosin-1 (Myosin heavy chain, skeletal muscle, adult 1)| Length = 1942 Score = 32.0 bits (71), Expect = 0.78 Identities = 14/43 (32%), Positives = 29/43 (67%) Frame = +1 Query: 325 ERKLDRLVVEMQGQMERVVWENRDLEQRLRVALKEKATMEDIL 453 ++KL+ + ++QG+ME +V E R+ E++ + A+ + A M + L Sbjct: 1734 KKKLETDISQIQGEMEDIVQEARNAEEKAKKAITDAAMMAEEL 1776
>BMP8A_MOUSE (P34821) Bone morphogenetic protein 8A precursor (BMP-8A)| (Osteogenic protein 2) (OP-2) Length = 399 Score = 32.0 bits (71), Expect = 0.78 Identities = 19/39 (48%), Positives = 20/39 (51%) Frame = -2 Query: 231 GGHSQAPERTSAARRDGARRRKHAQRRISAQLCSGQAGR 115 GGH P T RR GAR R+ QR I A L G GR Sbjct: 20 GGHGPRPPHTCPQRRLGARERRDMQREILAVL--GLPGR 56
>MYH1_HUMAN (P12882) Myosin-1 (Myosin heavy chain, skeletal muscle, adult 1)| (Myosin heavy chain IIx/d) (MyHC-IIx/d) Length = 1939 Score = 31.6 bits (70), Expect = 1.0 Identities = 13/43 (30%), Positives = 29/43 (67%) Frame = +1 Query: 325 ERKLDRLVVEMQGQMERVVWENRDLEQRLRVALKEKATMEDIL 453 ++KL+ + ++QG+ME ++ E R+ E++ + A+ + A M + L Sbjct: 1731 KKKLETDISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEEL 1773
>Y1728_MYCBO (P64886) Hypothetical protein Rv1792c/MT1741/Mb1728c| Length = 454 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -2 Query: 192 RRDGARRRKHAQRRISAQLCSGQAGRHHSLPLSTTVAT 79 R G R + A LCSG+ G+H+ LP + V+T Sbjct: 258 RSAGQRHHDGLLAALRALLCSGELGQHNGLPAAIIVST 295
>Y1702_MYCTU (P64885) Hypothetical protein Rv1792c/MT1741/Mb1728c| Length = 454 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -2 Query: 192 RRDGARRRKHAQRRISAQLCSGQAGRHHSLPLSTTVAT 79 R G R + A LCSG+ G+H+ LP + V+T Sbjct: 258 RSAGQRHHDGLLAALRALLCSGELGQHNGLPAAIIVST 295
>MRS2_ASPFU (Q4WCV3) Inner membrane magnesium transporter mrs2, mitochondrial| precursor (RNA-splicing protein mrs2) Length = 597 Score = 30.0 bits (66), Expect = 2.9 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 5/48 (10%) Frame = -2 Query: 222 SQAPERT----SAARRDGARRRKHAQRRISAQLCSGQAGRHHSL-PLS 94 + AP RT S R R H+ R LC+GQAGR S+ PLS Sbjct: 64 ASAPHRTTLQTSLVRTPTPAARSHSSSRPRLWLCAGQAGRSSSIFPLS 111
>SKIL_PONPY (Q5R431) Ski-like protein (Ski-related protein)| Length = 684 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/45 (31%), Positives = 27/45 (60%) Frame = +1 Query: 325 ERKLDRLVVEMQGQMERVVWENRDLEQRLRVALKEKATMEDILDE 459 +++L+ L E +ME E +DLE++L +K+K T + L++ Sbjct: 579 QKELESLQNEHAQRMEEFYVEQKDLEKKLEQIMKQKCTCDSNLEK 623
>SKIL_HUMAN (P12757) Ski-like protein (Ski-related protein) (Ski-related| oncogene) Length = 684 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/45 (31%), Positives = 27/45 (60%) Frame = +1 Query: 325 ERKLDRLVVEMQGQMERVVWENRDLEQRLRVALKEKATMEDILDE 459 +++L+ L E +ME E +DLE++L +K+K T + L++ Sbjct: 579 QKELESLQNEHAQRMEEFYVEQKDLEKKLEQIMKQKCTCDSNLEK 623
>ODO1_COXBU (P51056) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 934 Score = 29.6 bits (65), Expect = 3.8 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 75 QEWRQ*WRVAENGGARPDQSRAELRSSF 158 +EWR +R NG + PD S A +R F Sbjct: 39 EEWRSYFRTLTNGASTPDISHATIREEF 66
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 29.3 bits (64), Expect = 5.0 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +2 Query: 2 PIIPLLAPRHGRRACLWLSLSRELPRVATVVESG 103 P++P RHGRR + ++S E+PR+A SG Sbjct: 31 PLLP--GERHGRRKVVVAAISEEVPRLAASPSSG 62
>HIG_DROME (Q09101) Locomotion-related protein Hikaru genki precursor| Length = 958 Score = 29.3 bits (64), Expect = 5.0 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -2 Query: 261 VAEEEHREADGGHSQAPE--RTSAARRDGARRRKHAQRRISAQLCSGQAGR 115 V +++ + D H PE R +A R+ G RRR + RR + +GQ GR Sbjct: 128 VGDDDLGDEDEDHHGDPEDKRLNANRKQGKRRRAGSGRRRRIENENGQTGR 178
>US02_EHV1B (P28964) Gene 68 protein| Length = 418 Score = 29.3 bits (64), Expect = 5.0 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = +3 Query: 96 RVAENGGARPDQSRAELRSSFVHASFSLLRRGVRRSCVPALG-CGRRQPP 242 R +E G ARP+ + A R+ VH G RR P G G R+PP Sbjct: 241 RPSEGGDARPEAALARSRARSVH--------GRRRDAAPPRGPAGARRPP 282
>MYSC_CHICK (P29616) Myosin heavy chain, cardiac muscle isoform (Fragment)| Length = 1102 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/45 (28%), Positives = 29/45 (64%) Frame = +1 Query: 319 DRERKLDRLVVEMQGQMERVVWENRDLEQRLRVALKEKATMEDIL 453 ++++KL+ + +MQ ++E + E R+ EQ+ + A+ + A M + L Sbjct: 891 NQKKKLEGDISQMQNEVEESIQECRNAEQKAKKAITDAAMMAEEL 935
>ZF106_HUMAN (Q9H2Y7) Zinc finger protein 106 homolog (Zfp-106) (Zinc finger| protein 474) Length = 1883 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = -3 Query: 170 GSMHKGGSQLSSALVRPGATILCHSPLLSPLLVAHAKEITTGTHAGRVVEQGE 12 GS + G L+ L + + CH L +PLL + +K A R VE+ E Sbjct: 522 GSQKQSGDNLNDTLRKAKEVLQCHESLQNPLL-STSKSTRNYAKASRNVEESE 573
>STO1_CAEEL (Q19200) Stomatin-1| Length = 330 Score = 28.9 bits (63), Expect = 6.6 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +1 Query: 250 LFCDAMVWAVTFLTFPVRLLAAADRERKLDRLVVEMQGQM 369 +FC AM + + FLTFPV + ++ R VV G++ Sbjct: 42 MFCIAMSYVLIFLTFPVSVFMCIKIVQEYQRAVVFRLGRL 81
>CP135_HUMAN (Q66GS9) Centrosomal protein of 135 kDa (Cep135 protein)| (Centrosomal protein 4) Length = 1140 Score = 28.5 bits (62), Expect = 8.6 Identities = 12/46 (26%), Positives = 28/46 (60%) Frame = +1 Query: 304 LLAAADRERKLDRLVVEMQGQMERVVWENRDLEQRLRVALKEKATM 441 +L+ R + ++L+ + Q++ + N+DLE+R+R ++ K T+ Sbjct: 256 VLSLESRNKTNEKLIAHLNIQVDFLQQANKDLEKRIRELMETKETV 301
>TTC14_MOUSE (Q9CSP9) Tetratricopeptide repeat protein 14 (TPR repeat protein| 14) (Fragment) Length = 441 Score = 28.5 bits (62), Expect = 8.6 Identities = 15/39 (38%), Positives = 17/39 (43%) Frame = -1 Query: 226 PQPSAGTHERRTPRRSKEKEACTKEDLSSALLWSGRAPP 110 P P AG E+R +K K DL AL W A P Sbjct: 47 PPPGAGRKEKRVDNIEIQKFISKKADLLFALSWKSDASP 85
>EFG_WOLSU (Q7MA53) Elongation factor G (EF-G)| Length = 693 Score = 28.5 bits (62), Expect = 8.6 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = -3 Query: 191 AATEQGEGSMHK--GGSQLSSALVRPGATILCHSPLLSPLL 75 AA EQ E M K G +L++ ++ G I CH+ + P+L Sbjct: 218 AAAEQDEALMEKYLNGEELTTEEIKRGLKIGCHAMAIIPML 258 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,980,450 Number of Sequences: 219361 Number of extensions: 935231 Number of successful extensions: 3656 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3565 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3654 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
