ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast65e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK109813.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
2ref|NM_189366.1| Oryza sativa (japonica cultivar-group), predic... 80 7e-12
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
4dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
5emb|AL139138.17| Human DNA sequence from clone RP5-1034F7 on chr... 44 0.40
6gb|AC102616.7| Mus musculus chromosome 18, clone RP23-425L21, co... 42 1.6
7ref|XM_493821.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
8gb|AY492261.1| Corynebacterium mucifaciens strain CIP 105129 Rpo... 42 1.6
9gb|AC102271.6| Mus musculus chromosome 7, clone RP24-281C4, comp... 42 1.6
10gb|AC008341.3| Drosophila melanogaster clone BACR15P11, complete... 42 1.6
11gb|AC157901.4| Mus musculus chromosome 18, clone RP23-189P21, co... 42 1.6
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.6
13emb|AL445587.10| Human DNA sequence from clone RP11-429D3 on chr... 42 1.6
14gb|CP000088.1| Thermobifida fusca YX, complete genome 42 1.6
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
16dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.6
17dbj|AK070255.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
18gb|AE003833.4| Drosophila melanogaster chromosome 2R, section 17... 42 1.6
19gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.6
20dbj|D13386.1|TTHHSAMINO Thermus thermophilus gene for heat stabl... 42 1.6
21dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, ... 40 6.2
23gb|DQ226544.1| Suid herpesvirus 1 strain RongA UL24 protein (UL2... 40 6.2
24ref|XM_468599.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
25gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 6.2
26gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genom... 40 6.2
27gb|AY492286.1| Rhodococcus equi strain CIP 54.72 RpoB (rpoB) gen... 40 6.2
28gb|AY492285.1| Rhodococcus equi strain CIP 81.17 RpoB (rpoB) gen... 40 6.2
29gb|AC016814.14| Mus musculus chromosome 1, clone RP23-2M16, comp... 40 6.2
30gb|AC160550.6| Mus musculus chromosome 15, clone RP23-284G10, co... 40 6.2
31ref|XM_983294.1| PREDICTED: Mus musculus similar to heparan sulf... 40 6.2
32ref|XM_893564.2| PREDICTED: Mus musculus similar to heparan sulf... 40 6.2
33gb|AC124012.4| Mus musculus BAC clone RP24-357P22 from chromosom... 40 6.2
34ref|XM_838547.1| Leishmania major strain Friedlin hypothetical p... 40 6.2
35ref|XM_741914.1| Aspergillus fumigatus Af293 C6 transcription fa... 40 6.2
36emb|BX323046.3| Human DNA sequence from clone RP11-11N7 on chrom... 40 6.2
37ref|XM_777334.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.2
38emb|AL079336.27|HSJ662M14 Human DNA sequence from clone RP4-662M... 40 6.2
39emb|X79983.1|PRVIRDNA Pseudorabies Virus DNA 40 6.2
40dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.2
41gb|AC151718.5| Mus musculus BAC clone RP23-142J2 from chromosome... 40 6.2
42gb|AC135559.4| Oryza sativa chromosome 3 BAC OSJNBa0030J19 genom... 40 6.2
43tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome 40 6.2
44gb|AC008186.5|AC008186 Drosophila melanogaster, chromosome 2R, r... 40 6.2
45gb|AY082334.1| Gallus gallus chondrogenesis associated lipocalin... 40 6.2
46gb|AC132006.2| Homo sapiens 3 BAC RP11-100F22 (Roswell Park Canc... 40 6.2
47emb|AJ580452.1|BNA580452 Brassica napus aap6 gene for amino acid... 40 6.2
48gb|AE003834.3| Drosophila melanogaster chromosome 2R, section 16... 40 6.2
49emb|X55001.1|PVTHYK Pseudorabies virus gene for thymidine kinase... 40 6.2
50emb|X95710.1|MMULGENES Pseudorabies virus UL23, UL24, UL25, UL26... 40 6.2 
>dbj|AK109813.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-H03, full
           insert sequence
          Length = 1417

 Score =  145 bits (73), Expect = 1e-31
 Identities = 172/205 (83%)
 Strand = Plus / Plus

                                                                       
Query: 226 gccgccgtcagcctcccgatgctcctcttctgcgacgccatggtgtgggccgtcaccttc 285
           ||||||||||  ||||||  ||| |||| ||||||||||||| | |   ||||| |||||
Sbjct: 201 gccgccgtcaagctcccggcgctgctctgctgcgacgccatgctctccaccgtcgccttc 260

                                                                       
Query: 286 ctcaccttccccgtgcgcctcctcgccgccgccgacagggagcgcaagttggaccggctg 345
           |||||||||||  | |||||||||||||||| |||||| ||||||||| |||| ||||||
Sbjct: 261 ctcaccttcccgctccgcctcctcgccgccgtcgacagagagcgcaagctggatcggctg 320

                                                                       
Query: 346 gtggtggaaatgcaggggcagatggagcgggtggtctgggagaacagggacctggagcag 405
           |||| ||| |||||| ||||||||||| || |||| |||||||||||||| |||||| ||
Sbjct: 321 gtgggggagatgcagaggcagatggagaggttggtgtgggagaacagggagctggaggag 380

                                    
Query: 406 aggttgagggtggcgctcaaggaga 430
           |   || |  |||||||||||||||
Sbjct: 381 aaactgggcatggcgctcaaggaga 405
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>ref|NM_189366.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 993

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 91/108 (84%)
 Strand = Plus / Plus

                                                                       
Query: 226 gccgccgtcagcctcccgatgctcctcttctgcgacgccatggtgtgggccgtcaccttc 285
           ||||||||||  ||||||  ||| |||| ||||||||||||| | |   ||||| |||||
Sbjct: 61  gccgccgtcaagctcccggcgctgctctgctgcgacgccatgctctccaccgtcgccttc 120

                                                           
Query: 286 ctcaccttccccgtgcgcctcctcgccgccgccgacagggagcgcaag 333
           |||||||||||  | |||||||||||||||| |||||| |||||||||
Sbjct: 121 ctcaccttcccgctccgcctcctcgccgccgtcgacagagagcgcaag 168



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                       
Query: 335 tggaccggctggtggtggaaatgcaggggcagatggagcgggtggtctgggagaacaggg 394
           |||| |||||||||| ||| |||||| ||||||||||| || |||| |||||||||||||
Sbjct: 185 tggatcggctggtgggggagatgcagaggcagatggagaggttggtgtgggagaacaggg 244

                                               
Query: 395 acctggagcagaggttgagggtggcgctcaaggaga 430
           | |||||| |||   || |  |||||||||||||||
Sbjct: 245 agctggaggagaaactgggcatggcgctcaaggaga 280
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 91/108 (84%)
 Strand = Plus / Plus

                                                                            
Query: 226      gccgccgtcagcctcccgatgctcctcttctgcgacgccatggtgtgggccgtcaccttc 285
                ||||||||||  ||||||  ||| |||| ||||||||||||| | |   ||||| |||||
Sbjct: 42404357 gccgccgtcaagctcccggcgctgctctgctgcgacgccatgctctccaccgtcgccttc 42404416

                                                                
Query: 286      ctcaccttccccgtgcgcctcctcgccgccgccgacagggagcgcaag 333
                |||||||||||  | |||||||||||||||| |||||| |||||||||
Sbjct: 42404417 ctcaccttcccgctccgcctcctcgccgccgtcgacagagagcgcaag 42404464



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                            
Query: 335      tggaccggctggtggtggaaatgcaggggcagatggagcgggtggtctgggagaacaggg 394
                |||| |||||||||| ||| |||||| ||||||||||| || |||| |||||||||||||
Sbjct: 42404545 tggatcggctggtgggggagatgcagaggcagatggagaggttggtgtgggagaacaggg 42404604

                                                    
Query: 395      acctggagcagaggttgagggtggcgctcaaggaga 430
                | |||||| |||   || |  |||||||||||||||
Sbjct: 42404605 agctggaggagaaactgggcatggcgctcaaggaga 42404640
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>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0483G10
          Length = 190721

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 91/108 (84%)
 Strand = Plus / Plus

                                                                         
Query: 226   gccgccgtcagcctcccgatgctcctcttctgcgacgccatggtgtgggccgtcaccttc 285
             ||||||||||  ||||||  ||| |||| ||||||||||||| | |   ||||| |||||
Sbjct: 63695 gccgccgtcaagctcccggcgctgctctgctgcgacgccatgctctccaccgtcgccttc 63754

                                                             
Query: 286   ctcaccttccccgtgcgcctcctcgccgccgccgacagggagcgcaag 333
             |||||||||||  | |||||||||||||||| |||||| |||||||||
Sbjct: 63755 ctcaccttcccgctccgcctcctcgccgccgtcgacagagagcgcaag 63802



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                         
Query: 335   tggaccggctggtggtggaaatgcaggggcagatggagcgggtggtctgggagaacaggg 394
             |||| |||||||||| ||| |||||| ||||||||||| || |||| |||||||||||||
Sbjct: 63883 tggatcggctggtgggggagatgcagaggcagatggagaggttggtgtgggagaacaggg 63942

                                                 
Query: 395   acctggagcagaggttgagggtggcgctcaaggaga 430
             | |||||| |||   || |  |||||||||||||||
Sbjct: 63943 agctggaggagaaactgggcatggcgctcaaggaga 63978
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>emb|AL139138.17| Human DNA sequence from clone RP5-1034F7 on chromosome 1p33-34.3
             Contains a novel gene, the EBNA1BP2 gene for EBNA1 binding
             protein 2 and the 5' end of gene FLJ32000, complete
             sequence
          Length = 77017

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 382   tgggagaacagggacctggagc 403
             ||||||||||||||||||||||
Sbjct: 11999 tgggagaacagggacctggagc 12020
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>gb|AC102616.7| Mus musculus chromosome 18, clone RP23-425L21, complete sequence
          Length = 192276

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     cccatcatccctctccttgct 22
             |||||||||||||||||||||
Sbjct: 32231 cccatcatccctctccttgct 32211
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>ref|XM_493821.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 972

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 299 tgcgcctcctcgccgccgccg 319
           |||||||||||||||||||||
Sbjct: 79  tgcgcctcctcgccgccgccg 59
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>gb|AY492261.1| Corynebacterium mucifaciens strain CIP 105129 RpoB (rpoB) gene,
           partial cds
          Length = 3330

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 440 tggaggacatcctcgacgaga 460
           |||||||||||||||||||||
Sbjct: 199 tggaggacatcctcgacgaga 219
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>gb|AC102271.6| Mus musculus chromosome 7, clone RP24-281C4, complete sequence
          Length = 184607

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      cccatcatccctctccttgct 22
              |||||||||||||||||||||
Sbjct: 102941 cccatcatccctctccttgct 102961
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>gb|AC008341.3| Drosophila melanogaster clone BACR15P11, complete sequence
          Length = 171235

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    cagagcagagctgagctgaga 149
              |||||||||||||||||||||
Sbjct: 126858 cagagcagagctgagctgaga 126838
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>gb|AC157901.4| Mus musculus chromosome 18, clone RP23-189P21, complete sequence
          Length = 191242

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     cccatcatccctctccttgct 22
             |||||||||||||||||||||
Sbjct: 75471 cccatcatccctctccttgct 75491
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 299     tgcgcctcctcgccgccgccg 319
               |||||||||||||||||||||
Sbjct: 1696330 tgcgcctcctcgccgccgccg 1696310



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 300      gcgcctcctcgccgccgccg 319
                ||||||||||||||||||||
Sbjct: 16529962 gcgcctcctcgccgccgccg 16529981
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>emb|AL445587.10| Human DNA sequence from clone RP11-429D3 on chromosome 9 Contains part
             of a novel gene (LOC158135) and a CpG island, complete
             sequence
          Length = 173062

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 133   gcagagctgagctgagatcct 153
             |||||||||||||||||||||
Sbjct: 38023 gcagagctgagctgagatcct 38003
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 361     gggcagatggagcgggtggtc 381
               |||||||||||||||||||||
Sbjct: 2089386 gggcagatggagcgggtggtc 2089366
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 299     tgcgcctcctcgccgccgccg 319
               |||||||||||||||||||||
Sbjct: 1696328 tgcgcctcctcgccgccgccg 1696308



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 300      gcgcctcctcgccgccgccg 319
                ||||||||||||||||||||
Sbjct: 16523596 gcgcctcctcgccgccgccg 16523615
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 282     cttcctcaccttccccgtgcg 302
               |||||||||||||||||||||
Sbjct: 1096782 cttcctcaccttccccgtgcg 1096802
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>dbj|AK070255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043P14, full
           insert sequence
          Length = 1193

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 299 tgcgcctcctcgccgccgccg 319
           |||||||||||||||||||||
Sbjct: 154 tgcgcctcctcgccgccgccg 134
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>gb|AE003833.4| Drosophila melanogaster chromosome 2R, section 17 of 73 of the complete
             sequence
          Length = 297107

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 129   cagagcagagctgagctgaga 149
             |||||||||||||||||||||
Sbjct: 70527 cagagcagagctgagctgaga 70507
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 282    cttcctcaccttccccgtgcg 302
              |||||||||||||||||||||
Sbjct: 769762 cttcctcaccttccccgtgcg 769782
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>dbj|D13386.1|TTHHSAMINO Thermus thermophilus gene for heat stable aminopeptidase, complete
           cds
          Length = 2057

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 282 cttcctcaccttccccgtgcg 302
           |||||||||||||||||||||
Sbjct: 123 cttcctcaccttccccgtgcg 143
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>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              clone:P0043E01
          Length = 154128

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 299    tgcgcctcctcgccgccgccg 319
              |||||||||||||||||||||
Sbjct: 108793 tgcgcctcctcgccgccgccg 108773
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>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence
          Length = 491611

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    ggaccggctggtggtggaaa 355
              ||||||||||||||||||||
Sbjct: 132184 ggaccggctggtggtggaaa 132203
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>gb|DQ226544.1| Suid herpesvirus 1 strain RongA UL24 protein (UL24) gene, complete
           cds
          Length = 516

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 gcgcctcctcgccgccgccg 319
           ||||||||||||||||||||
Sbjct: 321 gcgcctcctcgccgccgccg 340
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>ref|XM_468599.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 513

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 gcgcctcctcgccgccgccg 319
           ||||||||||||||||||||
Sbjct: 347 gcgcctcctcgccgccgccg 366
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 9       tccctctccttgctccacgacacggccg 36
               ||||||| | ||||||||||||||||||
Sbjct: 2071303 tccctctgcctgctccacgacacggccg 2071276
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>gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genomic sequence, complete
             sequence
          Length = 145714

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   gcgcctcctcgccgccgccg 319
             ||||||||||||||||||||
Sbjct: 54370 gcgcctcctcgccgccgccg 54351
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>gb|AY492286.1| Rhodococcus equi strain CIP 54.72 RpoB (rpoB) gene, partial cds
          Length = 3320

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 gctccgtcgcggcgtgcggc 198
           ||||||||||||||||||||
Sbjct: 185 gctccgtcgcggcgtgcggc 166
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>gb|AY492285.1| Rhodococcus equi strain CIP 81.17 RpoB (rpoB) gene, partial cds
          Length = 3357

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 gctccgtcgcggcgtgcggc 198
           ||||||||||||||||||||
Sbjct: 178 gctccgtcgcggcgtgcggc 159
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>gb|AC016814.14| Mus musculus chromosome 1, clone RP23-2M16, complete sequence
          Length = 247961

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   cagagcagagctgagctgag 148
             ||||||||||||||||||||
Sbjct: 96482 cagagcagagctgagctgag 96501
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>gb|AC160550.6| Mus musculus chromosome 15, clone RP23-284G10, complete sequence
          Length = 232182

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   tgcatgcttccttctccttg 179
             ||||||||||||||||||||
Sbjct: 65453 tgcatgcttccttctccttg 65434
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>ref|XM_983294.1| PREDICTED: Mus musculus similar to heparan sulfate D-glucosaminyl
           3-O-sulfotransferase 4 (LOC670791), mRNA
          Length = 1824

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 gcgcctcctcgccgccgccg 319
           ||||||||||||||||||||
Sbjct: 752 gcgcctcctcgccgccgccg 771
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>ref|XM_893564.2| PREDICTED: Mus musculus similar to heparan sulfate D-glucosaminyl
            3-O-sulfotransferase 4 (LOC628779), mRNA
          Length = 2241

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  gcgcctcctcgccgccgccg 319
            ||||||||||||||||||||
Sbjct: 1169 gcgcctcctcgccgccgccg 1188
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>gb|AC124012.4| Mus musculus BAC clone RP24-357P22 from chromosome 18, complete sequence
          Length = 193064

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    tgaccagagcagagctgagc 144
              ||||||||||||||||||||
Sbjct: 105365 tgaccagagcagagctgagc 105346
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>ref|XM_838547.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1467)
            partial mRNA
          Length = 19875

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 9    tccctctccttgctccacgacacggccg 36
            ||||||| | ||||||||||||||||||
Sbjct: 2367 tccctctgcctgctccacgacacggccg 2340
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>ref|XM_741914.1| Aspergillus fumigatus Af293 C6 transcription factor (Afu8g01990)
            partial mRNA
          Length = 2418

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 121  ggcctgaccagagcagagct 140
            ||||||||||||||||||||
Sbjct: 2123 ggcctgaccagagcagagct 2142
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>emb|BX323046.3| Human DNA sequence from clone RP11-11N7 on chromosome 1 Contains the
             FAM36A gene for member A of family with sequence
             similarity 36, the gene for a novel protein (FLJ37978,
             FLJ30202), the HNRPU gene for heterogeneous nuclear
             ribonucleoprotein U (scaffold attachment factor A) and
             three CpG islands, complete sequence
          Length = 124570

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   tcaccttcctcaccttcccc 297
             ||||||||||||||||||||
Sbjct: 18320 tcaccttcctcaccttcccc 18339
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>ref|XM_777334.1| PREDICTED: Strongylocentrotus purpuratus similar to amino
            acid/polyamine transporter, family II (53.3 kD) (4G107)
            (LOC577082), mRNA
          Length = 1305

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  ccgtcaccttcctcaccttc 294
            ||||||||||||||||||||
Sbjct: 1049 ccgtcaccttcctcaccttc 1068
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>emb|AL079336.27|HSJ662M14 Human DNA sequence from clone RP4-662M14 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 117077

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   ccttcctcaccttccccgtg 300
             ||||||||||||||||||||
Sbjct: 60017 ccttcctcaccttccccgtg 60036
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>emb|X79983.1|PRVIRDNA Pseudorabies Virus DNA
          Length = 4093

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 gcgcctcctcgccgccgccg 319
           ||||||||||||||||||||
Sbjct: 296 gcgcctcctcgccgccgccg 315
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 335     tggaccggctggtggtggaa 354
               ||||||||||||||||||||
Sbjct: 4863188 tggaccggctggtggtggaa 4863169
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>gb|AC151718.5| Mus musculus BAC clone RP23-142J2 from chromosome 7, complete sequence
          Length = 213292

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 300    gcgcctcctcgccgccgccg 319
              ||||||||||||||||||||
Sbjct: 184388 gcgcctcctcgccgccgccg 184369
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>gb|AC135559.4| Oryza sativa chromosome 3 BAC OSJNBa0030J19 genomic sequence, complete
              sequence
          Length = 133843

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 300    gcgcctcctcgccgccgccg 319
              ||||||||||||||||||||
Sbjct: 124081 gcgcctcctcgccgccgccg 124062
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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   gcgcctcctcgccgccgccg 319
             ||||||||||||||||||||
Sbjct: 59199 gcgcctcctcgccgccgccg 59180
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>gb|AC008186.5|AC008186 Drosophila melanogaster, chromosome 2R, region 45A-46A, BAC clone
              BACR10M14, complete sequence
          Length = 189757

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 131    gagcagagctgagctgagatcctc 154
              |||| |||||||||||||||||||
Sbjct: 159198 gagctgagctgagctgagatcctc 159221
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>gb|AY082334.1| Gallus gallus chondrogenesis associated lipocalin gene, complete
           cds
          Length = 2520

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 129 cagagcagagctgagctgag 148
           ||||||||||||||||||||
Sbjct: 513 cagagcagagctgagctgag 494
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>gb|AC132006.2| Homo sapiens 3 BAC RP11-100F22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 87507

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 118   cccggcctgaccagagcagagctg 141
             |||||||| |||||||||||||||
Sbjct: 20375 cccggcctcaccagagcagagctg 20398
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>emb|AJ580452.1|BNA580452 Brassica napus aap6 gene for amino acid permease, promoter region
          Length = 2374

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  gagtggcgacagtagtggag 97
           ||||||||||||||||||||
Sbjct: 127 gagtggcgacagtagtggag 146
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>gb|AE003834.3| Drosophila melanogaster chromosome 2R, section 16 of 73 of the complete
              sequence
          Length = 243313

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 131    gagcagagctgagctgagatcctc 154
              |||| |||||||||||||||||||
Sbjct: 166040 gagctgagctgagctgagatcctc 166063
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>emb|X55001.1|PVTHYK Pseudorabies virus gene for thymidine kinase, and mutant gene for
           deficient thymidine kinase
          Length = 1492

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 300 gcgcctcctcgccgccgccg 319
           ||||||||||||||||||||
Sbjct: 75  gcgcctcctcgccgccgccg 56
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>emb|X95710.1|MMULGENES Pseudorabies virus UL23, UL24, UL25, UL26, UL26.5, and UL44-gC genes
          Length = 4523

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gcgcctcctcgccgccgccg 319
            ||||||||||||||||||||
Sbjct: 3796 gcgcctcctcgccgccgccg 3777


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,765,343
Number of Sequences: 3902068
Number of extensions: 4765343
Number of successful extensions: 105377
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104505
Number of HSP's gapped (non-prelim): 868
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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