ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast65d07 |
|---|---|
| Clone Library Name | barley_pub |
>YQJG_ECOLI (P42620) Hypothetical protein yqjG| Length = 328 Score = 67.4 bits (163), Expect = 2e-11 Identities = 43/98 (43%), Positives = 53/98 (54%), Gaps = 7/98 (7%) Frame = +1 Query: 145 DEVTDTGAFDRTPSTFRSFVSSDGA------ARFPAVAGRYHLYVSYACPWASRCLAYLK 306 D + G F R+ S FR+++++DGA F A RYHLYVS ACPWA R L K Sbjct: 15 DTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRK 74 Query: 307 LKGLDHAISFSSVKPI-FERTRESDDHLGWVFPAAAGE 417 LKGL+ IS S V P+ E DD FP A G+ Sbjct: 75 LKGLEPFISVSVVNPLMLENGWTFDDS----FPGATGD 108
>ECM4_YEAST (P36156) Extracellular matrix protein 4| Length = 370 Score = 51.6 bits (122), Expect = 1e-06 Identities = 31/61 (50%), Positives = 33/61 (54%) Frame = +1 Query: 163 GAFDRTPSTFRSFVSSDGAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAISFSS 342 GAF R S+FR +S PA GRY LYVS ACPWA R L LKGL I S Sbjct: 11 GAFKRQVSSFRETISKQHPIYKPA-KGRYWLYVSLACPWAHRTLITRALKGLTSVIGCSV 69 Query: 343 V 345 V Sbjct: 70 V 70
>YM85_YEAST (Q04806) Hypothetical 42.4 kDa protein in FAA4-HOR7 intergenic| region Length = 366 Score = 46.2 bits (108), Expect = 4e-05 Identities = 27/57 (47%), Positives = 30/57 (52%) Frame = +1 Query: 169 FDRTPSTFRSFVSSDGAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAISFS 339 F R S FR +S+D PA GRY LYV+ CPWA R L LKGL I S Sbjct: 13 FKRQSSPFREIISADHPIYKPA-KGRYWLYVALPCPWAQRTLITRALKGLAPIIGCS 68
>YK67_CAEEL (P34345) Hypothetical protein C29E4.7 in chromosome III| Length = 250 Score = 32.7 bits (73), Expect = 0.46 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 214 GAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLD 321 G A P G + +Y CPWA R + Y+ KG++ Sbjct: 14 GDAEPPLSKGSFRVYNMRFCPWAERAMLYVAAKGIE 49
>GSTO1_RAT (Q9Z339) Glutathione transferase omega-1 (EC 2.5.1.18) (GSTO 1-1)| (Glutathione-dependent dehydroascorbate reductase) Length = 241 Score = 30.8 bits (68), Expect = 1.8 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +1 Query: 229 PAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAI 330 P G+ +Y CP+A R L LK KG+ H I Sbjct: 18 PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEI 51
>GSTO1_MOUSE (O09131) Glutathione transferase omega-1 (EC 2.5.1.18) (GSTO 1-1)| (p28) Length = 240 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +1 Query: 229 PAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAI 330 P G+ +Y CP+A R L LK KG+ H + Sbjct: 18 PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEV 51
>KPCD1_MOUSE (Q62101) Serine/threonine-protein kinase D1 (EC 2.7.11.13)| (nPKC-D1) (Protein kinase D) (Protein kinase C mu type) (nPKC-mu) Length = 918 Score = 30.0 bits (66), Expect = 3.0 Identities = 14/23 (60%), Positives = 16/23 (69%) Frame = +1 Query: 394 VFPAAAGEVPGADPDPFTAPGAS 462 V AAA VPG+ P PF APGA+ Sbjct: 20 VAAAAAALVPGSGPAPFPAPGAA 42
>IN21_MAIZE (P49248) IN2-1 protein| Length = 243 Score = 29.6 bits (65), Expect = 3.9 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = +1 Query: 229 PAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAISFSSV 345 P G LY+ Y CP+A R LKGL + ++ Sbjct: 27 PVFDGTTRLYICYFCPFAQRAWVTRNLKGLQDKMELVAI 65
>KLF1_HUMAN (Q13351) Krueppel-like factor 1 (Erythroid krueppel-like| transcription factor) (EKLF) (Erythroid transcription factor) Length = 362 Score = 29.3 bits (64), Expect = 5.1 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +1 Query: 373 SDDHLGWVFPAAAGEVPGADPDPFTAP 453 S+DH GWV PA P A P AP Sbjct: 129 SEDHSGWVRPALRARAPDAFVGPALAP 155
>GLRX2_SYNY3 (P73492) Probable glutaredoxin ssr2061| Length = 88 Score = 28.9 bits (63), Expect = 6.7 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +1 Query: 232 AVAGRYHLYVSYACPWASRCLAYLKLKGLD 321 AV+ + +Y CP+ R LA LK KG++ Sbjct: 2 AVSAKIEIYTWSTCPFCMRALALLKRKGVE 31
>MYH11_CHICK (P10587) Myosin-11 (Myosin heavy chain, gizzard smooth muscle)| Length = 1978 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +1 Query: 289 CLAYLKLKGLDHAISFSSVKPIFERTRESDD 381 C AYLKL+ F+ VKP+ + TR+ ++ Sbjct: 828 CAAYLKLRNWQWWRLFTKVKPLLQVTRQEEE 858
>MYH11_RABIT (P35748) Myosin-11 (Myosin heavy chain, smooth muscle isoform)| (SMMHC) Length = 1972 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +1 Query: 289 CLAYLKLKGLDHAISFSSVKPIFERTRESDD 381 C AYLKL+ F+ VKP+ + TR+ ++ Sbjct: 823 CAAYLKLRNWQWWRLFTKVKPLLQVTRQEEE 853
>MYH11_MOUSE (O08638) Myosin-11 (Myosin heavy chain, smooth muscle isoform)| (SMMHC) Length = 1972 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +1 Query: 289 CLAYLKLKGLDHAISFSSVKPIFERTRESDD 381 C AYLKL+ F+ VKP+ + TR+ ++ Sbjct: 823 CAAYLKLRNWQWWRLFTKVKPLLQVTRQEEE 853
>MYH11_HUMAN (P35749) Myosin-11 (Myosin heavy chain, smooth muscle isoform)| (SMMHC) Length = 1972 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +1 Query: 289 CLAYLKLKGLDHAISFSSVKPIFERTRESDD 381 C AYLKL+ F+ VKP+ + TR+ ++ Sbjct: 823 CAAYLKLRNWQWWRLFTKVKPLLQVTRQEEE 853 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,922,122 Number of Sequences: 219361 Number of extensions: 481769 Number of successful extensions: 2228 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2097 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2227 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
