ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast65c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YFK5_SCHPO (P87132) Hypothetical protein C167.05 in chromosome I 31 1.9
2HXA5_MOUSE (P09021) Homeobox protein Hox-A5 (Hox-1.3) (M2) 29 5.6
3MLOH1_ORYSA (O49914) MLO protein homolog 1 29 7.3

>YFK5_SCHPO (P87132) Hypothetical protein C167.05 in chromosome I|
          Length = 601

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 11  VDLSDESAFAVRWAVQNYLRPGDAVVLLHV 100
           +DLS ES  A  WAV   LR GD ++++ V
Sbjct: 437 LDLSSESLHAAEWAVGILLRNGDTLIIVDV 466



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>HXA5_MOUSE (P09021) Homeobox protein Hox-A5 (Hox-1.3) (M2)|
          Length = 270

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 481 TQ*CTSNHYTPEPPLPALARGPKSAASHDHGGQ 383
           +Q  TS H  P  PLP  A  P   +   HGG+
Sbjct: 87  SQPATSTHSPPPDPLPCSAVAPSPGSDSHHGGK 119



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>MLOH1_ORYSA (O49914) MLO protein homolog 1|
          Length = 540

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 224 LQKKREEDFDAFTSTKSQDLAQPLVAAQIPFKIHVVKDH 340
           ++KK+  D DAF +  S D A P  +++    +H+++DH
Sbjct: 440 MEKKKVRDADAFLAQMSVDFATP-ASSRSASPVHLLQDH 477


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,816,914
Number of Sequences: 219361
Number of extensions: 597476
Number of successful extensions: 2733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2732
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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