ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast65c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_527093.1| PREDICTED: Pan troglodytes similar to gemin 5 (... 40 2.3
2ref|NM_015465.1| Homo sapiens gem (nuclear organelle) associated... 40 2.3
3ref|XM_846533.1| PREDICTED: Canis familiaris similar to interleu... 40 2.3
4gb|BC014147.2| Homo sapiens gem (nuclear organelle) associated p... 40 2.3
5gb|BC008776.2| Homo sapiens gem (nuclear organelle) associated p... 40 2.3
6emb|AL117665.1|HSM801203 Homo sapiens mRNA; cDNA DKFZp586M1824 (... 40 2.3
7gb|AC008421.6| Homo sapiens chromosome 5 clone CTC-298E16, compl... 40 2.3
8gb|AY063750.1| Homo sapiens WD repeat protein Gemin5 mRNA, compl... 40 2.3
9dbj|AK074066.1| Homo sapiens mRNA for FLJ00137 protein 40 2.3
10gb|AC006267.1| Arabidopsis thaliana BAC F9M13 from chromosome IV... 38 8.9
11gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 38 8.9
12gb|DQ149987.1| Streptomyces neyagawaensis concanamycin A biosynt... 38 8.9
13ref|NM_025411.2| Mus musculus RIKEN cDNA 1110049F12 gene (111004... 38 8.9
14gb|AC127348.4| Mus musculus BAC clone RP23-57D10 from chromosome... 38 8.9
15ref|XM_987910.1| PREDICTED: Mus musculus RIKEN cDNA 1110049F12 g... 38 8.9
16gb|DQ483205.1| Gymnogyps californianus clone 97A microsatellite ... 38 8.9
17gb|BC052695.1| Mus musculus RIKEN cDNA 1110049F12 gene, mRNA (cD... 38 8.9
18gb|AY952143.1| Streptomyces hygroscopicus strain NRRL 3602 AHBA ... 38 8.9
19emb|BX294139.1| Pirellula sp. strain 1 complete genome; segment ... 38 8.9
20emb|AL161510.2|ATCHRIV22 Arabidopsis thaliana DNA chromosome 4, ... 38 8.9
21emb|AJ418061.1|XFL418061 Xanthobacter flavus chnC gene, chnB gen... 38 8.9
22emb|BX546489.13| Zebrafish DNA sequence from clone CH211-258F14 ... 38 8.9
23dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 38 8.9
24dbj|AK135035.1| Mus musculus adult male olfactory brain cDNA, RI... 38 8.9
25gb|AF360362.1| Pseudomonas putida S12 isolate KL55D8 TrpR (trpR)... 38 8.9
26dbj|AK013877.1| Mus musculus 12 days embryo head cDNA, RIKEN ful... 38 8.9
27dbj|AK051300.1| Mus musculus 12 days embryo spinal ganglion cDNA... 38 8.9
28dbj|AK050261.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 38 8.9
29dbj|AK004208.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 38 8.9
30dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.9
31dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.9
32gb|AF400670.1| Mus musculus TRP26 (Trp26) mRNA, complete cds 38 8.9
33gb|AC154849.2| Mus musculus BAC clone RP23-35P8 from chromosome ... 38 8.9
34gb|AC078955.25| Homo sapiens 12 BAC RP11-543H12 (Roswell Park Ca... 38 8.9
35dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.9
36dbj|AK109271.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.9
37gb|AC116691.12| Mus musculus chromosome 1, clone RP24-312I13, co... 38 8.9
38gb|AE015451.1| Pseudomonas putida KT2440 complete genome 38 8.9
39gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 38 8.9
40gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 8.9
41emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa... 38 8.9
42emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb... 38 8.9
43gb|AC149611.6| Mus musculus BAC clone RP23-157P4 from 7, complet... 38 8.9
44emb|AL672076.10| Mouse DNA sequence from clone RP23-161N17 on ch... 38 8.9 
>ref|XM_527093.1| PREDICTED: Pan troglodytes similar to gemin 5 (LOC471715), mRNA
          Length = 4689

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   gctcccgtgcttgctcctcc 43
            ||||||||||||||||||||
Sbjct: 2455 gctcccgtgcttgctcctcc 2436
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>ref|NM_015465.1| Homo sapiens gem (nuclear organelle) associated protein 5 (GEMIN5),
            mRNA
          Length = 4527

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   gctcccgtgcttgctcctcc 43
            ||||||||||||||||||||
Sbjct: 2365 gctcccgtgcttgctcctcc 2346
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>ref|XM_846533.1| PREDICTED: Canis familiaris similar to interleukin 3 receptor,
           alpha precursor (LOC609293), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 11  ccatggcgccgccgctcccg 30
           ||||||||||||||||||||
Sbjct: 521 ccatggcgccgccgctcccg 502
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>gb|BC014147.2| Homo sapiens gem (nuclear organelle) associated protein 5, mRNA
           (cDNA clone IMAGE:2989451), partial cds
          Length = 3532

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 24  gctcccgtgcttgctcctcc 43
           ||||||||||||||||||||
Sbjct: 606 gctcccgtgcttgctcctcc 587
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>gb|BC008776.2| Homo sapiens gem (nuclear organelle) associated protein 5, mRNA
           (cDNA clone IMAGE:3143002), partial cds
          Length = 3532

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 24  gctcccgtgcttgctcctcc 43
           ||||||||||||||||||||
Sbjct: 606 gctcccgtgcttgctcctcc 587
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>emb|AL117665.1|HSM801203 Homo sapiens mRNA; cDNA DKFZp586M1824 (from clone DKFZp586M1824)
          Length = 4586

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   gctcccgtgcttgctcctcc 43
            ||||||||||||||||||||
Sbjct: 1510 gctcccgtgcttgctcctcc 1491
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>gb|AC008421.6| Homo sapiens chromosome 5 clone CTC-298E16, complete sequence
          Length = 97895

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    gctcccgtgcttgctcctcc 43
             ||||||||||||||||||||
Sbjct: 77014 gctcccgtgcttgctcctcc 76995
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>gb|AY063750.1| Homo sapiens WD repeat protein Gemin5 mRNA, complete cds
          Length = 4527

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   gctcccgtgcttgctcctcc 43
            ||||||||||||||||||||
Sbjct: 2365 gctcccgtgcttgctcctcc 2346
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>dbj|AK074066.1| Homo sapiens mRNA for FLJ00137 protein
          Length = 5376

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   gctcccgtgcttgctcctcc 43
            ||||||||||||||||||||
Sbjct: 2420 gctcccgtgcttgctcctcc 2401
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>gb|AC006267.1| Arabidopsis thaliana BAC F9M13 from chromosome IV near 21.5 cM,
             complete sequence
          Length = 101644

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ttgctcctcctcctgtttg 52
             |||||||||||||||||||
Sbjct: 90244 ttgctcctcctcctgtttg 90226
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 3      gccgatgcccatggcgccg 21
              |||||||||||||||||||
Sbjct: 562255 gccgatgcccatggcgccg 562273
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>gb|DQ149987.1| Streptomyces neyagawaensis concanamycin A biosynthetic gene cluster,
             complete sequence
          Length = 99892

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     ccgatgcccatggcgccgc 22
             |||||||||||||||||||
Sbjct: 15236 ccgatgcccatggcgccgc 15218



 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 4    ccgatgcccatggcgccgc 22
            |||||||||||||||||||
Sbjct: 9561 ccgatgcccatggcgccgc 9543
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>ref|NM_025411.2| Mus musculus RIKEN cDNA 1110049F12 gene (1110049F12Rik), mRNA
          Length = 1533

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   tgcttgctcctcctcctgt 49
            |||||||||||||||||||
Sbjct: 1177 tgcttgctcctcctcctgt 1195
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>gb|AC127348.4| Mus musculus BAC clone RP23-57D10 from chromosome 7, complete sequence
          Length = 229190

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    cttgctcctcctcctgttt 51
             |||||||||||||||||||
Sbjct: 79045 cttgctcctcctcctgttt 79027
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>ref|XM_987910.1| PREDICTED: Mus musculus RIKEN cDNA 1110049F12 gene (1110049F12Rik),
            mRNA
          Length = 1484

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   tgcttgctcctcctcctgt 49
            |||||||||||||||||||
Sbjct: 1200 tgcttgctcctcctcctgt 1218
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>gb|DQ483205.1| Gymnogyps californianus clone 97A microsatellite sequence
          Length = 406

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 33  cttgctcctcctcctgttt 51
           |||||||||||||||||||
Sbjct: 258 cttgctcctcctcctgttt 276
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>gb|BC052695.1| Mus musculus RIKEN cDNA 1110049F12 gene, mRNA (cDNA clone MGC:64617
            IMAGE:5715038), complete cds
          Length = 1454

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   tgcttgctcctcctcctgt 49
            |||||||||||||||||||
Sbjct: 1080 tgcttgctcctcctcctgt 1098
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>gb|AY952143.1| Streptomyces hygroscopicus strain NRRL 3602 AHBA biosynthesis gene
            cluster, partial sequence
          Length = 10801

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 9    gcccatggcgccgccgctc 27
            |||||||||||||||||||
Sbjct: 8709 gcccatggcgccgccgctc 8727
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>emb|BX294139.1| Pirellula sp. strain 1 complete genome; segment 7/24
          Length = 287650

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     gccgatgcccatggcgccg 21
             |||||||||||||||||||
Sbjct: 93535 gccgatgcccatggcgccg 93517
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>emb|AL161510.2|ATCHRIV22 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 22
          Length = 198131

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 34    ttgctcctcctcctgtttg 52
             |||||||||||||||||||
Sbjct: 38795 ttgctcctcctcctgtttg 38813
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>emb|AJ418061.1|XFL418061 Xanthobacter flavus chnC gene, chnB gene and chnA gene (partial)
          Length = 4170

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 2    tgccgatgcccatggcgccgccg 24
            |||| ||||||||||||||||||
Sbjct: 3496 tgcccatgcccatggcgccgccg 3474
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>emb|BX546489.13| Zebrafish DNA sequence from clone CH211-258F14 in linkage group 3,
              complete sequence
          Length = 148304

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 30     gtgcttgctcctcctcctgtttg 52
              |||||| ||||||||||||||||
Sbjct: 131478 gtgctttctcctcctcctgtttg 131500
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 7      atgcccatggcgccgccgc 25
              |||||||||||||||||||
Sbjct: 513709 atgcccatggcgccgccgc 513727
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>dbj|AK135035.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430549J02 product:Warning:
            possibly chimeric clone, full insert sequence
          Length = 1540

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   tgcttgctcctcctcctgt 49
            |||||||||||||||||||
Sbjct: 1039 tgcttgctcctcctcctgt 1057
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>gb|AF360362.1| Pseudomonas putida S12 isolate KL55D8 TrpR (trpR), TrpA (trpA), TrpB
            (trpB), and TrpC (trpC) genes, complete cds
          Length = 5443

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 4    ccgatgcccatggcgccgc 22
            |||||||||||||||||||
Sbjct: 1464 ccgatgcccatggcgccgc 1446
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>dbj|AK013877.1| Mus musculus 12 days embryo head cDNA, RIKEN full-length enriched
           library, clone:3010001I18 product:weakly similar to
           HT014 [Homo sapiens], full insert sequence
          Length = 1196

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 31  tgcttgctcctcctcctgt 49
           |||||||||||||||||||
Sbjct: 840 tgcttgctcctcctcctgt 858
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>dbj|AK051300.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130032B06 product:similar to
            ENDONUCLEASE G LIKE 1 (EC 3.1.30.-) (ENDO G LIKE) [Homo
            sapiens], full insert sequence
          Length = 2573

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 29/31 (93%), Gaps = 1/31 (3%)
 Strand = Plus / Plus

                                           
Query: 36   gctcctcctcctgtttgccgtccctctcctc 66
            ||||||||||||| ||||||| |||||||||
Sbjct: 2381 gctcctcctcctg-ttgccgtgcctctcctc 2410
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>dbj|AK050261.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched
            library, clone:C730031H14 product:AD039 (HYPOTHETICAL
            24.2 KDA PROTEIN) (HT014) homolog [Homo sapiens], full
            insert sequence
          Length = 1303

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   tgcttgctcctcctcctgt 49
            |||||||||||||||||||
Sbjct: 1153 tgcttgctcctcctcctgt 1171
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>dbj|AK004208.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
            enriched library, clone:1110049F12 product:AD039
            (HYPOTHETICAL 24.2 KDA PROTEIN) (HT014) homolog [Homo
            sapiens], full insert sequence
          Length = 1533

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   tgcttgctcctcctcctgt 49
            |||||||||||||||||||
Sbjct: 1177 tgcttgctcctcctcctgt 1195
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 27       cccgtgcttgctcctcctc 45
                |||||||||||||||||||
Sbjct: 25449664 cccgtgcttgctcctcctc 25449682
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 12      catggcgccgccgctcccg 30
               |||||||||||||||||||
Sbjct: 3292175 catggcgccgccgctcccg 3292193
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>gb|AF400670.1| Mus musculus TRP26 (Trp26) mRNA, complete cds
          Length = 1517

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   tgcttgctcctcctcctgt 49
            |||||||||||||||||||
Sbjct: 1143 tgcttgctcctcctcctgt 1161
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>gb|AC154849.2| Mus musculus BAC clone RP23-35P8 from chromosome 13, complete sequence
          Length = 200650

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    gtgcttgctcctcctcctg 48
             |||||||||||||||||||
Sbjct: 85686 gtgcttgctcctcctcctg 85668
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>gb|AC078955.25| Homo sapiens 12 BAC RP11-543H12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 159577

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    cttgctcctcctcctgttt 51
             |||||||||||||||||||
Sbjct: 35612 cttgctcctcctcctgttt 35630
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>dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0015I14
          Length = 150650

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    catggcgccgccgctcccg 30
             |||||||||||||||||||
Sbjct: 79538 catggcgccgccgctcccg 79556
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>dbj|AK109271.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-A07,
          full insert sequence
          Length = 588

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 12 catggcgccgccgctcccg 30
          |||||||||||||||||||
Sbjct: 43 catggcgccgccgctcccg 61
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>gb|AC116691.12| Mus musculus chromosome 1, clone RP24-312I13, complete sequence
          Length = 154587

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    tgcttgctcctcctcctgt 49
             |||||||||||||||||||
Sbjct: 73163 tgcttgctcctcctcctgt 73181
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 4       ccgatgcccatggcgccgc 22
               |||||||||||||||||||
Sbjct: 1452027 ccgatgcccatggcgccgc 1452009
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 5       cgatgcccatggcgccgcc 23
               |||||||||||||||||||
Sbjct: 2206818 cgatgcccatggcgccgcc 2206800
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 27       cccgtgcttgctcctcctc 45
                |||||||||||||||||||
Sbjct: 25377840 cccgtgcttgctcctcctc 25377858
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>emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa0070E09 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144084

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    cccgtgcttgctcctcctc 45
             |||||||||||||||||||
Sbjct: 19046 cccgtgcttgctcctcctc 19064
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>emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 152914

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 27     cccgtgcttgctcctcctc 45
              |||||||||||||||||||
Sbjct: 116472 cccgtgcttgctcctcctc 116490
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>gb|AC149611.6| Mus musculus BAC clone RP23-157P4 from 7, complete sequence
          Length = 217353

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    cttgctcctcctcctgttt 51
             |||||||||||||||||||
Sbjct: 45872 cttgctcctcctcctgttt 45890
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>emb|AL672076.10| Mouse DNA sequence from clone RP23-161N17 on chromosome 4, complete
              sequence
          Length = 208396

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 31     tgcttgctcctcctcctgt 49
              |||||||||||||||||||
Sbjct: 155071 tgcttgctcctcctcctgt 155053


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,267,478
Number of Sequences: 3902068
Number of extensions: 1267478
Number of successful extensions: 73570
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 73162
Number of HSP's gapped (non-prelim): 409
length of query: 182
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 160
effective length of database: 17,147,199,772
effective search space: 2743551963520
effective search space used: 2743551963520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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