>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding|
           protein homolog 2)
          Length = 448

 Score = 89.7 bits (221), Expect = 1e-18
 Identities = 47/68 (69%), Positives = 49/68 (72%)
 Frame = +2

Query: 203 AAPSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRP 382
           AAPSRVGRKQR+QKGPEAAARLPNVAP                   MEEEFVAAQERLRP
Sbjct: 36  AAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLLKLERVKDYLLMEEEFVAAQERLRP 95

Query: 383 TEEKTEED 406
           TE+KTEED
Sbjct: 96  TEDKTEED 103

>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)|
          Length = 439

 Score = 60.8 bits (146), Expect = 7e-10
 Identities = 29/66 (43%), Positives = 39/66 (59%)
 Frame = +2

Query: 209 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 388
           P+RVG+K+RR KGP+AA +LP V P                   ME+EF+  QERL+P +
Sbjct: 29  PTRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQERLKPQD 88

Query: 389 EKTEED 406
           EK EE+
Sbjct: 89  EKNEEE 94

>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4|
          Length = 443

 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 27/66 (40%), Positives = 39/66 (59%)
 Frame = +2

Query: 209 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 388
           PSR+G+K++  KGP+AA++LP V P                   ME+EF+  QERL+P E
Sbjct: 33  PSRIGKKKKGSKGPDAASKLPAVTPHARCRLKLLKSERIKDYLLMEQEFIQNQERLKPQE 92

Query: 389 EKTEED 406
           E+ EE+
Sbjct: 93  ERQEEE 98

>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 57.8 bits (138), Expect = 6e-09
 Identities = 27/66 (40%), Positives = 40/66 (60%)
 Frame = +2

Query: 209 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 388
           P+RVG+K+++ KGP+AA++LP V P                   MEEEF+  QE+++P E
Sbjct: 30  PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE 89

Query: 389 EKTEED 406
           EK EE+
Sbjct: 90  EKQEEE 95

>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 57.8 bits (138), Expect = 6e-09
 Identities = 27/66 (40%), Positives = 40/66 (60%)
 Frame = +2

Query: 209 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 388
           P+RVG+K+++ KGP+AA++LP V P                   MEEEF+  QE+++P E
Sbjct: 30  PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE 89

Query: 389 EKTEED 406
           EK EE+
Sbjct: 90  EKQEEE 95

>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 57.8 bits (138), Expect = 6e-09
 Identities = 27/66 (40%), Positives = 40/66 (60%)
 Frame = +2

Query: 209 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 388
           P+RVG+K+++ KGP+AA++LP V P                   MEEEF+  QE+++P E
Sbjct: 30  PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE 89

Query: 389 EKTEED 406
           EK EE+
Sbjct: 90  EKQEEE 95

>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 26/66 (39%), Positives = 39/66 (59%)
 Frame = +2

Query: 209 PSRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTE 388
           P+RVG+K+++ KGP+AA++ P V P                   MEEEF+  QE+++P E
Sbjct: 30  PTRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE 89

Query: 389 EKTEED 406
           EK EE+
Sbjct: 90  EKQEEE 95

>PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (Protein mts2)|
          Length = 448

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
 Frame = +2

Query: 209 PSRVGRKQRR-QKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPT 385
           P+R GR++++ Q GP+A+A+LP V P                   MEEE+V  QERL+P 
Sbjct: 36  PTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQERLKPQ 95

Query: 386 EEKTEED 406
           +E+T+E+
Sbjct: 96  DERTQEE 102

>PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (TAT-binding|
           homolog 5)
          Length = 437

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 24/65 (36%), Positives = 34/65 (52%)
 Frame = +2

Query: 212 SRVGRKQRRQKGPEAAARLPNVAPXXXXXXXXXXXXXXXXXXXMEEEFVAAQERLRPTEE 391
           S+ GRK+R+  GP  A +LPN+ P                   +EEEFV+  E L+P E+
Sbjct: 29  SKFGRKKRKG-GPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEEEFVSNSEILKPFEK 87

Query: 392 KTEED 406
           K EE+
Sbjct: 88  KQEEE 92

>YMB4_YEAST (P49957) Hypothetical 32.4 kDa protein in TAF40-ERV25 intergenic|
           region
          Length = 279

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 5   WLKPERKEKRSGTRTPPHRIQNRSKPS 85
           W+ P+ K K     TPP +++ R KP+
Sbjct: 168 WVLPKSKSKPKTKSTPPAKVKTRPKPN 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.308    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,440,101
Number of Sequences: 219361
Number of extensions: 193569
Number of successful extensions: 716
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)