ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast65b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 pre... 93 4e-19
2FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 p... 88 9e-18
3FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 pre... 82 6e-16
4RADA_PICTO (Q6L126) DNA repair and recombination protein radA 30 3.8

>FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 precursor|
          Length = 424

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 41/82 (50%), Positives = 60/82 (73%)
 Frame = +3

Query: 195 YNITKILGEYPEYSQFNKLLTQTRLAQDINKRRTITVLVVANSDMGSLAGGGRTLQTIRH 374
           +N+T++L  +P +S F+  LTQT LA +IN+RRTITV  V N+ M +L   G TL T+++
Sbjct: 25  HNVTRLLANHPSFSSFSHFLTQTHLADEINRRRTITVCAVDNAAMSALTSKGYTLSTLKN 84

Query: 375 MLQIHVLVDYYGGKKLHQLAHG 440
           +L +HVL+DY+G KKLHQ+  G
Sbjct: 85  ILSLHVLLDYFGTKKLHQIRDG 106



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>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor|
          Length = 422

 Score = 88.2 bits (217), Expect = 9e-18
 Identities = 46/85 (54%), Positives = 59/85 (69%)
 Frame = +3

Query: 192 GYNITKILGEYPEYSQFNKLLTQTRLAQDINKRRTITVLVVANSDMGSLAGGGRTLQTIR 371
           G+NIT+IL + PEYS FN  L+QT+LA +IN R TITVLV+ N  M SLA G   L  ++
Sbjct: 25  GHNITQILSDTPEYSSFNNYLSQTKLADEINSRTTITVLVLNNGAMSSLA-GKHPLSVVK 83

Query: 372 HMLQIHVLVDYYGGKKLHQLAHGVT 446
           + L + VL+DYY   KLHQL+ G T
Sbjct: 84  NALSLLVLLDYYDPLKLHQLSKGTT 108



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>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor|
           (AtAGP8)
          Length = 420

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 42/84 (50%), Positives = 58/84 (69%)
 Frame = +3

Query: 195 YNITKILGEYPEYSQFNKLLTQTRLAQDINKRRTITVLVVANSDMGSLAGGGRTLQTIRH 374
           +NIT+IL + P+YS FN  L+QT+LA +IN R TITVLV+ N  M +LA G   L  I+ 
Sbjct: 26  HNITQILADSPDYSSFNSYLSQTKLADEINSRTTITVLVLNNGAMSALA-GKHPLSVIKS 84

Query: 375 MLQIHVLVDYYGGKKLHQLAHGVT 446
            L + VL+DYY  +KLH+++ G T
Sbjct: 85  ALSLLVLLDYYDPQKLHKISKGTT 108



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>RADA_PICTO (Q6L126) DNA repair and recombination protein radA|
          Length = 323

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +3

Query: 207 KILGEYPEYSQFNKLLTQTRLAQDINKRRTITVLVVANSDMGSLAGGGRTLQTIRHMLQI 386
           KI+    +Y+      T   +   +NKR+ I  L   +S++ +L GGG   Q+I      
Sbjct: 59  KIINAARKYADVGNFETGEEI---LNKRKEIKKLTTGSSNLDNLLGGGLETQSITEFFG- 114

Query: 387 HVLVDYYGGKK--LHQLAHGVT 446
               ++  GK   +HQLA   T
Sbjct: 115 ----EFGSGKTQIMHQLAVNAT 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,947,316
Number of Sequences: 219361
Number of extensions: 414724
Number of successful extensions: 1397
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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