ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast65b09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13, complete sequence Length = 127952 Score = 200 bits (101), Expect = 2e-48 Identities = 167/189 (88%) Strand = Plus / Minus Query: 95 catgatggatcacctgagcctggtgccctacgagggaggcagcggagccgggggcgacgc 154 |||||||||||||||||||||||||||||||||||| ||||||| | |||||| | | Sbjct: 44677 catgatggatcacctgagcctggtgccctacgagggcggcagcgccggcgggggaggagg 44618 Query: 155 cggggccaagtacaaggagtgcatgcgcaaccacgcggctgccatgggcggccaggcctt 214 || | |||||||||||||||||||| ||||||||||| || |||||||| ||||| || Sbjct: 44617 tggagggaagtacaaggagtgcatgcggaaccacgcggcggcgatgggcgggcaggcgtt 44558 Query: 215 cgacggctgcggggagtacatgccggcctcgccggactcgctcaagtgcgccgcctgcgg 274 |||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 44557 cgacgggtgcggggagtacatgccggcgtcgcccgactcgctcaagtgcgccgcgtgcgg 44498 Query: 275 ctgtcaccg 283 ||| ||||| Sbjct: 44497 ctgccaccg 44489
>emb|AL606626.3|OSJN00050 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088K19, complete sequence Length = 156002 Score = 200 bits (101), Expect = 2e-48 Identities = 167/189 (88%) Strand = Plus / Minus Query: 95 catgatggatcacctgagcctggtgccctacgagggaggcagcggagccgggggcgacgc 154 |||||||||||||||||||||||||||||||||||| ||||||| | |||||| | | Sbjct: 132224 catgatggatcacctgagcctggtgccctacgagggcggcagcgccggcgggggaggagg 132165 Query: 155 cggggccaagtacaaggagtgcatgcgcaaccacgcggctgccatgggcggccaggcctt 214 || | |||||||||||||||||||| ||||||||||| || |||||||| ||||| || Sbjct: 132164 tggagggaagtacaaggagtgcatgcggaaccacgcggcggcgatgggcgggcaggcgtt 132105 Query: 215 cgacggctgcggggagtacatgccggcctcgccggactcgctcaagtgcgccgcctgcgg 274 |||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 132104 cgacgggtgcggggagtacatgccggcgtcgcccgactcgctcaagtgcgccgcgtgcgg 132045 Query: 275 ctgtcaccg 283 ||| ||||| Sbjct: 132044 ctgccaccg 132036
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 200 bits (101), Expect = 2e-48 Identities = 167/189 (88%) Strand = Plus / Minus Query: 95 catgatggatcacctgagcctggtgccctacgagggaggcagcggagccgggggcgacgc 154 |||||||||||||||||||||||||||||||||||| ||||||| | |||||| | | Sbjct: 21610135 catgatggatcacctgagcctggtgccctacgagggcggcagcgccggcgggggaggagg 21610076 Query: 155 cggggccaagtacaaggagtgcatgcgcaaccacgcggctgccatgggcggccaggcctt 214 || | |||||||||||||||||||| ||||||||||| || |||||||| ||||| || Sbjct: 21610075 tggagggaagtacaaggagtgcatgcggaaccacgcggcggcgatgggcgggcaggcgtt 21610016 Query: 215 cgacggctgcggggagtacatgccggcctcgccggactcgctcaagtgcgccgcctgcgg 274 |||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 21610015 cgacgggtgcggggagtacatgccggcgtcgcccgactcgctcaagtgcgccgcgtgcgg 21609956 Query: 275 ctgtcaccg 283 ||| ||||| Sbjct: 21609955 ctgccaccg 21609947
>ref|XM_472571.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 852 Score = 192 bits (97), Expect = 4e-46 Identities = 163/185 (88%) Strand = Plus / Plus Query: 99 atggatcacctgagcctggtgccctacgagggaggcagcggagccgggggcgacgccggg 158 |||||||||||||||||||||||||||||||| ||||||| | |||||| | | || Sbjct: 1 atggatcacctgagcctggtgccctacgagggcggcagcgccggcgggggaggaggtgga 60 Query: 159 gccaagtacaaggagtgcatgcgcaaccacgcggctgccatgggcggccaggccttcgac 218 | |||||||||||||||||||| ||||||||||| || |||||||| ||||| |||||| Sbjct: 61 gggaagtacaaggagtgcatgcggaaccacgcggcggcgatgggcgggcaggcgttcgac 120 Query: 219 ggctgcggggagtacatgccggcctcgccggactcgctcaagtgcgccgcctgcggctgt 278 || |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| Sbjct: 121 gggtgcggggagtacatgccggcgtcgcccgactcgctcaagtgcgccgcgtgcggctgc 180 Query: 279 caccg 283 ||||| Sbjct: 181 caccg 185
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 54.0 bits (27), Expect = 2e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 253 cgctcaagtgcgccgcctgcggctgtcaccg 283 ||||||||||||||||||||||||| ||||| Sbjct: 14739361 cgctcaagtgcgccgcctgcggctgccaccg 14739391 Score = 48.1 bits (24), Expect = 0.015 Identities = 51/60 (85%) Strand = Plus / Minus Query: 183 aaccacgcggctgccatgggcggccaggccttcgacggctgcggggagtacatgccggcc 242 |||||||||| || ||| |||||||| ||| | ||||||||||| |||| |||| ||||| Sbjct: 17650338 aaccacgcggttggcatcggcggccacgccgtggacggctgcggcgagttcatggcggcc 17650279
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0707C02 Length = 163609 Score = 54.0 bits (27), Expect = 2e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 253 cgctcaagtgcgccgcctgcggctgtcaccg 283 ||||||||||||||||||||||||| ||||| Sbjct: 24750 cgctcaagtgcgccgcctgcggctgccaccg 24780
>dbj|AK058840.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-D10, full insert sequence Length = 652 Score = 54.0 bits (27), Expect = 2e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 253 cgctcaagtgcgccgcctgcggctgtcaccg 283 ||||||||||||||||||||||||| ||||| Sbjct: 271 cgctcaagtgcgccgcctgcggctgccaccg 301
>ref|XM_469572.1| Oryza sativa (japonica cultivar-group), mRNA Length = 717 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 164 gtacaaggagtgcatgcgcaaccacgcggc 193 ||||| |||||||||||||||||||||||| Sbjct: 33 gtacagggagtgcatgcgcaaccacgcggc 62
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 164 gtacaaggagtgcatgcgcaaccacgcggc 193 ||||| |||||||||||||||||||||||| Sbjct: 28797113 gtacagggagtgcatgcgcaaccacgcggc 28797142
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 164 gtacaaggagtgcatgcgcaaccacgcggc 193 ||||| |||||||||||||||||||||||| Sbjct: 28888437 gtacagggagtgcatgcgcaaccacgcggc 28888466
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence Length = 147344 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 164 gtacaaggagtgcatgcgcaaccacgcggc 193 ||||| |||||||||||||||||||||||| Sbjct: 104094 gtacagggagtgcatgcgcaaccacgcggc 104123
>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017N18, complete sequence Length = 156643 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 255 ctcaagtgcgccgcctgcggctgtcaccg 283 ||||||||||||||||||||||| ||||| Sbjct: 43560 ctcaagtgcgccgcctgcggctgccaccg 43588 Score = 50.1 bits (25), Expect = 0.004 Identities = 58/69 (84%) Strand = Plus / Plus Query: 171 gagtgcatgcgcaaccacgcggctgccatgggcggccaggccttcgacggctgcggggag 230 |||||| ||||||||||||| || || ||||||||||| | | | ||||| ||| ||||| Sbjct: 43467 gagtgcctgcgcaaccacgccgcggcgatgggcggccacgtcgtggacggatgcagggag 43526 Query: 231 tacatgccg 239 | ||||||| Sbjct: 43527 ttcatgccg 43535
>gb|AC007858.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence Length = 99587 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 255 ctcaagtgcgccgcctgcggctgtcaccg 283 ||||||||||||||||||||||| ||||| Sbjct: 30832 ctcaagtgcgccgcctgcggctgccaccg 30860 Score = 50.1 bits (25), Expect = 0.004 Identities = 58/69 (84%) Strand = Plus / Plus Query: 171 gagtgcatgcgcaaccacgcggctgccatgggcggccaggccttcgacggctgcggggag 230 |||||| ||||||||||||| || || ||||||||||| | | | ||||| ||| ||||| Sbjct: 30739 gagtgcctgcgcaaccacgccgcggcgatgggcggccacgtcgtggacggatgcagggag 30798 Query: 231 tacatgccg 239 | ||||||| Sbjct: 30799 ttcatgccg 30807
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 50.1 bits (25), Expect = 0.004 Identities = 61/73 (83%) Strand = Plus / Plus Query: 164 gtacaaggagtgcatgcgcaaccacgcggctgccatgggcggccaggccttcgacggctg 223 ||||| ||||||| |||||||||||| || ||| |||||||| ||| |||||||||| Sbjct: 1179562 gtacagggagtgccagcgcaaccacgccgccagcatcggcggccacgccgtcgacggctg 1179621 Query: 224 cggggagtacatg 236 | |||||| |||| Sbjct: 1179622 ccgggagttcatg 1179634
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 255 ctcaagtgcgccgcctgcggctgtcaccg 283 ||||||||||||||||||||||| ||||| Sbjct: 28615768 ctcaagtgcgccgcctgcggctgccaccg 28615796 Score = 50.1 bits (25), Expect = 0.004 Identities = 58/69 (84%) Strand = Plus / Plus Query: 171 gagtgcatgcgcaaccacgcggctgccatgggcggccaggccttcgacggctgcggggag 230 |||||| ||||||||||||| || || ||||||||||| | | | ||||| ||| ||||| Sbjct: 28615675 gagtgcctgcgcaaccacgccgcggcgatgggcggccacgtcgtggacggatgcagggag 28615734 Query: 231 tacatgccg 239 | ||||||| Sbjct: 28615735 ttcatgccg 28615743
>dbj|AK111350.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G06, full insert sequence Length = 1096 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 255 ctcaagtgcgccgcctgcggctgtcaccg 283 ||||||||||||||||||||||| ||||| Sbjct: 321 ctcaagtgcgccgcctgcggctgccaccg 349 Score = 50.1 bits (25), Expect = 0.004 Identities = 58/69 (84%) Strand = Plus / Plus Query: 171 gagtgcatgcgcaaccacgcggctgccatgggcggccaggccttcgacggctgcggggag 230 |||||| ||||||||||||| || || ||||||||||| | | | ||||| ||| ||||| Sbjct: 228 gagtgcctgcgcaaccacgccgcggcgatgggcggccacgtcgtggacggatgcagggag 287 Query: 231 tacatgccg 239 | ||||||| Sbjct: 288 ttcatgccg 296
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 50.1 bits (25), Expect = 0.004 Identities = 61/73 (83%) Strand = Plus / Plus Query: 164 gtacaaggagtgcatgcgcaaccacgcggctgccatgggcggccaggccttcgacggctg 223 ||||| ||||||| |||||||||||| || ||| |||||||| ||| |||||||||| Sbjct: 1179562 gtacagggagtgccagcgcaaccacgccgccagcatcggcggccacgccgtcgacggctg 1179621 Query: 224 cggggagtacatg 236 | |||||| |||| Sbjct: 1179622 ccgggagttcatg 1179634
>emb|BX000509.2|CNS08CDZ Oryza sativa chromosome 12, . BAC OJ1085_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121556 Score = 50.1 bits (25), Expect = 0.004 Identities = 61/73 (83%) Strand = Plus / Minus Query: 164 gtacaaggagtgcatgcgcaaccacgcggctgccatgggcggccaggccttcgacggctg 223 ||||| ||||||| |||||||||||| || ||| |||||||| ||| |||||||||| Sbjct: 113220 gtacagggagtgccagcgcaaccacgccgccagcatcggcggccacgccgtcgacggctg 113161 Query: 224 cggggagtacatg 236 | |||||| |||| Sbjct: 113160 ccgggagttcatg 113148
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126974 Score = 50.1 bits (25), Expect = 0.004 Identities = 61/73 (83%) Strand = Plus / Plus Query: 164 gtacaaggagtgcatgcgcaaccacgcggctgccatgggcggccaggccttcgacggctg 223 ||||| ||||||| |||||||||||| || ||| |||||||| ||| |||||||||| Sbjct: 118545 gtacagggagtgccagcgcaaccacgccgccagcatcggcggccacgccgtcgacggctg 118604 Query: 224 cggggagtacatg 236 | |||||| |||| Sbjct: 118605 ccgggagttcatg 118617
>ref|XM_450932.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1169 Score = 48.1 bits (24), Expect = 0.015 Identities = 51/60 (85%) Strand = Plus / Plus Query: 183 aaccacgcggctgccatgggcggccaggccttcgacggctgcggggagtacatgccggcc 242 |||||||||| || ||| |||||||| ||| | ||||||||||| |||| |||| ||||| Sbjct: 257 aaccacgcggttggcatcggcggccacgccgtggacggctgcggcgagttcatggcggcc 316
>dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1005_D12 Length = 150588 Score = 48.1 bits (24), Expect = 0.015 Identities = 51/60 (85%) Strand = Plus / Minus Query: 183 aaccacgcggctgccatgggcggccaggccttcgacggctgcggggagtacatgccggcc 242 |||||||||| || ||| |||||||| ||| | ||||||||||| |||| |||| ||||| Sbjct: 99060 aaccacgcggttggcatcggcggccacgccgtggacggctgcggcgagttcatggcggcc 99001
>dbj|AK108246.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-H06, full insert sequence Length = 1169 Score = 48.1 bits (24), Expect = 0.015 Identities = 51/60 (85%) Strand = Plus / Plus Query: 183 aaccacgcggctgccatgggcggccaggccttcgacggctgcggggagtacatgccggcc 242 |||||||||| || ||| |||||||| ||| | ||||||||||| |||| |||| ||||| Sbjct: 257 aaccacgcggttggcatcggcggccacgccgtggacggctgcggcgagttcatggcggcc 316
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 192 gctgccatgggcggccaggcct 213 |||||||||||||||||||||| Sbjct: 318037 gctgccatgggcggccaggcct 318058
>gb|AY129334.1| Mycobacteriophage Rosebush, complete genome Length = 67480 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 tgggcggccaggccttcgacgg 220 |||||||||||||||||||||| Sbjct: 6240 tgggcggccaggccttcgacgg 6261
>ref|XM_223786.3| PREDICTED: Rattus norvegicus zinc finger protein 503 (predicted) (Zfp503_predicted), mRNA Length = 4210 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 aggcagcggagccgggggcgac 152 |||||||||||||||||||||| Sbjct: 1784 aggcagcggagccgggggcgac 1805
>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence Length = 147941 Score = 42.1 bits (21), Expect = 0.95 Identities = 51/61 (83%) Strand = Plus / Minus Query: 164 gtacaaggagtgcatgcgcaaccacgcggctgccatgggcggccaggccttcgacggctg 223 ||||| ||||||| |||||||||||| || ||| |||||||| ||| |||||||||| Sbjct: 90879 gtacagggagtgccagcgcaaccacgccgccagcatcggcggccacgccgtcgacggctg 90820 Query: 224 c 224 | Sbjct: 90819 c 90819
>dbj|AK030967.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830471O09 product:unclassifiable, full insert sequence Length = 2752 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 aaggagtgcatgcgcaaccac 188 ||||||||||||||||||||| Sbjct: 131 aaggagtgcatgcgcaaccac 151
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 0.95 Identities = 51/61 (83%) Strand = Plus / Plus Query: 164 gtacaaggagtgcatgcgcaaccacgcggctgccatgggcggccaggccttcgacggctg 223 ||||| ||||||| |||||||||||| || ||| |||||||| ||| |||||||||| Sbjct: 1299736 gtacagggagtgccagcgcaaccacgccgccagcatcggcggccacgccgtcgacggctg 1299795 Query: 224 c 224 | Sbjct: 1299796 c 1299796 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ggaggcagcggagccggggg 148 |||||||||||||||||||| Sbjct: 20309078 ggaggcagcggagccggggg 20309059
>dbj|AK063715.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C04, full insert sequence Length = 739 Score = 42.1 bits (21), Expect = 0.95 Identities = 51/61 (83%) Strand = Plus / Plus Query: 164 gtacaaggagtgcatgcgcaaccacgcggctgccatgggcggccaggccttcgacggctg 223 ||||| ||||||| |||||||||||| || ||| |||||||| ||| |||||||||| Sbjct: 206 gtacagggagtgccagcgcaaccacgccgccagcatcggcggccacgccgtcgacggctg 265 Query: 224 c 224 | Sbjct: 266 c 266
>dbj|AP001077.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-767P20, complete sequence Length = 199652 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 ggatcacctgagcctggtgcc 121 ||||||||||||||||||||| Sbjct: 80771 ggatcacctgagcctggtgcc 80791
>dbj|AP005482.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-973H7, complete sequence Length = 170560 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 ggatcacctgagcctggtgcc 121 ||||||||||||||||||||| Sbjct: 130249 ggatcacctgagcctggtgcc 130269
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 0.95 Identities = 51/61 (83%) Strand = Plus / Plus Query: 164 gtacaaggagtgcatgcgcaaccacgcggctgccatgggcggccaggccttcgacggctg 223 ||||| ||||||| |||||||||||| || ||| |||||||| ||| |||||||||| Sbjct: 1297457 gtacagggagtgccagcgcaaccacgccgccagcatcggcggccacgccgtcgacggctg 1297516 Query: 224 c 224 | Sbjct: 1297517 c 1297517 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ggaggcagcggagccggggg 148 |||||||||||||||||||| Sbjct: 20619317 ggaggcagcggagccggggg 20619298
>gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH097M21, complete sequence Length = 131063 Score = 42.1 bits (21), Expect = 0.95 Identities = 48/57 (84%) Strand = Plus / Plus Query: 183 aaccacgcggctgccatgggcggccaggccttcgacggctgcggggagtacatgccg 239 ||||||||||| || || ||||| || || ||||||| |||||||||| ||||||| Sbjct: 9488 aaccacgcggcagcgattggcggtcacgcactcgacggttgcggggagttcatgccg 9544
>gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0542B04, complete sequence Length = 182823 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ggaggcagcggagccggggg 148 |||||||||||||||||||| Sbjct: 153591 ggaggcagcggagccggggg 153572
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 tcacctgagcctggtgccct 123 |||||||||||||||||||| Sbjct: 4224618 tcacctgagcctggtgccct 4224599
>emb|AL160286.16| Human DNA sequence from clone RP11-545A16 on chromosome 1q25.1-31.1 Contains the 3' end of a novel gene, a novel gene, the NPHS2 gene for idiopathic steroid-resistant nephrosis 2 protein (podocin), a centaurin gamma 2 (CENTG2) pseudogene and the 5' end of a novel gene, complete sequence Length = 155416 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gatggatcacctgagcctgg 117 |||||||||||||||||||| Sbjct: 22564 gatggatcacctgagcctgg 22583
>emb|Z25774.2|LDMOFA Leptothrix discophora mof operon and flanking genes Length = 9413 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 gcggctgccatgggcggccaggcc 212 ||||||||||| |||||||||||| Sbjct: 7662 gcggctgccatcggcggccaggcc 7639
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 aggccttcgacggctgcggg 227 |||||||||||||||||||| Sbjct: 212115 aggccttcgacggctgcggg 212134
>gb|AC091271.8| Homo sapiens chromosome 17, clone RP11-758H9, complete sequence Length = 135784 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 gatggatcacctgagcctgg 117 |||||||||||||||||||| Sbjct: 84610 gatggatcacctgagcctgg 84591
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 ggcggccaggccttcgacgg 220 |||||||||||||||||||| Sbjct: 2248381 ggcggccaggccttcgacgg 2248400
>gb|AC109644.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0459F09, complete sequence Length = 143533 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ggaggcagcggagccggggg 148 |||||||||||||||||||| Sbjct: 127124 ggaggcagcggagccggggg 127143
>gb|AC144559.1| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0459F09, complete sequence Length = 143533 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ggaggcagcggagccggggg 148 |||||||||||||||||||| Sbjct: 127124 ggaggcagcggagccggggg 127143
>gb|AC069234.35| Homo sapiens 12 BAC RP11-173P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183354 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 tcacctgagcctggtgccct 123 |||||||||||||||||||| Sbjct: 104396 tcacctgagcctggtgccct 104377
>gb|AC125605.4| Homo sapiens 12 BAC RP11-251H8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 45834 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gatggatcacctgagcctgg 117 |||||||||||||||||||| Sbjct: 34484 gatggatcacctgagcctgg 34503
>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence Length = 152439 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 tgcatgcgcaaccacgcggc 193 |||||||||||||||||||| Sbjct: 35193 tgcatgcgcaaccacgcggc 35212
>gb|AF090926.1|AF090926 Homo sapiens clone HQ0456 PRO0456 mRNA, complete cds Length = 1784 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gatggatcacctgagcctgg 117 |||||||||||||||||||| Sbjct: 1672 gatggatcacctgagcctgg 1691
>emb|AL136293.5|CNS01DVX Human chromosome 14 DNA sequence BAC C-2555C10 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 226035 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gatggatcacctgagcctgg 117 |||||||||||||||||||| Sbjct: 98115 gatggatcacctgagcctgg 98134 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,618,360 Number of Sequences: 3902068 Number of extensions: 1618360 Number of successful extensions: 48369 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48045 Number of HSP's gapped (non-prelim): 321 length of query: 286 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 264 effective length of database: 17,147,199,772 effective search space: 4526860739808 effective search space used: 4526860739808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
