ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast65b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC... 119 8e-24
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
3dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
4dbj|AP005758.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
5ref|XM_476167.1| Oryza sativa (japonica cultivar-group), predic... 103 5e-19
6gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
8ref|XM_462697.1| Oryza sativa (japonica cultivar-group), predic... 88 3e-14
9gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece 88 3e-14
10emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 88 3e-14
11emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4,... 88 3e-14
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
14dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
15dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
16gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
17emb|AL732639.5|CNS08C9E Oryza sativa chromosome 12, . BAC OSJNBa... 86 1e-13
18gb|DQ469712.1| Hordeum vulgare subsp. vulgare serine/threonine k... 82 2e-12
19ref|XM_470653.1| Oryza sativa (japonica cultivar-group), predic... 74 4e-10
20gb|DQ469713.1| Hordeum vulgare subsp. vulgare serine/threonine k... 74 4e-10
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 74 4e-10
22dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
23gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome... 74 4e-10
24gb|AC145364.2| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
25dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
26gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
27dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
28dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
29dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
30dbj|AP003370.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
31dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
32gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 44 0.40
33ref|XM_240482.2| PREDICTED: Rattus norvegicus similar to mKIAA07... 44 0.40
34gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 42 1.6
35gb|AC109272.20| Mus musculus chromosome 7, clone RP23-354L18, co... 40 6.2
36gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 6.2
37ref|XM_535923.2| PREDICTED: Canis familiaris hypothetical LOC478... 40 6.2
38emb|BX323573.7| Zebrafish DNA sequence from clone DKEYP-98F5, co... 40 6.2
39dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.2
40gb|AC108908.16| Mus musculus chromosome 7, clone RP23-179K7, com... 40 6.2 
>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13,
             complete sequence
          Length = 102842

 Score =  119 bits (60), Expect = 8e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                         
Query: 367   tcgcacgcacactttggttggggctggccctcgccgccgtgactctcagggtctttggga 426
             ||||||||||||| ||||||||||||| |||||||||||||| ||| |||||||||||||
Sbjct: 45091 tcgcacgcacactctggttggggctggtcctcgccgccgtgattctgagggtctttggga 45032

                                         
Query: 427   gcttgactggcttcatgttccttccgct 454
             | | |||||||||||| |||||||||||
Sbjct: 45031 gttggactggcttcattttccttccgct 45004
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  111 bits (56), Expect = 2e-21
 Identities = 71/76 (93%)
 Strand = Plus / Plus

                                                                           
Query: 381     tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
               |||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 2373828 tggttggtactggccctcgccgccgtgattctcagcgtctttgggagcttgactggcttc 2373887

                               
Query: 441     atgttccttccgctgc 456
                |||||||||||||||
Sbjct: 2373888 gtgttccttccgctgc 2373903
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>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0095O23
          Length = 159792

 Score =  111 bits (56), Expect = 2e-21
 Identities = 71/76 (93%)
 Strand = Plus / Plus

                                                                         
Query: 381   tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
             |||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 52238 tggttggtactggccctcgccgccgtgattctcagcgtctttgggagcttgactggcttc 52297

                             
Query: 441   atgttccttccgctgc 456
              |||||||||||||||
Sbjct: 52298 gtgttccttccgctgc 52313
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>dbj|AP005758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0433B06
          Length = 126258

 Score =  111 bits (56), Expect = 2e-21
 Identities = 71/76 (93%)
 Strand = Plus / Plus

                                                                          
Query: 381    tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
              |||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 112867 tggttggtactggccctcgccgccgtgattctcagcgtctttgggagcttgactggcttc 112926

                              
Query: 441    atgttccttccgctgc 456
               |||||||||||||||
Sbjct: 112927 gtgttccttccgctgc 112942
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>ref|XM_476167.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3615

 Score =  103 bits (52), Expect = 5e-19
 Identities = 70/76 (92%)
 Strand = Plus / Plus

                                                                        
Query: 381  tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
            |||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 1361 tggttggtactggccctcgccgccgtgattctcagcgtctttgggagcttgactggcttc 1420

                            
Query: 441  atgttccttccgctgc 456
             | |||||||||||||
Sbjct: 1421 gtcttccttccgctgc 1436
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>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0067H15,
              complete sequence
          Length = 184316

 Score =  103 bits (52), Expect = 5e-19
 Identities = 70/76 (92%)
 Strand = Plus / Plus

                                                                          
Query: 381    tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
              |||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 148107 tggttggtactggccctcgccgccgtgattctcagcgtctttgggagcttgactggcttc 148166

                              
Query: 441    atgttccttccgctgc 456
               | |||||||||||||
Sbjct: 148167 gtcttccttccgctgc 148182
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  103 bits (52), Expect = 5e-19
 Identities = 70/76 (92%)
 Strand = Plus / Plus

                                                                           
Query: 381     tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
               |||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 7023184 tggttggtactggccctcgccgccgtgattctcagcgtctttgggagcttgactggcttc 7023243

                               
Query: 441     atgttccttccgctgc 456
                | |||||||||||||
Sbjct: 7023244 gtcttccttccgctgc 7023259
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>ref|XM_462697.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2328

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                       
Query: 381 tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
           |||||||  ||||||||||||||| ||| ||||||  |||||||||||||||||||||||
Sbjct: 673 tggttggtactggccctcgccgccatgattctcagcatctttgggagcttgactggcttc 732

                           
Query: 441 atgttccttccgctgc 456
            | |||||||||||||
Sbjct: 733 gtcttccttccgctgc 748
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>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece
          Length = 120562

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                         
Query: 384   ttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttcatg 443
             |||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||  
Sbjct: 55368 ttggtgctggcccccgacgccgtgactctcagggtctctgggagcttgactggcttcacc 55427

                             
Query: 444   ttccttccgctgccac 459
             |||| |||||| ||||
Sbjct: 55428 ttccatccgctaccac 55443
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>emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009K15,
              complete sequence
          Length = 185021

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                          
Query: 381    tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
              |||||||  ||||||||||||||| ||| ||||||  |||||||||||||||||||||||
Sbjct: 168408 tggttggtactggccctcgccgccatgattctcagcatctttgggagcttgactggcttc 168467

                              
Query: 441    atgttccttccgctgc 456
               | |||||||||||||
Sbjct: 168468 gtcttccttccgctgc 168483
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>emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079F16,
             complete sequence
          Length = 157801

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                         
Query: 381   tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
             |||||||  ||||||||||||||| ||| ||||||  |||||||||||||||||||||||
Sbjct: 14272 tggttggtactggccctcgccgccatgattctcagcatctttgggagcttgactggcttc 14331

                             
Query: 441   atgttccttccgctgc 456
              | |||||||||||||
Sbjct: 14332 gtcttccttccgctgc 14347
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                            
Query: 381      tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
                |||||||  ||||||||||||||| ||| ||||||  |||||||||||||||||||||||
Sbjct: 11845631 tggttggtactggccctcgccgccatgattctcagcatctttgggagcttgactggcttc 11845690

                                
Query: 441      atgttccttccgctgc 456
                 | |||||||||||||
Sbjct: 11845691 gtcttccttccgctgc 11845706
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                            
Query: 381      tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
                |||||||  ||||||||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct: 18142225 tggttggtactggccctcgccgccgtgattctcagcgtctttgggaccttgactggcttc 18142284

                                
Query: 441      atgttccttccgctgc 456
                 | |||||| ||||||
Sbjct: 18142285 gtcttcctttcgctgc 18142300



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 401      cgccgtgactctcagggtctttgggagcttgactggct 438
                |||| |||||||||| |||||||||||||||| |||||
Sbjct: 24449622 cgccatgactctcagcgtctttgggagcttgattggct 24449585
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>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0047E05
          Length = 184323

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                         
Query: 381   tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
             |||||||  ||||||||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct: 65626 tggttggtactggccctcgccgccgtgattctcagcgtctttgggaccttgactggcttc 65685

                             
Query: 441   atgttccttccgctgc 456
              | |||||| ||||||
Sbjct: 65686 gtcttcctttcgctgc 65701
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                            
Query: 390      ctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttcatgttcctt 449
                |||||||||||| || ||| |||||| |||||||||||||||||||||||| | ||||||
Sbjct: 16912317 ctggccctcgccaccatgattctcagcgtctttgggagcttgactggcttcgtcttcctt 16912258

                       
Query: 450      ccgctgc 456
                |||||||
Sbjct: 16912257 ccgctgc 16912251
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                            
Query: 390      ctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttcatgttcctt 449
                |||||||||||| || ||| |||||| |||||||||||||||||||||||| | ||||||
Sbjct: 16865550 ctggccctcgccaccatgattctcagcgtctttgggagcttgactggcttcgtcttcctt 16865491

                       
Query: 450      ccgctgc 456
                |||||||
Sbjct: 16865490 ccgctgc 16865484
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>emb|AL732639.5|CNS08C9E Oryza sativa chromosome 12, . BAC OSJNBa0038H18 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 150238

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                         
Query: 390   ctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttcatgttcctt 449
             |||||||||||| || ||| |||||| |||||||||||||||||||||||| | ||||||
Sbjct: 34360 ctggccctcgccaccatgattctcagcgtctttgggagcttgactggcttcgtcttcctt 34301

                    
Query: 450   ccgctgc 456
             |||||||
Sbjct: 34300 ccgctgc 34294
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>gb|DQ469712.1| Hordeum vulgare subsp. vulgare serine/threonine kinase-like protein
            ABC1036 gene, complete cds
          Length = 29663

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                        
Query: 387  gggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttcatgttc 446
            |||||||||||||| ||| ||||||  |||| ||||||||| | |||| |||||||||||
Sbjct: 9513 gggctggccctcgctgccttgactccgaggggctttgggagttagactagcttcatgttc 9454

                         
Query: 447  cttccgctgccac 459
            |||||||||||||
Sbjct: 9453 cttccgctgccac 9441
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>ref|XM_470653.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 6216

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                        
Query: 380  ttggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggctt 439
            ||||||||  |||||||||| |||||||| || ||| |||| ||||||||||||||| ||
Sbjct: 4579 ttggttggtactggccctcggcgccgtgattcacagcgtctctgggagcttgactggatt 4638

                             
Query: 440  catgttccttccgctgc 456
            ||| |||||||| ||||
Sbjct: 4639 catcttccttccactgc 4655
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>gb|DQ469713.1| Hordeum vulgare subsp. vulgare serine/threonine kinase-like protein
            ABC1040 gene, complete cds
          Length = 21799

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                        
Query: 387  gggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttcatgttc 446
            |||||||||||||| ||| ||||||  |||| ||||||||| | ||||| ||||||||||
Sbjct: 7670 gggctggccctcgctgccttgactccgaggggctttgggagttagactgacttcatgttc 7611

                         
Query: 447  cttccgctgccac 459
            ||||||| |||||
Sbjct: 7610 cttccgccgccac 7598
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                           
Query: 380     ttggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggctt 439
               ||||||||  |||||||||| |||||||| || ||| |||| ||||||||||||||| ||
Sbjct: 9785846 ttggttggtactggccctcggcgccgtgattcacagcgtctctgggagcttgactggatt 9785905

                                
Query: 440     catgttccttccgctgc 456
               ||| |||||||| ||||
Sbjct: 9785906 catcttccttccactgc 9785922
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                           
Query: 380     ttggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggctt 439
               ||||||||  |||||||||| |||||||| || ||| |||| ||||||||||||||| ||
Sbjct: 9783967 ttggttggtactggccctcggcgccgtgattcacagcgtctctgggagcttgactggatt 9784026

                                
Query: 440     catgttccttccgctgc 456
               ||| |||||||| ||||
Sbjct: 9784027 catcttccttccactgc 9784043
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>gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0013D02, complete sequence
          Length = 131883

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                         
Query: 380   ttggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggctt 439
             ||||||||  |||||||||| |||||||| || ||| |||| ||||||||||||||| ||
Sbjct: 88651 ttggttggtactggccctcggcgccgtgattcacagcgtctctgggagcttgactggatt 88592

                              
Query: 440   catgttccttccgctgc 456
             ||| |||||||| ||||
Sbjct: 88591 catcttccttccactgc 88575
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>gb|AC145364.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0062D09, complete sequence
          Length = 160244

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                         
Query: 381   tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
             |||||||  ||||||||||  ||| ||| |||||| ||||||||||||||||||||||| 
Sbjct: 76170 tggttggtactggccctcgttgccatgattctcagtgtctttgggagcttgactggcttt 76111

                             
Query: 441   atgttccttccgctgc 456
              | |||||||||||||
Sbjct: 76110 gtcttccttccgctgc 76095
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                           
Query: 381     tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
               |||||||  ||||||||||  ||| ||| |||||| ||||||||||||||||||||||| 
Sbjct: 8523401 tggttggtactggccctcgttgccatgattctcagtgtctttgggagcttgactggcttt 8523460

                               
Query: 441     atgttccttccgctgc 456
                | |||||||||||||
Sbjct: 8523461 gtcttccttccgctgc 8523476
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                           
Query: 381     tggttggggctggccctcgccgccgtgactctcagggtctttgggagcttgactggcttc 440
               |||||||  ||||||||||  ||| ||| |||||| ||||||||||||||||||||||| 
Sbjct: 8594164 tggttggtactggccctcgttgccatgattctcagtgtctttgggagcttgactggcttt 8594223

                               
Query: 441     atgttccttccgctgc 456
                | |||||||||||||
Sbjct: 8594224 gtcttccttccgctgc 8594239
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 401      cgccgtgactctcagggtctttgggagcttgactggct 438
                |||| |||||||||| |||||||||||||||| |||||
Sbjct: 31117543 cgccatgactctcagcgtctttgggagcttgattggct 31117580



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 401      cgccgtgactctcagggtctttgggagcttgactggct 438
                |||| |||||||||| |||||||||||||||| |||||
Sbjct: 19014987 cgccatgactctcagcgtctttgggagcttgattggct 19014950
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>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0439E07
          Length = 176486

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                    
Query: 401    cgccgtgactctcagggtctttgggagcttgactggct 438
              |||| |||||||||| |||||||||||||||| |||||
Sbjct: 174522 cgccatgactctcagcgtctttgggagcttgattggct 174559
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>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0014K08
          Length = 177263

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 401   cgccgtgactctcagggtctttgggagcttgactggct 438
             |||| |||||||||| |||||||||||||||| |||||
Sbjct: 43888 cgccatgactctcagcgtctttgggagcttgattggct 43925
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>dbj|AP003370.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1129H01
          Length = 101104

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 401   cgccgtgactctcagggtctttgggagcttgactggct 438
             |||| |||||||||| |||||||||||||||| |||||
Sbjct: 72030 cgccatgactctcagcgtctttgggagcttgattggct 71993
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>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1792_D02
          Length = 141649

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 401   cgccgtgactctcagggtctttgggagcttgactggct 438
             |||| |||||||||| |||||||||||||||| |||||
Sbjct: 77828 cgccatgactctcagcgtctttgggagcttgattggct 77791
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 281     ccccgaccacgctaacctccccgccg 306
               |||| |||||||||||||||||||||
Sbjct: 3479894 cccccaccacgctaacctccccgccg 3479919
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>ref|XM_240482.2| PREDICTED: Rattus norvegicus similar to mKIAA0711 protein
            (LOC306617), mRNA
          Length = 1902

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 337  ctgcggccccccggctcacccgcagg 362
            ||||||||||||||| ||||||||||
Sbjct: 1645 ctgcggccccccggcgcacccgcagg 1670
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 150    gccgtgacccgtgcgcgtcagcggt 174
              ||||||||||||||||| |||||||
Sbjct: 370214 gccgtgacccgtgcgcgccagcggt 370190
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>gb|AC109272.20| Mus musculus chromosome 7, clone RP23-354L18, complete sequence
          Length = 202993

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   cgtcgctgcggccccccggc 351
             ||||||||||||||||||||
Sbjct: 71982 cgtcgctgcggccccccggc 72001
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 287     ccacgctaacctccccgccg 306
               ||||||||||||||||||||
Sbjct: 4545032 ccacgctaacctccccgccg 4545051
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>ref|XM_535923.2| PREDICTED: Canis familiaris hypothetical LOC478758 (LOC478758),
           mRNA
          Length = 2037

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 167 tcagcggtcgccgcgttggaggtg 190
           |||||||||||||| |||||||||
Sbjct: 113 tcagcggtcgccgccttggaggtg 90
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>emb|BX323573.7| Zebrafish DNA sequence from clone DKEYP-98F5, complete sequence
          Length = 181694

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    gttgccatcttttggatgag 130
              ||||||||||||||||||||
Sbjct: 173360 gttgccatcttttggatgag 173341
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   acctccccgccgcctcggct 314
             ||||||||||||||||||||
Sbjct: 18987 acctccccgccgcctcggct 19006
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>gb|AC108908.16| Mus musculus chromosome 7, clone RP23-179K7, complete sequence
          Length = 220289

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 332    cgtcgctgcggccccccggc 351
              ||||||||||||||||||||
Sbjct: 188027 cgtcgctgcggccccccggc 188046


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,680,603
Number of Sequences: 3902068
Number of extensions: 2680603
Number of successful extensions: 45396
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44916
Number of HSP's gapped (non-prelim): 480
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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