ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast65b03 |
|---|---|
| Clone Library Name | barley_pub |
>Y1903_CORGL (Q6M4B7) Hypothetical RNA methyltransferase Cgl1903/cg2084 (EC| 2.1.1.-) Length = 412 Score = 32.7 bits (73), Expect = 0.41 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +2 Query: 77 IGAKDGKVSHVRASAPASMCDLQIGARNRRWAAGE 181 IG DG+V V+ P + D++I ++WA GE Sbjct: 27 IGHHDGRVIFVKGGIPGDVVDVEIAQLKKKWARGE 61
>ENO_THEVO (Q979Z9) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)| (2-phospho-D-glycerate hydro-lyase) Length = 401 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Frame = -2 Query: 292 DGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLXXXXXXXXXXXANLQVAHRSRSTS 113 D +Y+TNPD GI+ T V + G +K V+HRS T+ Sbjct: 301 DDLYTTNPDRIRKGIELGSTNAVLIKVNQIGTLTKAQEAASLASSAGLKNVVSHRSGETT 360 Query: 112 PD-MADLAI 89 D +A L++ Sbjct: 361 DDFLAHLSV 369
>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein| Length = 2480 Score = 30.4 bits (67), Expect = 2.0 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = -2 Query: 397 GTAPRRRCAMDASLPRRTA*APSGTTSTMSPCFCPDGMYSTNPDVRHDGIDDA 239 GTA R RC+ D++ P + P G+ S C P DG+D A Sbjct: 441 GTAGRERCSQDSASPASSTGLPEGSEPESSCC----------PRTPEDGVDSA 483
>ENO_DESVH (Q72F92) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)| (2-phospho-D-glycerate hydro-lyase) Length = 437 Score = 30.4 bits (67), Expect = 2.0 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Frame = -2 Query: 292 DGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLXXXXXXXXXXXANLQVAHRSRSTS 113 D ++ TNPD+ GID+ + + G ++ ++HRS T Sbjct: 312 DDIFVTNPDILAQGIDEGVANSILIKLNQIGTLTETLDTIEMAKQAAYTTVISHRSGETE 371 Query: 112 PD-MADLAIFGPNVQETRT 59 +ADLA+ G N + +T Sbjct: 372 DHFIADLAV-GLNAGQIKT 389
>HMX2_MOUSE (P43687) Homeobox protein HMX2 (Homeobox protein Nkx-5.2)| Length = 273 Score = 30.0 bits (66), Expect = 2.7 Identities = 23/95 (24%), Positives = 33/95 (34%) Frame = -2 Query: 304 CFCPDGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLXXXXXXXXXXXANLQVAHRS 125 CFCPD P +H P P+ G GP + + R+ Sbjct: 65 CFCPDPHGPKEPSPKHHTPIPFPCLGTPKGSGGAGPAA------------------SERT 106 Query: 124 RSTSPDMADLAIFGPNVQETRTRLIRRRAPDPVPE 20 SP P+ +E + RL+ +P P PE Sbjct: 107 PFLSPS-------HPDFKEEKERLLPAGSPSPGPE 134
>ENO_THEAC (Q9HJT1) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)| (2-phospho-D-glycerate hydro-lyase) Length = 401 Score = 30.0 bits (66), Expect = 2.7 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Frame = -2 Query: 292 DGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLXXXXXXXXXXXANLQVAHRSRSTS 113 D +Y+TNPD G++ T V + G S V+HRS T+ Sbjct: 301 DDLYTTNPDRIRKGVEKKSTNAVLIKVNQIGTLSAAREAVAVATFAGMKNIVSHRSGETT 360 Query: 112 PD-MADLAI-FGPNVQET 65 D +A L++ FG +T Sbjct: 361 DDFLAHLSVAFGSTFVKT 378
>ENO_DESVM (O32513) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)| (2-phospho-D-glycerate hydro-lyase) Length = 434 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Frame = -2 Query: 292 DGMYSTNPDVRHDGIDDAPTTCVPRSCDGCGPRSKLXXXXXXXXXXXANLQVAHRSRSTS 113 D ++ TNPD+ +GID+ + + G ++ ++HRS T Sbjct: 312 DDIFVTNPDILAEGIDEGVANSILIKLNQIGTLTETLDTIEMAKQAAYTTVISHRSGETE 371 Query: 112 PD-MADLAIFGPNVQETRT 59 ++DLA+ G N + +T Sbjct: 372 DHFISDLAV-GLNAGQIKT 389
>URE3_SILPO (Q5LSQ4) Urease gamma subunit (EC 3.5.1.5) (Urea amidohydrolase| gamma subunit) Length = 100 Score = 29.3 bits (64), Expect = 4.5 Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 6/42 (14%) Frame = -1 Query: 440 ARPRRAEG------EAVARTGDRAAETLRDGRLVAQAHGVGA 333 AR RRA G EA+A D E RDGR VA GA Sbjct: 20 ARKRRARGVKLNHPEAIALISDAVVEGARDGRSVADLMQAGA 61
>URE3_MYCTU (P0A676) Urease gamma subunit (EC 3.5.1.5) (Urea amidohydrolase| gamma subunit) Length = 100 Score = 29.3 bits (64), Expect = 4.5 Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 8/48 (16%) Frame = -1 Query: 440 ARPRRAEG------EAVARTGDRAAETLRDGRLVAQ--AHGVGALGDD 321 AR RRA G EA+A D E RDGR VA+ A G LG D Sbjct: 20 ARRRRARGLRLNHPEAIAVIADHILEGARDGRTVAELMASGREVLGRD 67
>URE3_MYCBO (P0A677) Urease gamma subunit (EC 3.5.1.5) (Urea amidohydrolase| gamma subunit) Length = 100 Score = 29.3 bits (64), Expect = 4.5 Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 8/48 (16%) Frame = -1 Query: 440 ARPRRAEG------EAVARTGDRAAETLRDGRLVAQ--AHGVGALGDD 321 AR RRA G EA+A D E RDGR VA+ A G LG D Sbjct: 20 ARRRRARGLRLNHPEAIAVIADHILEGARDGRTVAELMASGREVLGRD 67
>GNTP_ECOLI (P0AC94) High-affinity gluconate transporter (Gluconate permease 3)| (Gnt-III system) Length = 447 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = +3 Query: 183 GNFERGPQPSQLRGTQVVGASSIPSWRTSGFVEYIPS 293 GN ER P PS L+ Q V +++PS+ S V IP+ Sbjct: 201 GNLER-PTPSFLKADQPVDMNNLPSFGVSILVPLIPA 236
>GNTP_ECO57 (P0AC95) High-affinity gluconate transporter (Gluconate permease 3)| (Gnt-III system) Length = 447 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = +3 Query: 183 GNFERGPQPSQLRGTQVVGASSIPSWRTSGFVEYIPS 293 GN ER P PS L+ Q V +++PS+ S V IP+ Sbjct: 201 GNLER-PTPSFLKADQPVDMNNLPSFGVSILVPLIPA 236 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,577,098 Number of Sequences: 219361 Number of extensions: 975895 Number of successful extensions: 3405 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3312 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3403 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
