>RGA2_YEAST (Q06407) Rho-type GTPase-activating protein 2|
          Length = 1009

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -2

Query: 398 DASKDAGTVSVPRRRSTRPLLYTRMNGKSSVSTTS 294
           ++SK+   + +P R   RPL  TR+NGKS VST +
Sbjct: 140 NSSKEDFPIKLPERSVKRPLSPTRINGKSDVSTNN 174

>DLG5_HUMAN (Q8TDM6) Discs large homolog 5 (Placenta and prostate DLG) (Discs|
            large protein P-dlg)
          Length = 1809

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +3

Query: 54   PARGRART-SPTARRGPTSSPHPARRDP----RHQLEY*ISKLFSLNGPSPASSPSLVLH 218
            P  G A +  P+ R GP + P P RR      +H+LE       +L G SP++SP   L 
Sbjct: 883  PGPGPAHSPQPSKRAGPLTPPKPPRRSDSIKFQHRLETSSESEATLVGSSPSTSPPSALP 942

Query: 219  QHRAPGHEL 245
                PG  +
Sbjct: 943  PDVDPGEPM 951

>SELV_HUMAN (P59797) Selenoprotein V|
          Length = 346

 Score = 32.3 bits (72), Expect = 0.47
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 36  NNKPVCPARGRARTSPTARRG-PTSSPHPARRDPRHQLEY*ISKLFSLNGPSPASSPSLV 212
           NN+   PA   ARTS + R   PT +P P R     +    I  L  +  PSPA +  LV
Sbjct: 2   NNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLV 61

Query: 213 L 215
           L
Sbjct: 62  L 62

>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2014

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +3

Query: 33   RNNKPVCPARGRARTSPTARRGPTSSPHPARRDPRHQLEY*ISKLFSLNGPSPASSPSLV 212
            R NK V P       +   RRGPTS  H A       L   + + + L G +P ++P L 
Sbjct: 1689 RENKRV-PLTALLNQAHNDRRGPTSDSHEALEKEVQSLRAQL-EAWRLRGEAPQNAPRLQ 1746

Query: 213  LHQHRAPGH 239
               H  PG+
Sbjct: 1747 EDSHIPPGY 1755

>HLES_DROME (Q02308) Protein hairless|
          Length = 1077

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +3

Query: 51  CPARGRARTSPTARRGPTSSPHPARRDPRHQLEY*ISKLFSLNGP--SPASSP 203
           CP+ G    SP  RR     PH  R  P H   Y      + NG   SP S+P
Sbjct: 820 CPSPGDRSASPPERRHMQQQPHLQRSSPLHYYMYPPPPQVNGNGSAGSPTSAP 872

>K1543_MOUSE (Q80VC9) Protein KIAA1543|
          Length = 1252

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 45  PVCPARGRARTSPTARRGPTSSPHPARRDPRH 140
           P   +   AR +P ARR P   P P  R P+H
Sbjct: 750 PKAASPSPARRAPAARRSPGPGPSPTPRSPKH 781

>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 12  ARSNGGSRNNKPVCPARGRARTSPTARRGPTSSPHPARRDPRHQLEY*ISKLFSLNGPSP 191
           +RS   SR+  P+  +R     SP+  R P+       R P H+     S   +  GP P
Sbjct: 283 SRSRSRSRSRSPLSHSRSSRSRSPSRSRSPSRCASSRSRSPAHRPRRHSSSRVNPPGPPP 342

>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)|
          Length = 864

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 45  PVCPARGRARTSPTARRGPTSSPHPARRDP 134
           PV  +  + ++ P  RR PTSSP P RR P
Sbjct: 757 PVDDSWLQVQSVPAGRRSPTSSPTPQRRAP 786

>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)|
          Length = 851

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 45  PVCPARGRARTSPTARRGPTSSPHPARRDP 134
           PV  +  + ++ P  RR PTSSP P RR P
Sbjct: 757 PVDDSWLQVQSVPAGRRSPTSSPTPQRRAP 786

>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)|
          Length = 867

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 45  PVCPARGRARTSPTARRGPTSSPHPARRDP 134
           PV  +  + ++ P  RR PTSSP P RR P
Sbjct: 757 PVDDSWLQVQSVPAGRRSPTSSPTPQRRAP 786

>PHLB1_HUMAN (Q86UU1) Pleckstrin homology-like domain family B member 1 (Protein|
           LL5-alpha)
          Length = 1377

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = +3

Query: 57  ARGRARTSPTARRGPTSSPHPARRDPRHQLEY*ISKLFSLNGPSPASSP 203
           ARGR   SP+   G + +PH      R    Y    L SL G SP  SP
Sbjct: 511 ARGRRTRSPSPTLGESLAPHKGSFSGRLSPAY---SLGSLTGASPCQSP 556

>DPOL_HBVWI (P17393) P protein [Includes: DNA-directed DNA polymerase (EC|
           2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 843

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 68  RTHLTNGKARADQLAPPRSTRSASPARILNFEIVQFKWSVPC 193
           + H ++G A      PP S+RS S   +L+   +QF+ S PC
Sbjct: 293 KRHSSSGNAVELHHVPPNSSRSQSQGSVLSCWWLQFRNSKPC 334

>KRUH_DROME (P08155) Krueppel homologous protein 1|
          Length = 845

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +3

Query: 12  ARSNGGSRNNKPVCPARGRARTSPTARRGPTSSPHPARRDPRHQLEY*ISKLFSLNGPSP 191
           A ++ GS    P    +G +  S ++   P SSP PA + PR   +  +SK  +     P
Sbjct: 481 ASTSAGSSAGSP--SLQGVSSNSESSNHSPPSSP-PATKKPRQARQPRVSKTVAATLSIP 537

Query: 192 ASSP 203
            SSP
Sbjct: 538 TSSP 541

>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein|
           (Dystrophia myotonica-containing WD repeat motif
           protein) (DMR-N9 protein)
          Length = 650

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 19/54 (35%), Positives = 20/54 (37%)
 Frame = +3

Query: 42  KPVCPARGRARTSPTARRGPTSSPHPARRDPRHQLEY*ISKLFSLNGPSPASSP 203
           +P  P  G A  S     GP SSP PA   P   L      L  L  P  A  P
Sbjct: 41  QPTQPPPGPAAASGPGAAGPASSPPPAGPGPGPALPAVRLSLVRLGDPDGAGEP 94

>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 54  PARGRARTSPTARR---GPTSSPHPARRDPRHQLEY*ISKLFSLNGPSPASSPSLVLHQH 224
           PA+  A  +P A+    GP +    A   P  Q    I     L GP P+SSPSL    H
Sbjct: 678 PAQDPAPATPVAKGAGLGPQAPDSQASPAPAPQ----IPAAAPLKGPGPSSSPSL---PH 730

Query: 225 RAP 233
           +AP
Sbjct: 731 QAP 733

>K0182_HUMAN (Q14687) Protein KIAA0182 (Fragment)|
          Length = 1157

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/59 (30%), Positives = 20/59 (33%)
 Frame = +3

Query: 42  KPVCPARGRARTSPTARRGPTSSPHPARRDPRHQLEY*ISKLFSLNGPSPASSPSLVLH 218
           +P  PA    R   T R GP       R  P+H             GP P  SP   LH
Sbjct: 471 RPPVPAEAEHRPESTTRPGPNRHEPGGRDPPQH-----------FGGPPPLISPKPQLH 518

>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 501

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 45  PVCPARGRARTSPTARRGPTSSPHP 119
           P  PARGR    P   R PT++P P
Sbjct: 297 PPPPARGRGAPPPPPSRAPTAAPPP 321

>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 501

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 45  PVCPARGRARTSPTARRGPTSSPHP 119
           P  PARGR    P   R PT++P P
Sbjct: 297 PPPPARGRGAPPPPPSRAPTAAPPP 321

>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 45  PVCPARGRARTSPTARRGPTSSPHP 119
           P  PARGR    P   R PT++P P
Sbjct: 300 PPPPARGRGAPPPPPSRAPTAAPPP 324

>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 45  PVCPARGRARTSPTARRGPTSSPHP 119
           P  PARGR    P   R PT++P P
Sbjct: 300 PPPPARGRGAPPPPPSRAPTAAPPP 324

>YBF1_YEAST (P34217) Hypothetical 73.8 kDa protein in SAS3-SEC17 intergenic|
           region
          Length = 668

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +3

Query: 162 KLFSLNGPSPASSPSLVLHQH 224
           +L++LNGPS A+S S +L QH
Sbjct: 582 QLYNLNGPSSANSQSQLLPQH 602

>ATG13_ASPFU (Q4WHN5) Autophagy-related protein 13|
          Length = 958

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +3

Query: 72  RTSPTARRGPTSSPHPARRDPRHQLEY*ISKLFSLNGPSPASSPSLVLHQHR 227
           R S ++ +GPT+ P PA+R+ R Q +  +S       P  +SS +  L+Q R
Sbjct: 781 RASSSSDQGPTALPSPAKRETRSQGDATVSG----QTPELSSSANHNLYQPR 828

>DPOL_HBVWJ (P17394) P protein [Includes: DNA-directed DNA polymerase (EC|
           2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 843

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 74  HLTNGKARADQLAPPRSTRSASPARILNFEIVQFKWSVPC 193
           H ++G A      PP S+RS S   +L+   +QF+ S PC
Sbjct: 295 HSSSGHAVELHHFPPNSSRSQSQGSVLSCWWLQFRNSKPC 334


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,465,386
Number of Sequences: 219361
Number of extensions: 873144
Number of successful extensions: 2824
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2819
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)