ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast65a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGLX_ERWCH (Q46684) Periplasmic beta-glucosidase/beta-xylosidase... 31 1.4
2PURA_THET8 (Q5SLS1) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 29 5.4
3PURA_THET2 (Q72GT4) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 29 5.4
4PURA_BACSU (P29726) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 29 7.1
5Y2144_AQUAE (O67900) Hypothetical protein aq_2144 29 7.1
6ZN121_HUMAN (P58317) Zinc finger protein 121 (Zinc finger protei... 28 9.2
7JAD1C_CRIGR (P41228) Jumonji/ARID domain-containing protein 1C (... 28 9.2
8DUSC_AZOVI (P96192) tRNA-dihydrouridine synthase C (EC 1.-.-.-) 28 9.2

>BGLX_ERWCH (Q46684) Periplasmic beta-glucosidase/beta-xylosidase precursor|
           [Includes: Beta-glucosidase (EC 3.2.1.21) (Gentiobiase)
           (Cellobiase); Beta-xylosidase (EC 3.2.1.37)
           (1,4-beta-D-xylan xylohydrolase) (Xylan
           1,4-beta-xylosidase)]
          Length = 654

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +3

Query: 252 YKDPKQPLGVRIKDLLGRMTLAEKIGQM 335
           Y+D + P   R  DL+ RMTLAEK G M
Sbjct: 58  YEDWRLPAAERAADLVSRMTLAEKAGVM 85



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>PURA_THET8 (Q5SLS1) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 408

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 252 YKDPKQPLGVRIKDLLGRMTLAEKIGQMTQIERENATAEA 371
           Y D  + +G+R  DLL   TL E++ ++   E+ N+T EA
Sbjct: 129 YSDRARRVGIRAGDLLDEATLRERVRRLL-AEKPNSTREA 167



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>PURA_THET2 (Q72GT4) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 408

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 252 YKDPKQPLGVRIKDLLGRMTLAEKIGQMTQIERENATAEA 371
           Y D  + +G+R  DLL   TL E++ ++   E+ N+T EA
Sbjct: 129 YSDRARRVGIRAGDLLDEATLRERVRRLL-AEKPNSTREA 167



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>PURA_BACSU (P29726) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 430

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 252 YKDPKQPLGVRIKDLLGRMTLAEKIGQMTQIERENATAEAM 374
           Y D    +G+RI DLL R   AEK+ +   +E +N   E M
Sbjct: 136 YMDKAARIGIRIADLLDRDAFAEKLER--NLEEKNRLLEKM 174



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>Y2144_AQUAE (O67900) Hypothetical protein aq_2144|
          Length = 298

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 297 LGRMTLAEKIGQMTQIERENATAEAMSKYFI 389
           LG+  L E I  M  IE+EN   E++  YFI
Sbjct: 102 LGKKELQEAIDTMINIEKENLKEESIYDYFI 132



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>ZN121_HUMAN (P58317) Zinc finger protein 121 (Zinc finger protein 20)|
           (Fragment)
          Length = 295

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 185 EAPHLGTVSGTDHHRLYI*TSQFTTVTDGRPGEAAACG 72
           E P+     G  ++R Y+ T  F T T+ +P E   CG
Sbjct: 130 EKPYECNECGKAYNRFYLLTEHFKTHTEEKPFECKVCG 167



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>JAD1C_CRIGR (P41228) Jumonji/ARID domain-containing protein 1C (SmcX protein)|
           (Xe169 protein) (Fragment)
          Length = 180

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 163 TVPRWGASTRPPLFSS-CSAWWRWEARINSSTRIRS 267
           TVPR  +S RP   SS   AWW W+ +      +RS
Sbjct: 10  TVPRLLSSQRPGFTSSPLLAWWEWDTKFLCPLCMRS 45



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>DUSC_AZOVI (P96192) tRNA-dihydrouridine synthase C (EC 1.-.-.-)|
          Length = 309

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +1

Query: 136 YSRW*SVPDTVPRWGASTRPPLFSSCSAWWRWEARINSSTR 258
           YSRW +     P  G+    PL  S S W  W A I    R
Sbjct: 250 YSRWCASSGGAPGSGSRRATPLAGSSSGWACWRAVIRRRPR 290


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,772,133
Number of Sequences: 219361
Number of extensions: 1264562
Number of successful extensions: 3863
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3863
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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