ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast65a03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450594.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1737 Score = 252 bits (127), Expect = 9e-64 Identities = 217/247 (87%) Strand = Plus / Plus Query: 190 ggcggcagcggccggtgtacctgctcaactacagctgccaccttccggacgctgaccgtc 249 |||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 183 ggcggcggcggccggtgtacctgctgaactacagctgccacctcccggacgtggaccgga 242 Query: 250 agtgcaacctggaggtgtgcgagtacttcggcctccgctccaagcgctacaccgacgaga 309 || |||||||||||||||||||||||||||| |||| | | |||| ||||||| | Sbjct: 243 aggtgaacctggaggtgtgcgagtacttcggccagcgctgccgccactactccgacgaca 302 Query: 310 ccgctgacttcatgcggctcatcttccgcaagtccggcctcgggcaggagacgttcgcgc 369 |||| ||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| Sbjct: 303 ccgccgacttcatgcggctcatctaccgcaagtccggcctcggccaggagacgtacgcgc 362 Query: 370 cgcccttcatcttctccggcaagttcgagaagacgctggcgttcgccatccaggaggccg 429 |||||||||||||||||||| ||||| ||||||||| ||||||||| | |||||||| | Sbjct: 363 cgcccttcatcttctccggcgagttccagaagacgcaggcgttcgcggtgcaggaggcgg 422 Query: 430 aggaggg 436 ||||||| Sbjct: 423 aggaggg 429
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 252 bits (127), Expect = 9e-64 Identities = 217/247 (87%) Strand = Plus / Minus Query: 190 ggcggcagcggccggtgtacctgctcaactacagctgccaccttccggacgctgaccgtc 249 |||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 11695646 ggcggcggcggccggtgtacctgctgaactacagctgccacctcccggacgtggaccgga 11695587 Query: 250 agtgcaacctggaggtgtgcgagtacttcggcctccgctccaagcgctacaccgacgaga 309 || |||||||||||||||||||||||||||| |||| | | |||| ||||||| | Sbjct: 11695586 aggtgaacctggaggtgtgcgagtacttcggccagcgctgccgccactactccgacgaca 11695527 Query: 310 ccgctgacttcatgcggctcatcttccgcaagtccggcctcgggcaggagacgttcgcgc 369 |||| ||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| Sbjct: 11695526 ccgccgacttcatgcggctcatctaccgcaagtccggcctcggccaggagacgtacgcgc 11695467 Query: 370 cgcccttcatcttctccggcaagttcgagaagacgctggcgttcgccatccaggaggccg 429 |||||||||||||||||||| ||||| ||||||||| ||||||||| | |||||||| | Sbjct: 11695466 cgcccttcatcttctccggcgagttccagaagacgcaggcgttcgcggtgcaggaggcgg 11695407 Query: 430 aggaggg 436 ||||||| Sbjct: 11695406 aggaggg 11695400
>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711F01 Length = 193091 Score = 252 bits (127), Expect = 9e-64 Identities = 217/247 (87%) Strand = Plus / Minus Query: 190 ggcggcagcggccggtgtacctgctcaactacagctgccaccttccggacgctgaccgtc 249 |||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 130280 ggcggcggcggccggtgtacctgctgaactacagctgccacctcccggacgtggaccgga 130221 Query: 250 agtgcaacctggaggtgtgcgagtacttcggcctccgctccaagcgctacaccgacgaga 309 || |||||||||||||||||||||||||||| |||| | | |||| ||||||| | Sbjct: 130220 aggtgaacctggaggtgtgcgagtacttcggccagcgctgccgccactactccgacgaca 130161 Query: 310 ccgctgacttcatgcggctcatcttccgcaagtccggcctcgggcaggagacgttcgcgc 369 |||| ||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| Sbjct: 130160 ccgccgacttcatgcggctcatctaccgcaagtccggcctcggccaggagacgtacgcgc 130101 Query: 370 cgcccttcatcttctccggcaagttcgagaagacgctggcgttcgccatccaggaggccg 429 |||||||||||||||||||| ||||| ||||||||| ||||||||| | |||||||| | Sbjct: 130100 cgcccttcatcttctccggcgagttccagaagacgcaggcgttcgcggtgcaggaggcgg 130041 Query: 430 aggaggg 436 ||||||| Sbjct: 130040 aggaggg 130034
>dbj|AK105487.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B09, full insert sequence Length = 1737 Score = 252 bits (127), Expect = 9e-64 Identities = 217/247 (87%) Strand = Plus / Plus Query: 190 ggcggcagcggccggtgtacctgctcaactacagctgccaccttccggacgctgaccgtc 249 |||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 183 ggcggcggcggccggtgtacctgctgaactacagctgccacctcccggacgtggaccgga 242 Query: 250 agtgcaacctggaggtgtgcgagtacttcggcctccgctccaagcgctacaccgacgaga 309 || |||||||||||||||||||||||||||| |||| | | |||| ||||||| | Sbjct: 243 aggtgaacctggaggtgtgcgagtacttcggccagcgctgccgccactactccgacgaca 302 Query: 310 ccgctgacttcatgcggctcatcttccgcaagtccggcctcgggcaggagacgttcgcgc 369 |||| ||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| Sbjct: 303 ccgccgacttcatgcggctcatctaccgcaagtccggcctcggccaggagacgtacgcgc 362 Query: 370 cgcccttcatcttctccggcaagttcgagaagacgctggcgttcgccatccaggaggccg 429 |||||||||||||||||||| ||||| ||||||||| ||||||||| | |||||||| | Sbjct: 363 cgcccttcatcttctccggcgagttccagaagacgcaggcgttcgcggtgcaggaggcgg 422 Query: 430 aggaggg 436 ||||||| Sbjct: 423 aggaggg 429
>gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete sequence Length = 139074 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 440 cttcaccgtggtgtcccagctgc 462 ||||||||||||||||||||||| Sbjct: 102035 cttcaccgtggtgtcccagctgc 102013
>ref|XM_469457.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1056 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 440 cttcaccgtggtgtcccagctgc 462 ||||||||||||||||||||||| Sbjct: 567 cttcaccgtggtgtcccagctgc 589
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 440 cttcaccgtggtgtcccagctgc 462 ||||||||||||||||||||||| Sbjct: 28051072 cttcaccgtggtgtcccagctgc 28051094
>dbj|AK024230.1| Homo sapiens cDNA FLJ14168 fis, clone NT2RP2001440, highly similar to Homo sapiens mRNA for 14-3-3gamma Length = 3725 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 83 catggccgcggccgtgtcgtcgctgcgctcc 113 ||||||||||||| ||||||||| ||||||| Sbjct: 262 catggccgcggccatgtcgtcgcagcgctcc 232
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 440 cttcaccgtggtgtcccagctgc 462 ||||||||||||||||||||||| Sbjct: 28142396 cttcaccgtggtgtcccagctgc 28142418
>ref|XM_510512.1| PREDICTED: Pan troglodytes similar to acheron isoform 1; death-associated LA motif protein (LOC453549), mRNA Length = 1577 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 121 tcgccatccaggaggccgagga 142
>ref|XM_516112.1| PREDICTED: Pan troglodytes similar to LKB1-interacting protein 1 (LOC459968), mRNA Length = 4776 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttca 444 ||||||||| |||||||||||||||| Sbjct: 439 ccaggaggctgaggagggcctcttca 464
>ref|NM_002191.2| Homo sapiens inhibin, alpha (INHA), mRNA Length = 1424 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttca 444 ||||||||| |||||||||||||||| Sbjct: 453 ccaggaggctgaggagggcctcttca 478
>ref|NM_197958.1| Homo sapiens La ribonucleoprotein domain family, member 6 (LARP6), transcript variant 2, mRNA Length = 577 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 130 tcgccatccaggaggccgagga 151
>ref|NM_018357.2| Homo sapiens La ribonucleoprotein domain family, member 6 (LARP6), transcript variant 1, mRNA Length = 2065 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 130 tcgccatccaggaggccgagga 151
>gb|BT007675.1| Synthetic construct Homo sapiens inhibin, alpha mRNA, partial cds Length = 1101 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttca 444 ||||||||| |||||||||||||||| Sbjct: 309 ccaggaggctgaggagggcctcttca 334
>gb|BT006954.1| Homo sapiens inhibin, alpha mRNA, complete cds Length = 1101 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttca 444 ||||||||| |||||||||||||||| Sbjct: 309 ccaggaggctgaggagggcctcttca 334
>gb|BC014018.2| Homo sapiens La ribonucleoprotein domain family, member 6, transcript variant 1, mRNA (cDNA clone MGC:20301 IMAGE:4127153), complete cds Length = 2022 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 87 tcgccatccaggaggccgagga 108
>emb|AL833876.1|HSM805170 Homo sapiens mRNA; cDNA DKFZp762N186 (from clone DKFZp762N186) Length = 2024 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 90 tcgccatccaggaggccgagga 111
>emb|CR617999.1| full-length cDNA clone CS0DE002YE07 of Placenta of Homo sapiens (human) Length = 1335 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttca 444 ||||||||| |||||||||||||||| Sbjct: 407 ccaggaggctgaggagggcctcttca 432
>emb|CR592697.1| full-length cDNA clone CS0DF010YN23 of Fetal brain of Homo sapiens (human) Length = 2004 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 119 tcgccatccaggaggccgagga 140
>dbj|AK002058.1| Homo sapiens cDNA FLJ11196 fis, clone PLACE1007688, weakly similar to LA PROTEIN HOMOLOG Length = 2061 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 130 tcgccatccaggaggccgagga 151
>gb|AC158240.5| Pan troglodytes BAC clone CH251-542M19 from chromosome unknown, complete sequence Length = 217064 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttca 444 ||||||||| |||||||||||||||| Sbjct: 113073 ccaggaggctgaggagggcctcttca 113098
>gb|AY095366.1| Squirrel monkey herpesvirus 1 UL28 gene, partial cds; glycoprotein B, UL26.5, and protease genes, complete cds; and capsid associated tegument protein gene, partial cds Length = 6751 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 83 catggccgcggccgtgtcgtcgctgc 108 |||||||||||| ||||||||||||| Sbjct: 6660 catggccgcggctgtgtcgtcgctgc 6635
>gb|AC090868.4| Homo sapiens chromosome 15, clone RP11-795G3, complete sequence Length = 183890 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 51906 tcgccatccaggaggccgagga 51927
>gb|BC009446.1| Homo sapiens La ribonucleoprotein domain family, member 6, transcript variant 1, mRNA (cDNA clone MGC:15884 IMAGE:3529516), complete cds Length = 2018 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 83 tcgccatccaggaggccgagga 104
>gb|BC006082.1| Homo sapiens La ribonucleoprotein domain family, member 6, transcript variant 1, mRNA (cDNA clone MGC:12583 IMAGE:2961587), complete cds Length = 2018 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 83 tcgccatccaggaggccgagga 104
>gb|BC039153.1| Homo sapiens La ribonucleoprotein domain family, member 6, transcript variant 2, mRNA (cDNA clone IMAGE:4344858), complete cds Length = 539 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 92 tcgccatccaggaggccgagga 113
>gb|AC009955.4|AC009955 Homo sapiens BAC clone RP11-256I23 from 2, complete sequence Length = 135033 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttca 444 ||||||||| |||||||||||||||| Sbjct: 45623 ccaggaggctgaggagggcctcttca 45648
>ref|XM_236338.3| PREDICTED: Rattus norvegicus similar to acheron; death-associated LA motif protein (predicted) (LOC315731), mRNA Length = 1658 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 82 tcgccatccaggaggccgagga 103
>gb|AF443829.1| Homo sapiens acheron mRNA, complete cds Length = 2057 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 129 tcgccatccaggaggccgagga 150
>gb|AF443828.1| Homo sapiens acheron mRNA, complete cds Length = 2057 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 129 tcgccatccaggaggccgagga 150
>gb|AY892371.1| Synthetic construct Homo sapiens clone FLH013403.01L inhibin alpha (INHA) mRNA, partial cds Length = 1101 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttca 444 ||||||||| |||||||||||||||| Sbjct: 309 ccaggaggctgaggagggcctcttca 334
>gb|AY889895.1| Synthetic construct Homo sapiens clone FLH013407.01X inhibin alpha (INHA) mRNA, complete cds Length = 1101 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttca 444 ||||||||| |||||||||||||||| Sbjct: 309 ccaggaggctgaggagggcctcttca 334
>dbj|AK130092.1| Homo sapiens cDNA FLJ26582 fis, clone LNF07059 Length = 1537 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgagga 433 |||||||||||||||||||||| Sbjct: 99 tcgccatccaggaggccgagga 120
>gb|BC006391.2| Homo sapiens inhibin, alpha, mRNA (cDNA clone MGC:12547 IMAGE:4126990), complete cds Length = 1384 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttca 444 ||||||||| |||||||||||||||| Sbjct: 389 ccaggaggctgaggagggcctcttca 414
>emb|X04446.1|HSINHAG2 H.sapiens inhA gene, exon 2 Length = 847 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttca 444 ||||||||| |||||||||||||||| Sbjct: 45 ccaggaggctgaggagggcctcttca 70
>gb|BC039076.1| Homo sapiens cDNA clone IMAGE:5171678, containing frame-shift errors Length = 1461 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttca 444 ||||||||| |||||||||||||||| Sbjct: 425 ccaggaggctgaggagggcctcttca 450
>gb|M13144.1|HUMINHAA Human ovarian alpha-inhibin mRNA Length = 1237 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttca 444 ||||||||| |||||||||||||||| Sbjct: 266 ccaggaggctgaggagggcctcttca 291
>gb|M13981.1|HUMINHA Human inhibin A-subunit mRNA, complete cds Length = 1338 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttca 444 ||||||||| |||||||||||||||| Sbjct: 453 ccaggaggctgaggagggcctcttca 478
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 ccgacgagaccgctgacttcatgcg 325 ||||||||||||| ||||||||||| Sbjct: 5638 ccgacgagaccgcagacttcatgcg 5614
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 tggcgttcgccatccaggagg 426 ||||||||||||||||||||| Sbjct: 1943254 tggcgttcgccatccaggagg 1943234
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 77 gtcgtccatggccgcggccgtgtcgtcgc 105 |||||||||||||||| ||| |||||||| Sbjct: 524776 gtcgtccatggccgcgcccgcgtcgtcgc 524748
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 74 gtcgtcgtccatggccgcggccgtgtcgt 102 ||||||||||||||| ||||| ||||||| Sbjct: 21209291 gtcgtcgtccatggcggcggcggtgtcgt 21209319
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 tcgtccatggccgcggccgtg 98 ||||||||||||||||||||| Sbjct: 2089403 tcgtccatggccgcggccgtg 2089423 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 412 tcgccatccaggaggccgaggagg 435 |||||||||||| ||||||||||| Sbjct: 1418974 tcgccatccaggtggccgaggagg 1418997
>dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456F09 Length = 141336 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 74 gtcgtcgtccatggccgcggccgtgtcgt 102 ||||||||||||||| ||||| ||||||| Sbjct: 107952 gtcgtcgtccatggcggcggcggtgtcgt 107980
>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0656E03 Length = 181786 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 74 gtcgtcgtccatggccgcggccgtgtcgt 102 ||||||||||||||| ||||| ||||||| Sbjct: 4667 gtcgtcgtccatggcggcggcggtgtcgt 4695
>dbj|AK107448.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C02, full insert sequence Length = 880 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 74 gtcgtcgtccatggccgcggccgtgtcgt 102 ||||||||||||||| ||||| ||||||| Sbjct: 708 gtcgtcgtccatggcggcggcggtgtcgt 736
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 tccgctccaagcgctacaccg 303 ||||||||||||||||||||| Sbjct: 1151920 tccgctccaagcgctacaccg 1151900
>emb|CT010481.8| M.truncatula DNA sequence from clone MTH2-62G7 on chromosome 3, complete sequence Length = 113400 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 cttcatcttctccggcaagtt 394 ||||||||||||||||||||| Sbjct: 18828 cttcatcttctccggcaagtt 18848
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 77 gtcgtccatggccgcggccgtgtcgtcgc 105 |||||||||||||||| ||| |||||||| Sbjct: 524776 gtcgtccatggccgcgcccgcgtcgtcgc 524748
>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 130544 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 77 gtcgtccatggccgcggccgtgtcgtcgc 105 |||||||||||||||| ||| |||||||| Sbjct: 45536 gtcgtccatggccgcgcccgcgtcgtcgc 45564
>gb|AY574370.1| Macaca mulatta inhibin alpha subunit variant 2 (Inha) mRNA, complete cds Length = 929 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctctt 442 ||||||||| |||||||||||||| Sbjct: 137 ccaggaggctgaggagggcctctt 160
>gb|AY574369.1| Macaca mulatta inhibin alpha subunit variant 1 (Inha) mRNA, complete cds Length = 1214 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctctt 442 ||||||||| |||||||||||||| Sbjct: 422 ccaggaggctgaggagggcctctt 445
>ref|NM_188609.1| Oryza sativa (japonica cultivar-group), Ozsa8212 predicted mRNA Length = 1560 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 tcgtcgtccatggccgcggccgtg 98 ||||||||||||||||| |||||| Sbjct: 1292 tcgtcgtccatggccgccgccgtg 1315
>ref|NM_001032955.1| Macaca mulatta inhibin alpha subunit variant 1 (INHA), mRNA Length = 1214 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctctt 442 ||||||||| |||||||||||||| Sbjct: 422 ccaggaggctgaggagggcctctt 445
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tctcggccatgtcgtcgtcc 83 |||||||||||||||||||| Sbjct: 3355900 tctcggccatgtcgtcgtcc 3355919
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgttcttgggcggcagcggc 201 |||||||||||||||||||| Sbjct: 266040 cgttcttgggcggcagcggc 266021
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tctcggccatgtcgtcgtcc 83 |||||||||||||||||||| Sbjct: 394940 tctcggccatgtcgtcgtcc 394959
>ref|XM_545660.2| PREDICTED: Canis familiaris similar to Inhibin alpha chain precursor (LOC488540), mRNA Length = 1304 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 419 ccaggaggccgaggagggcctcttcacc 446 |||| |||||||||| |||||||||||| Sbjct: 359 ccagaaggccgaggacggcctcttcacc 386
>ref|XM_805963.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510039.60) partial mRNA Length = 3153 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tgacttcatgcggctcatct 333 |||||||||||||||||||| Sbjct: 1600 tgacttcatgcggctcatct 1581
>ref|XM_815696.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509979.130) partial mRNA Length = 3357 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tgacttcatgcggctcatct 333 |||||||||||||||||||| Sbjct: 1804 tgacttcatgcggctcatct 1785
>emb|Z92547.1|HS863K19 Human DNA sequence from clone RP5-863K19 on chromosome Xp22.11-22.2 Contains the 5'end of a novel gene, complete sequence Length = 134845 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cagtgcaacctggaggtgtg 268 |||||||||||||||||||| Sbjct: 63211 cagtgcaacctggaggtgtg 63192
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tctcggccatgtcgtcgtcc 83 |||||||||||||||||||| Sbjct: 91152 tctcggccatgtcgtcgtcc 91171
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tctcggccatgtcgtcgtcc 83 |||||||||||||||||||| Sbjct: 204664 tctcggccatgtcgtcgtcc 204683
>gb|AY263810.1| Eucalyptus globulus histone H4 mRNA, complete cds Length = 451 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ggtcaccgtcttccggcgcg 183 |||||||||||||||||||| Sbjct: 249 ggtcaccgtcttccggcgcg 230
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 ccttcatcttctccggcaag 392 |||||||||||||||||||| Sbjct: 566070 ccttcatcttctccggcaag 566089
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tcgtcgtccatggccgcggc 94 |||||||||||||||||||| Sbjct: 16549592 tcgtcgtccatggccgcggc 16549573
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 tcgtcgtccatggccgcggccgtg 98 ||||||||||||||||| |||||| Sbjct: 7219524 tcgtcgtccatggccgccgccgtg 7219501
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 catccaggaggccgaggagg 435 |||||||||||||||||||| Sbjct: 210053 catccaggaggccgaggagg 210034
>gb|DQ356013.1| Sus scrofa inhibin alpha subunit (INHA) gene, complete cds Length = 2299 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 422 ggaggccgaggagggcctcttcac 445 |||||| ||||||||||||||||| Sbjct: 1343 ggaggctgaggagggcctcttcac 1366
>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485D09 Length = 150594 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 tcgtcgtccatggccgcggccgtg 98 ||||||||||||||||| |||||| Sbjct: 114172 tcgtcgtccatggccgccgccgtg 114149
>ref|NM_214189.1| Sus scrofa inhibin alpha-subunit (INHA), mRNA Length = 1333 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 422 ggaggccgaggagggcctcttcac 445 |||||| ||||||||||||||||| Sbjct: 377 ggaggctgaggagggcctcttcac 400
>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431F01 Length = 143209 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 tcgtcgtccatggccgcggccgtg 98 ||||||||||||||||| |||||| Sbjct: 20954 tcgtcgtccatggccgccgccgtg 20931
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 aggaggccgaggagggcctc 440 |||||||||||||||||||| Sbjct: 523515 aggaggccgaggagggcctc 523534
>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0527E02 Length = 176826 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tcgtcgtccatggccgcggc 94 |||||||||||||||||||| Sbjct: 123007 tcgtcgtccatggccgcggc 122988
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 ctcggccatgtcgtcgtccatggc 88 ||||||||||||||||| |||||| Sbjct: 3526581 ctcggccatgtcgtcgtacatggc 3526604
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 aggaggccgaggagggcctc 440 |||||||||||||||||||| Sbjct: 174011 aggaggccgaggagggcctc 174030
>emb|X03265.1|SSINHAR Porcine mRNA for inhibin alpha-subunit Length = 1333 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 422 ggaggccgaggagggcctcttcac 445 |||||| ||||||||||||||||| Sbjct: 377 ggaggctgaggagggcctcttcac 400
>gb|M13980.1|PIGINHA Pig inhibin A-subunit mRNA, complete cds Length = 1272 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 422 ggaggccgaggagggcctcttcac 445 |||||| ||||||||||||||||| Sbjct: 327 ggaggctgaggagggcctcttcac 350 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,080,166 Number of Sequences: 3902068 Number of extensions: 3080166 Number of successful extensions: 79588 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78194 Number of HSP's gapped (non-prelim): 1386 length of query: 476 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 454 effective length of database: 17,147,199,772 effective search space: 7784828696488 effective search space used: 7784828696488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
