ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast65a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 62 4e-07
2dbj|AB167396.1| Oryza sativa (japonica cultivar-group) UXS-2 mRN... 62 4e-07
3dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic D... 62 4e-07
4dbj|AK101168.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 4e-07
5gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.11
6gb|AC135928.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.11
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.11
8dbj|AB182636.1| Oryza sativa (japonica cultivar-group) UXS-5 mRN... 44 0.11
9dbj|AK122156.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.11
10gb|AY106346.1| Zea mays PCO069392 mRNA sequence 44 0.11
11ref|NM_021134.2| Homo sapiens mitochondrial ribosomal protein L2... 42 0.42
12gb|AC051649.21| Homo sapiens chromosome 11, clone RP11-534I22, c... 42 0.42
13gb|AC123789.6| Homo sapiens chromosome 11, clone RP5-998N23, com... 42 0.42
14gb|BC027710.2| Homo sapiens mitochondrial ribosomal protein L23,... 42 0.42
15gb|AC004556.1|AC004556 Homo sapiens Chromosome 11p15.5 PAC pDJ99... 42 0.42
16gb|U26596.1|HSU26596 Human ribosomal protein L23-related mRNA, c... 42 0.42
17emb|Z49254.1|HSL23REL H.sapiens L23-related mRNA 42 0.42
18gb|AY775254.1| Smilax hugeri voucher GH8675 internal transcribed... 40 1.6
19gb|AY775253.1| Smilax pulverulenta voucher GH4460 internal trans... 40 1.6
20gb|AY775251.1| Smilax lasioneura voucher NY94 internal transcrib... 40 1.6
21gb|AY775250.1| Smilax herbacea voucher Fu99810 internal transcri... 40 1.6
22gb|AY775249.1| Smilax herbacea voucher NYKC111 internal transcri... 40 1.6
23gb|AY775248.1| Smilax herbacea voucher Kew159 internal transcrib... 40 1.6
24gb|AY775247.1| Smilax herbacea voucher NYKC9967 internal transcr... 40 1.6
25gb|AY775236.1| Smilax riparia voucher Fu99902 internal transcrib... 40 1.6
26gb|AY775235.1| Smilax riparia voucher Kim0529 internal transcrib... 40 1.6
27gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 1.6
28emb|Z48540.2|PAATSAGN Pseudomonas aeruginosa atsR, atsB, atsC & ... 40 1.6
29emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome... 40 1.6
30gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold 40 1.6
31dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 1.6
32gb|AE004456.1| Pseudomonas aeruginosa PAO1, section 17 of 529 of... 40 1.6
33gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 38 6.5
34gb|AY775255.1| Smilax jamesii voucher NY3725 internal transcribe... 38 6.5
35gb|AY775244.1| Smilax nipponica voucher Fu950174 internal transc... 38 6.5
36gb|AY775243.1| Smilax nipponica voucher Li00718 internal transcr... 38 6.5
37gb|AY775242.1| Smilax nipponica voucher Fu91277 internal transcr... 38 6.5
38gb|AY775241.1| Smilax riparia var. acuminata voucher Li00726 int... 38 6.5
39gb|AY775240.1| Smilax riparia var. acuminata voucher Fu92105 int... 38 6.5
40gb|AY775239.1| Smilax riparia var. acuminata voucher Fu92052 int... 38 6.5
41gb|AY775238.1| Smilax riparia voucher Fu99914 internal transcrib... 38 6.5
42gb|AY775237.1| Smilax riparia voucher Fu99909 internal transcrib... 38 6.5
43gb|AY775234.1| Smilax riparia voucher Fu912691 internal transcri... 38 6.5
44gb|AY775232.1| Smilax riparia voucher Fu91091 internal transcrib... 38 6.5
45gb|AY775231.1| Smilax riparia voucher Fu010880 internal transcri... 38 6.5
46ref|XM_797953.1| Trypanosoma cruzi strain CL Brener NADH-depende... 38 6.5
47ref|XM_805140.1| Trypanosoma cruzi strain CL Brener NADH-depende... 38 6.5
48ref|XM_797341.1| Trypanosoma cruzi strain CL Brener NADH-depende... 38 6.5
49gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 38 6.5 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 93       gatggcgtcggagctcacgtaccgcggcggggcgg 127
                |||||||||||||||||||||||||||||| ||||
Sbjct: 11893646 gatggcgtcggagctcacgtaccgcggcggcgcgg 11893612
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>dbj|AB167396.1| Oryza sativa (japonica cultivar-group) UXS-2 mRNA for
           UDP-glucuronic acid decarboxylase, complete cds
          Length = 1336

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 93  gatggcgtcggagctcacgtaccgcggcggggcgg 127
           |||||||||||||||||||||||||||||| ||||
Sbjct: 23  gatggcgtcggagctcacgtaccgcggcggcgcgg 57
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>dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1012D10
          Length = 168267

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                 
Query: 93     gatggcgtcggagctcacgtaccgcggcggggcgg 127
              |||||||||||||||||||||||||||||| ||||
Sbjct: 105931 gatggcgtcggagctcacgtaccgcggcggcgcgg 105897
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>dbj|AK101168.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028I19, full
           insert sequence
          Length = 1820

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 93  gatggcgtcggagctcacgtaccgcggcggggcgg 127
           |||||||||||||||||||||||||||||| ||||
Sbjct: 150 gatggcgtcggagctcacgtaccgcggcggcgcgg 184
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>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12,
              complete sequence
          Length = 164064

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 93     gatggcgtcggagctcacgtaccgcggcgg 122
              ||||||||||||||| || |||||||||||
Sbjct: 147351 gatggcgtcggagctgacctaccgcggcgg 147322
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>gb|AC135928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0686B10,
           complete sequence
          Length = 159672

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 93  gatggcgtcggagctcacgtaccgcggcgg 122
           ||||||||||||||| || |||||||||||
Sbjct: 528 gatggcgtcggagctgacctaccgcggcgg 499
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 93       gatggcgtcggagctcacgtaccgcggcgg 122
                ||||||||||||||| || |||||||||||
Sbjct: 17203216 gatggcgtcggagctgacctaccgcggcgg 17203187
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>dbj|AB182636.1| Oryza sativa (japonica cultivar-group) UXS-5 mRNA for
           UDP-glucuronic acid decarboxylase, complete cds
          Length = 1555

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 93  gatggcgtcggagctcacgtaccgcggcgg 122
           ||||||||||||||| || |||||||||||
Sbjct: 83  gatggcgtcggagctgacctaccgcggcgg 112
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>dbj|AK122156.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145O13, full
           insert sequence
          Length = 1734

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 93  gatggcgtcggagctcacgtaccgcggcgg 122
           ||||||||||||||| || |||||||||||
Sbjct: 157 gatggcgtcggagctgacctaccgcggcgg 186
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>gb|AY106346.1| Zea mays PCO069392 mRNA sequence
          Length = 1708

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 93  gatggcgtcggagctcacgtaccgcggcgg 122
           ||||||||| |||||||| |||||||||||
Sbjct: 82  gatggcgtccgagctcacctaccgcggcgg 111
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>ref|NM_021134.2| Homo sapiens mitochondrial ribosomal protein L23 (MRPL23), nuclear
           gene encoding mitochondrial protein, mRNA
          Length = 701

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 ccgcggcggggcggcgtcccc 134
           |||||||||||||||||||||
Sbjct: 479 ccgcggcggggcggcgtcccc 499
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>gb|AC051649.21| Homo sapiens chromosome 11, clone RP11-534I22, complete sequence
          Length = 188519

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 114   ccgcggcggggcggcgtcccc 134
             |||||||||||||||||||||
Sbjct: 41635 ccgcggcggggcggcgtcccc 41615
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>gb|AC123789.6| Homo sapiens chromosome 11, clone RP5-998N23, complete sequence
          Length = 137691

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 114    ccgcggcggggcggcgtcccc 134
              |||||||||||||||||||||
Sbjct: 126109 ccgcggcggggcggcgtcccc 126089
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>gb|BC027710.2| Homo sapiens mitochondrial ribosomal protein L23, mRNA (cDNA clone
           MGC:12795 IMAGE:4298000), complete cds
          Length = 663

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 ccgcggcggggcggcgtcccc 134
           |||||||||||||||||||||
Sbjct: 430 ccgcggcggggcggcgtcccc 450
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>gb|AC004556.1|AC004556 Homo sapiens Chromosome 11p15.5 PAC pDJ998n23 containing H19 gene,
             complete sequence
          Length = 100316

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 114   ccgcggcggggcggcgtcccc 134
             |||||||||||||||||||||
Sbjct: 11577 ccgcggcggggcggcgtcccc 11597
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>gb|U26596.1|HSU26596 Human ribosomal protein L23-related mRNA, complete cds
          Length = 700

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 ccgcggcggggcggcgtcccc 134
           |||||||||||||||||||||
Sbjct: 478 ccgcggcggggcggcgtcccc 498
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>emb|Z49254.1|HSL23REL H.sapiens L23-related mRNA
          Length = 700

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 ccgcggcggggcggcgtcccc 134
           |||||||||||||||||||||
Sbjct: 478 ccgcggcggggcggcgtcccc 498
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>gb|AY775254.1| Smilax hugeri voucher GH8675 internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 830

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 cgcggcggggcggcgtcccc 134
           ||||||||||||||||||||
Sbjct: 172 cgcggcggggcggcgtcccc 191
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>gb|AY775253.1| Smilax pulverulenta voucher GH4460 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 820

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 cgcggcggggcggcgtcccc 134
           ||||||||||||||||||||
Sbjct: 173 cgcggcggggcggcgtcccc 192
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>gb|AY775251.1| Smilax lasioneura voucher NY94 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 829

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 cgcggcggggcggcgtcccc 134
           ||||||||||||||||||||
Sbjct: 173 cgcggcggggcggcgtcccc 192
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>gb|AY775250.1| Smilax herbacea voucher Fu99810 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 833

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 cgcggcggggcggcgtcccc 134
           ||||||||||||||||||||
Sbjct: 173 cgcggcggggcggcgtcccc 192
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>gb|AY775249.1| Smilax herbacea voucher NYKC111 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 833

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 cgcggcggggcggcgtcccc 134
           ||||||||||||||||||||
Sbjct: 173 cgcggcggggcggcgtcccc 192
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>gb|AY775248.1| Smilax herbacea voucher Kew159 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 833

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 cgcggcggggcggcgtcccc 134
           ||||||||||||||||||||
Sbjct: 176 cgcggcggggcggcgtcccc 195
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>gb|AY775247.1| Smilax herbacea voucher NYKC9967 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 833

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 cgcggcggggcggcgtcccc 134
           ||||||||||||||||||||
Sbjct: 173 cgcggcggggcggcgtcccc 192
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>gb|AY775236.1| Smilax riparia voucher Fu99902 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 850

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 cgcggcggggcggcgtcccc 134
           ||||||||||||||||||||
Sbjct: 199 cgcggcggggcggcgtcccc 218
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>gb|AY775235.1| Smilax riparia voucher Kim0529 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 850

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 cgcggcggggcggcgtcccc 134
           ||||||||||||||||||||
Sbjct: 199 cgcggcggggcggcgtcccc 218
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    gcggcggggcggcgtccccg 135
              ||||||||||||||||||||
Sbjct: 847080 gcggcggggcggcgtccccg 847061
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>emb|Z48540.2|PAATSAGN Pseudomonas aeruginosa atsR, atsB, atsC & atsA genes
          Length = 6315

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   gcgaggtccagccctgcgcc 55
            ||||||||||||||||||||
Sbjct: 2205 gcgaggtccagccctgcgcc 2186
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>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13
          Length = 342416

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    ggtccagccctgcgcctcat 59
             ||||||||||||||||||||
Sbjct: 72564 ggtccagccctgcgcctcat 72583
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>gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold
          Length = 489372

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    cattctcacacggggggccc 76
             ||||||||||||||||||||
Sbjct: 93809 cattctcacacggggggccc 93790
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    cctgcggcgaggtccagccc 49
             ||||||||||||||||||||
Sbjct: 16381 cctgcggcgaggtccagccc 16400



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 108     cacgtaccgcggcggggcg 126
               |||||||||||||||||||
Sbjct: 4655168 cacgtaccgcggcggggcg 4655150
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>gb|AE004456.1| Pseudomonas aeruginosa PAO1, section 17 of 529 of the complete genome
          Length = 12534

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   gcgaggtccagccctgcgcc 55
            ||||||||||||||||||||
Sbjct: 6895 gcgaggtccagccctgcgcc 6914
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 116     gcggcggggcggcgtcccc 134
               |||||||||||||||||||
Sbjct: 3123880 gcggcggggcggcgtcccc 3123862
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>gb|AY775255.1| Smilax jamesii voucher NY3725 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 810

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 cgcggcggggcggcgtccc 133
           |||||||||||||||||||
Sbjct: 173 cgcggcggggcggcgtccc 191
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>gb|AY775244.1| Smilax nipponica voucher Fu950174 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 838

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 cgcggcggggcggcgtccc 133
           |||||||||||||||||||
Sbjct: 198 cgcggcggggcggcgtccc 216
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>gb|AY775243.1| Smilax nipponica voucher Li00718 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 853

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 cgcggcggggcggcgtccc 133
           |||||||||||||||||||
Sbjct: 197 cgcggcggggcggcgtccc 215
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>gb|AY775242.1| Smilax nipponica voucher Fu91277 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 855

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 cgcggcggggcggcgtccc 133
           |||||||||||||||||||
Sbjct: 199 cgcggcggggcggcgtccc 217
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>gb|AY775241.1| Smilax riparia var. acuminata voucher Li00726 internal transcribed
           spacer 1, partial sequence; 5.8S ribosomal RNA gene,
           complete sequence; and internal transcribed spacer 2,
           partial sequence
          Length = 852

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 cgcggcggggcggcgtccc 133
           |||||||||||||||||||
Sbjct: 199 cgcggcggggcggcgtccc 217
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>gb|AY775240.1| Smilax riparia var. acuminata voucher Fu92105 internal transcribed
           spacer 1, partial sequence; 5.8S ribosomal RNA gene,
           complete sequence; and internal transcribed spacer 2,
           partial sequence
          Length = 842

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 cgcggcggggcggcgtccc 133
           |||||||||||||||||||
Sbjct: 188 cgcggcggggcggcgtccc 206
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>gb|AY775239.1| Smilax riparia var. acuminata voucher Fu92052 internal transcribed
           spacer 1, partial sequence; 5.8S ribosomal RNA gene,
           complete sequence; and internal transcribed spacer 2,
           partial sequence
          Length = 853

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 cgcggcggggcggcgtccc 133
           |||||||||||||||||||
Sbjct: 199 cgcggcggggcggcgtccc 217
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>gb|AY775238.1| Smilax riparia voucher Fu99914 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 852

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 cgcggcggggcggcgtccc 133
           |||||||||||||||||||
Sbjct: 199 cgcggcggggcggcgtccc 217
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>gb|AY775237.1| Smilax riparia voucher Fu99909 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 700

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 cgcggcggggcggcgtccc 133
           |||||||||||||||||||
Sbjct: 45  cgcggcggggcggcgtccc 63
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>gb|AY775234.1| Smilax riparia voucher Fu912691 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 853

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 cgcggcggggcggcgtccc 133
           |||||||||||||||||||
Sbjct: 199 cgcggcggggcggcgtccc 217
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>gb|AY775232.1| Smilax riparia voucher Fu91091 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 852

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 cgcggcggggcggcgtccc 133
           |||||||||||||||||||
Sbjct: 199 cgcggcggggcggcgtccc 217
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>gb|AY775231.1| Smilax riparia voucher Fu010880 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene, complete
           sequence; and internal transcribed spacer 2, partial
           sequence
          Length = 658

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 cgcggcggggcggcgtccc 133
           |||||||||||||||||||
Sbjct: 4   cgcggcggggcggcgtccc 22
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>ref|XM_797953.1| Trypanosoma cruzi strain CL Brener NADH-dependent fumarate reductase
            (Tc00.1047053510215.10) partial mRNA
          Length = 3429

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 100  tcggagctcacgtaccgcg 118
            |||||||||||||||||||
Sbjct: 3133 tcggagctcacgtaccgcg 3151
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>ref|XM_805140.1| Trypanosoma cruzi strain CL Brener NADH-dependent fumarate reductase
            (Tc00.1047053503849.80) partial mRNA
          Length = 1458

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 100  tcggagctcacgtaccgcg 118
            |||||||||||||||||||
Sbjct: 1162 tcggagctcacgtaccgcg 1180
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>ref|XM_797341.1| Trypanosoma cruzi strain CL Brener NADH-dependent fumarate
           reductase (Tc00.1047053439653.10) partial mRNA
          Length = 429

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 100 tcggagctcacgtaccgcg 118
           |||||||||||||||||||
Sbjct: 133 tcggagctcacgtaccgcg 151
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 108     cacgtaccgcggcggggcggcgt 130
               |||||||| ||||||||||||||
Sbjct: 1301369 cacgtacctcggcggggcggcgt 1301391


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 560,547
Number of Sequences: 3902068
Number of extensions: 560547
Number of successful extensions: 37201
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36762
Number of HSP's gapped (non-prelim): 439
length of query: 137
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 116
effective length of database: 17,151,101,840
effective search space: 1989527813440
effective search space used: 1989527813440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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