| Clone Name | bast64h07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_186621.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1763 Score = 202 bits (102), Expect = 8e-49 Identities = 295/357 (82%), Gaps = 2/357 (0%) Strand = Plus / Plus Query: 84 gccatggcggagcacgacctgacggcgagcgtggcggcgtggatggacccccatctggtc 143 ||||||||||||||||||||||||||| | |||||| | ||||||| ||| ||||| Sbjct: 72 gccatggcggagcacgacctgacggcgcggatggcggggcagatggactgccacctggtg 131 Query: 144 ctgcccgtgctggagttcctccaggagcgcggggtctacgccgacgaggaaatcctgcgg 203 | || ||||||||||||| |||||||| | | | ||||| || |||| |||||| | Sbjct: 132 ttcccgctgctggagttcctgcaggagcgtgcgctgtacgcgaacaaggagatcctggag 191 Query: 204 ggcaagatccgcctcctcggcggcaccaacatggtcgactacgccatggacatccacaag 263 | ||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||| Sbjct: 192 gcgaagctccgcctcctcagcgggaccaacatggtggactacgccatggacatccacaag 251 Query: 264 tcgctccacggcaccgacgaagtccccgccgacatggtcgcccgccgctccgaggtcgtc 323 || ||||||| ||||||||| ||||||| |||||||||| |||||| |||| |||||| Sbjct: 252 tccctccacgacaccgacgaggtccccgacgacatggtcaggcgccgcaccgacgtcgtc 311 Query: 324 gagcggctcagggccctccaggaggcggtcgcgcccatcgtcgccttcctctccagcccg 383 |||||||||| ||| | ||||| ||| ||||||||| |||||||| | || | Sbjct: 312 tccaggctcagggcgctcgacgaggccaccgcccccatcgtctccttcctccagaaccag 371 Query: 384 cagctcgtgcaggagctccacgcc-gacnagcagtacaacctccacatgctccagga 439 |||||||| |||||||| || ||| ||| |||||||||||||||||||||||||||| Sbjct: 372 cagctcgtccaggagct-caggccagacaagcagtacaacctccacatgctccagga 427
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 202 bits (102), Expect = 8e-49 Identities = 295/357 (82%), Gaps = 2/357 (0%) Strand = Plus / Minus Query: 84 gccatggcggagcacgacctgacggcgagcgtggcggcgtggatggacccccatctggtc 143 ||||||||||||||||||||||||||| | |||||| | ||||||| ||| ||||| Sbjct: 6799358 gccatggcggagcacgacctgacggcgcggatggcggggcagatggactgccacctggtg 6799299 Query: 144 ctgcccgtgctggagttcctccaggagcgcggggtctacgccgacgaggaaatcctgcgg 203 | || ||||||||||||| |||||||| | | | ||||| || |||| |||||| | Sbjct: 6799298 ttcccgctgctggagttcctgcaggagcgtgcgctgtacgcgaacaaggagatcctggag 6799239 Query: 204 ggcaagatccgcctcctcggcggcaccaacatggtcgactacgccatggacatccacaag 263 | ||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||| Sbjct: 6799238 gcgaagctccgcctcctcagcgggaccaacatggtggactacgccatggacatccacaag 6799179 Query: 264 tcgctccacggcaccgacgaagtccccgccgacatggtcgcccgccgctccgaggtcgtc 323 || ||||||| ||||||||| ||||||| |||||||||| |||||| |||| |||||| Sbjct: 6799178 tccctccacgacaccgacgaggtccccgacgacatggtcaggcgccgcaccgacgtcgtc 6799119 Query: 324 gagcggctcagggccctccaggaggcggtcgcgcccatcgtcgccttcctctccagcccg 383 |||||||||| ||| | ||||| ||| ||||||||| |||||||| | || | Sbjct: 6799118 tccaggctcagggcgctcgacgaggccaccgcccccatcgtctccttcctccagaaccag 6799059 Query: 384 cagctcgtgcaggagctccacgcc-gacnagcagtacaacctccacatgctccagga 439 |||||||| |||||||| || ||| ||| |||||||||||||||||||||||||||| Sbjct: 6799058 cagctcgtccaggagct-caggccagacaagcagtacaacctccacatgctccagga 6799003 Score = 153 bits (77), Expect = 6e-34 Identities = 202/241 (83%), Gaps = 2/241 (0%) Strand = Plus / Plus Query: 84 gccatggcggagcacgacctgacggcgagcgtggcggcgtggatggacccccatctggtc 143 ||||||||||||||||||||||||||| | |||||| | ||||| ||| ||||| Sbjct: 3627977 gccatggcggagcacgacctgacggcgcggatggcggggcacctggactgccacctggtg 3628036 Query: 144 ctgcccgtgctggagttcctccaggagcgcggggtctacgccgacgaggaaatcctgcgg 203 || || ||||||||||||| |||||||| ||||| | || ||||| ||||| || Sbjct: 3628037 ctcccgctgctggagttcctgcaggagcggcacctctacccggaggaggagatcct-cga 3628095 Query: 204 ggc-aagatccgcctcctcggcggcaccaacatggtcgactacgccatggacatccacaa 262 ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 3628096 ggcgaagatccgcctcctccggggcaccaacatggtcgactacgccatggacatccacaa 3628155 Query: 263 gtcgctccacggcaccgacgaagtccccgccgacatggtcgcccgccgctccgaggtcgt 322 ||||| | ||||||||||||| ||||||| ||||||||| |||||| |||||||||| Sbjct: 3628156 gtcgcgctacggcaccgacgacgtccccgaggacatggtcaagcgccgcgccgaggtcgt 3628215 Query: 323 c 323 | Sbjct: 3628216 c 3628216 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 225 ggcaccaacatggtcgactacgccatggacatccacaagtcgctccacggc 275 |||||||||||||| || ||||||||||||| ||||||| |||||||||| Sbjct: 19000197 ggcaccaacatggtggattacgccatggacacccacaagctgctccacggc 19000247 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 85 ccatggcggagcacgacctgacggcg 110 |||||||||||||||||||||||||| Sbjct: 19000048 ccatggcggagcacgacctgacggcg 19000073 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cgtcgccttcctctccagcc 381 |||||||||||||||||||| Sbjct: 18556296 cgtcgccttcctctccagcc 18556315
>dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0592C06 Length = 160071 Score = 202 bits (102), Expect = 8e-49 Identities = 295/357 (82%), Gaps = 2/357 (0%) Strand = Plus / Minus Query: 84 gccatggcggagcacgacctgacggcgagcgtggcggcgtggatggacccccatctggtc 143 ||||||||||||||||||||||||||| | |||||| | ||||||| ||| ||||| Sbjct: 93492 gccatggcggagcacgacctgacggcgcggatggcggggcagatggactgccacctggtg 93433 Query: 144 ctgcccgtgctggagttcctccaggagcgcggggtctacgccgacgaggaaatcctgcgg 203 | || ||||||||||||| |||||||| | | | ||||| || |||| |||||| | Sbjct: 93432 ttcccgctgctggagttcctgcaggagcgtgcgctgtacgcgaacaaggagatcctggag 93373 Query: 204 ggcaagatccgcctcctcggcggcaccaacatggtcgactacgccatggacatccacaag 263 | ||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||| Sbjct: 93372 gcgaagctccgcctcctcagcgggaccaacatggtggactacgccatggacatccacaag 93313 Query: 264 tcgctccacggcaccgacgaagtccccgccgacatggtcgcccgccgctccgaggtcgtc 323 || ||||||| ||||||||| ||||||| |||||||||| |||||| |||| |||||| Sbjct: 93312 tccctccacgacaccgacgaggtccccgacgacatggtcaggcgccgcaccgacgtcgtc 93253 Query: 324 gagcggctcagggccctccaggaggcggtcgcgcccatcgtcgccttcctctccagcccg 383 |||||||||| ||| | ||||| ||| ||||||||| |||||||| | || | Sbjct: 93252 tccaggctcagggcgctcgacgaggccaccgcccccatcgtctccttcctccagaaccag 93193 Query: 384 cagctcgtgcaggagctccacgcc-gacnagcagtacaacctccacatgctccagga 439 |||||||| |||||||| || ||| ||| |||||||||||||||||||||||||||| Sbjct: 93192 cagctcgtccaggagct-caggccagacaagcagtacaacctccacatgctccagga 93137
>dbj|AK065461.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021F09, full insert sequence Length = 1762 Score = 202 bits (102), Expect = 8e-49 Identities = 295/357 (82%), Gaps = 2/357 (0%) Strand = Plus / Plus Query: 84 gccatggcggagcacgacctgacggcgagcgtggcggcgtggatggacccccatctggtc 143 ||||||||||||||||||||||||||| | |||||| | ||||||| ||| ||||| Sbjct: 71 gccatggcggagcacgacctgacggcgcggatggcggggcagatggactgccacctggtg 130 Query: 144 ctgcccgtgctggagttcctccaggagcgcggggtctacgccgacgaggaaatcctgcgg 203 | || ||||||||||||| |||||||| | | | ||||| || |||| |||||| | Sbjct: 131 ttcccgctgctggagttcctgcaggagcgtgcgctgtacgcgaacaaggagatcctggag 190 Query: 204 ggcaagatccgcctcctcggcggcaccaacatggtcgactacgccatggacatccacaag 263 | ||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||| Sbjct: 191 gcgaagctccgcctcctcagcgggaccaacatggtggactacgccatggacatccacaag 250 Query: 264 tcgctccacggcaccgacgaagtccccgccgacatggtcgcccgccgctccgaggtcgtc 323 || ||||||| ||||||||| ||||||| |||||||||| |||||| |||| |||||| Sbjct: 251 tccctccacgacaccgacgaggtccccgacgacatggtcaggcgccgcaccgacgtcgtc 310 Query: 324 gagcggctcagggccctccaggaggcggtcgcgcccatcgtcgccttcctctccagcccg 383 |||||||||| ||| | ||||| ||| ||||||||| |||||||| | || | Sbjct: 311 tccaggctcagggcgctcgacgaggccaccgcccccatcgtctccttcctccagaaccag 370 Query: 384 cagctcgtgcaggagctccacgcc-gacnagcagtacaacctccacatgctccagga 439 |||||||| |||||||| || ||| ||| |||||||||||||||||||||||||||| Sbjct: 371 cagctcgtccaggagct-caggccagacaagcagtacaacctccacatgctccagga 426
>gb|AY103633.1| Zea mays PCO126860 mRNA sequence Length = 1106 Score = 194 bits (98), Expect = 2e-46 Identities = 220/261 (84%) Strand = Plus / Plus Query: 206 caagatccgcctcctcggcggcaccaacatggtcgactacgccatggacatccacaagtc 265 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 201 caagatccgcctcctcagcggcaccaacatggtcgactacgccatggacatccacaagtc 260 Query: 266 gctccacggcaccgacgaagtccccgccgacatggtcgcccgccgctccgaggtcgtcga 325 |||||||||||||| || || |||| ||||||||| |||||||||||||||||| Sbjct: 261 cctccacggcaccgatgacgttcccgaggacatggtcaagcgccgctccgaggtcgtctc 320 Query: 326 gcggctcagggccctccaggaggcggtcgcgcccatcgtcgccttcctctccagcccgca 385 |||||||| | ||| | ||||| | || || |||||||||||||| | |||||| Sbjct: 321 caggctcaggtcgctcgacgaggccgcagccccgctcgtcgccttcctccagaacccgca 380 Query: 386 gctcgtgcaggagctccacgccgacnagcagtacaacctccacatgctccaggagcgcca 445 ||||||||||||| || ||||| | ||||||||| ||||||||||||||||||| | Sbjct: 381 gctcgtgcaggagttcaggcccgacaaacagtacaacatccacatgctccaggagcgata 440 Query: 446 ccacatcggcccggaccagat 466 ||| ||||| || |||||||| Sbjct: 441 ccagatcggtcctgaccagat 461 Score = 54.0 bits (27), Expect = 4e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 82 cagccatggcggagcacgacctgacggcgagcgtggcggcgtggatggacccccatctgg 141 ||||||||||||| |||||||| |||||| |||||||| | |||||| || |||| Sbjct: 77 cagccatggcggaccacgacctcacggcgctgatggcggcgcagctggaccggcacctgg 136 Query: 142 tcctgcccgtgctggagttcctccaggagcg 172 || | || |||||||||||||||||||||| Sbjct: 137 tcttcccgctgctggagttcctccaggagcg 167
>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1641_C04 Length = 134367 Score = 153 bits (77), Expect = 6e-34 Identities = 202/241 (83%), Gaps = 2/241 (0%) Strand = Plus / Plus Query: 84 gccatggcggagcacgacctgacggcgagcgtggcggcgtggatggacccccatctggtc 143 ||||||||||||||||||||||||||| | |||||| | ||||| ||| ||||| Sbjct: 97294 gccatggcggagcacgacctgacggcgcggatggcggggcacctggactgccacctggtg 97353 Query: 144 ctgcccgtgctggagttcctccaggagcgcggggtctacgccgacgaggaaatcctgcgg 203 || || ||||||||||||| |||||||| ||||| | || ||||| ||||| || Sbjct: 97354 ctcccgctgctggagttcctgcaggagcggcacctctacccggaggaggagatcct-cga 97412 Query: 204 ggc-aagatccgcctcctcggcggcaccaacatggtcgactacgccatggacatccacaa 262 ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 97413 ggcgaagatccgcctcctccggggcaccaacatggtcgactacgccatggacatccacaa 97472 Query: 263 gtcgctccacggcaccgacgaagtccccgccgacatggtcgcccgccgctccgaggtcgt 322 ||||| | ||||||||||||| ||||||| ||||||||| |||||| |||||||||| Sbjct: 97473 gtcgcgctacggcaccgacgacgtccccgaggacatggtcaagcgccgcgccgaggtcgt 97532 Query: 323 c 323 | Sbjct: 97533 c 97533
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0039H02 Length = 169162 Score = 153 bits (77), Expect = 6e-34 Identities = 202/241 (83%), Gaps = 2/241 (0%) Strand = Plus / Plus Query: 84 gccatggcggagcacgacctgacggcgagcgtggcggcgtggatggacccccatctggtc 143 ||||||||||||||||||||||||||| | |||||| | ||||| ||| ||||| Sbjct: 165927 gccatggcggagcacgacctgacggcgcggatggcggggcacctggactgccacctggtg 165986 Query: 144 ctgcccgtgctggagttcctccaggagcgcggggtctacgccgacgaggaaatcctgcgg 203 || || ||||||||||||| |||||||| ||||| | || ||||| ||||| || Sbjct: 165987 ctcccgctgctggagttcctgcaggagcggcacctctacccggaggaggagatcct-cga 166045 Query: 204 ggc-aagatccgcctcctcggcggcaccaacatggtcgactacgccatggacatccacaa 262 ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 166046 ggcgaagatccgcctcctccggggcaccaacatggtcgactacgccatggacatccacaa 166105 Query: 263 gtcgctccacggcaccgacgaagtccccgccgacatggtcgcccgccgctccgaggtcgt 322 ||||| | ||||||||||||| ||||||| ||||||||| |||||| |||||||||| Sbjct: 166106 gtcgcgctacggcaccgacgacgtccccgaggacatggtcaagcgccgcgccgaggtcgt 166165 Query: 323 c 323 | Sbjct: 166166 c 166166
>dbj|AK102119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084M22, full insert sequence Length = 1828 Score = 153 bits (77), Expect = 6e-34 Identities = 202/241 (83%), Gaps = 2/241 (0%) Strand = Plus / Plus Query: 84 gccatggcggagcacgacctgacggcgagcgtggcggcgtggatggacccccatctggtc 143 ||||||||||||||||||||||||||| | |||||| | ||||| ||| ||||| Sbjct: 131 gccatggcggagcacgacctgacggcgcggatggcggggcacctggactgccacctggtg 190 Query: 144 ctgcccgtgctggagttcctccaggagcgcggggtctacgccgacgaggaaatcctgcgg 203 || || ||||||||||||| |||||||| ||||| | || ||||| ||||| || Sbjct: 191 ctcccgctgctggagttcctgcaggagcggcacctctacccggaggaggagatcct-cga 249 Query: 204 ggc-aagatccgcctcctcggcggcaccaacatggtcgactacgccatggacatccacaa 262 ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 250 ggcgaagatccgcctcctccggggcaccaacatggtcgactacgccatggacatccacaa 309 Query: 263 gtcgctccacggcaccgacgaagtccccgccgacatggtcgcccgccgctccgaggtcgt 322 ||||| | ||||||||||||| ||||||| ||||||||| |||||| |||||||||| Sbjct: 310 gtcgcgctacggcaccgacgacgtccccgaggacatggtcaagcgccgcgccgaggtcgt 369 Query: 323 c 323 | Sbjct: 370 c 370
>dbj|AK106535.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B06, full insert sequence Length = 1771 Score = 137 bits (69), Expect = 4e-29 Identities = 176/209 (84%), Gaps = 2/209 (0%) Strand = Plus / Plus Query: 84 gccatggcggagcacgacctgacggcgagcgtggcggcgtggatggacccccatctggtc 143 ||||||||||||||||||||||||||| | |||||| | ||||| ||| ||||| Sbjct: 98 gccatggcggagcacgacctgacggcgcggatggcggggcacctggactgccacctggtg 157 Query: 144 ctgcccgtgctggagttcctccaggagcgcggggtctacgccgacgaggaaatcctgcgg 203 || || ||||||||||||| |||||||| ||||| | || ||||| ||||| || Sbjct: 158 ctcccgctgctggagttcctgcaggagcggcacctctacccggaggaggagatcct-cga 216 Query: 204 ggc-aagatccgcctcctcggcggcaccaacatggtcgactacgccatggacatccacaa 262 ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 217 ggcgaagatccgcctcctccggggcaccaacatggtcgactacgccatggacatccacaa 276 Query: 263 gtcgctccacggcaccgacgaagtccccg 291 ||||| | ||||||||||||| ||||||| Sbjct: 277 gtcgcgctacggcaccgacgacgtccccg 305
>dbj|AK065761.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040O19, full insert sequence Length = 2757 Score = 65.9 bits (33), Expect = 1e-07 Identities = 73/84 (86%), Gaps = 2/84 (2%) Strand = Plus / Plus Query: 357 cccatcgtcgccttcctctccagcccgcagctcgtgcaggagctccacgcc-gacnagca 415 ||||||||| |||||||| | || ||||||||| ||||||||| | ||| ||| |||| Sbjct: 1491 cccatcgtctccttcctccagaaccagcagctcgtccaggagctc-aggccagacaagca 1549 Query: 416 gtacaacctccacatgctccagga 439 |||||||||||||||||||||||| Sbjct: 1550 gtacaacctccacatgctccagga 1573
>ref|XM_478283.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1311 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 225 ggcaccaacatggtcgactacgccatggacatccacaagtcgctccacggc 275 |||||||||||||| || ||||||||||||| ||||||| |||||||||| Sbjct: 148 ggcaccaacatggtggattacgccatggacacccacaagctgctccacggc 198 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 87 atggcggagcacgacctgacggcg 110 |||||||||||||||||||||||| Sbjct: 1 atggcggagcacgacctgacggcg 24
>dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0430F03 Length = 183095 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 225 ggcaccaacatggtcgactacgccatggacatccacaagtcgctccacggc 275 |||||||||||||| || ||||||||||||| ||||||| |||||||||| Sbjct: 102182 ggcaccaacatggtggattacgccatggacacccacaagctgctccacggc 102232 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 85 ccatggcggagcacgacctgacggcg 110 |||||||||||||||||||||||||| Sbjct: 102033 ccatggcggagcacgacctgacggcg 102058
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 143 cctgcccgtgctggagttcctc 164 |||||||||||||||||||||| Sbjct: 1539779 cctgcccgtgctggagttcctc 1539800
>ref|NM_188892.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3158 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 aacctccacatgctccaggag 440 ||||||||||||||||||||| Sbjct: 2456 aacctccacatgctccaggag 2476
>ref|XM_507204.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1484_G09.129-1 mRNA Length = 3539 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 aacctccacatgctccaggag 440 ||||||||||||||||||||| Sbjct: 2721 aacctccacatgctccaggag 2741
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 caccgacgaagtccccgccga 295 ||||||||||||||||||||| Sbjct: 3193322 caccgacgaagtccccgccga 3193342
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 384 cagctcgtgcaggagctccacgccg 408 |||| |||||||||||||||||||| Sbjct: 81756 cagcgcgtgcaggagctccacgccg 81780
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 aacctccacatgctccaggag 440 ||||||||||||||||||||| Sbjct: 16958412 aacctccacatgctccaggag 16958392 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ggtcgcgcccatcgtcgcct 369 |||||||||||||||||||| Sbjct: 18562356 ggtcgcgcccatcgtcgcct 18562375 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ggtcgcgcccatcgtcgcct 369 |||||||||||||||||||| Sbjct: 18535660 ggtcgcgcccatcgtcgcct 18535679 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ggtcgcgcccatcgtcgcct 369 |||||||||||||||||||| Sbjct: 18502202 ggtcgcgcccatcgtcgcct 18502221
>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1484_G09 Length = 124695 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 aacctccacatgctccaggag 440 ||||||||||||||||||||| Sbjct: 105423 aacctccacatgctccaggag 105403
>dbj|AK073703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055B18, full insert sequence Length = 3538 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 aacctccacatgctccaggag 440 ||||||||||||||||||||| Sbjct: 2720 aacctccacatgctccaggag 2740
>dbj|AK070742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061C12, full insert sequence Length = 4317 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 aacctccacatgctccaggag 440 ||||||||||||||||||||| Sbjct: 3622 aacctccacatgctccaggag 3642
>dbj|AK067572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108G24, full insert sequence Length = 3158 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 aacctccacatgctccaggag 440 ||||||||||||||||||||| Sbjct: 2456 aacctccacatgctccaggag 2476
>dbj|AK061683.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-A07, full insert sequence Length = 1704 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 aacctccacatgctccaggag 440 ||||||||||||||||||||| Sbjct: 1014 aacctccacatgctccaggag 1034
>gb|AY187619.1| Oryza sativa (indica cultivar-group) phosphoenolpyruvate carboxylase (PEPC) mRNA, complete cds Length = 2981 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 aacctccacatgctccaggag 440 ||||||||||||||||||||| Sbjct: 2462 aacctccacatgctccaggag 2482
>ref|XM_482200.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1131 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ggtcgcgcccatcgtcgcct 369 |||||||||||||||||||| Sbjct: 687 ggtcgcgcccatcgtcgcct 668
>ref|XM_482196.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1146 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ggtcgcgcccatcgtcgcct 369 |||||||||||||||||||| Sbjct: 705 ggtcgcgcccatcgtcgcct 686
>ref|XM_482192.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ggtcgcgcccatcgtcgcct 369 |||||||||||||||||||| Sbjct: 687 ggtcgcgcccatcgtcgcct 668
>ref|XM_478213.1| Oryza sativa (japonica cultivar-group), mRNA Length = 585 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cgtcgccttcctctccagcc 381 |||||||||||||||||||| Sbjct: 414 cgtcgccttcctctccagcc 433
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gccgacgaggaaatcctgcg 202 |||||||||||||||||||| Sbjct: 2759605 gccgacgaggaaatcctgcg 2759586
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 gccgacgaggaaatcctgcg 202 |||||||||||||||||||| Sbjct: 280680 gccgacgaggaaatcctgcg 280699
>gb|AY596618.1| Saccharum officinarum clone SCCCCL4009G04, complete sequence Length = 811 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctgacggcgagcgtggcggc 121 |||||||||||||||||||| Sbjct: 151 ctgacggcgagcgtggcggc 132
>gb|AC122190.4| Mus musculus BAC clone RP23-41J14 from 12, complete sequence Length = 179390 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ctcccgtccagtatcccctt 23 |||||||||||||||||||| Sbjct: 20221 ctcccgtccagtatcccctt 20202
>emb|X61489.1|ZMPHOPCAR Zea mays pep gene for (C3 type) phosphoenolpyruvate carboxylase Length = 3213 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 aacctccacatgctccagga 439 |||||||||||||||||||| Sbjct: 2510 aacctccacatgctccagga 2529
>emb|X59925.1|SVPEPCG S.vulgare PEPC gene for phosphoenolpyruvate carboxylase Length = 6018 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 aacctccacatgctccagga 439 |||||||||||||||||||| Sbjct: 5101 aacctccacatgctccagga 5120
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 gccgacgaggaaatcctgcg 202 |||||||||||||||||||| Sbjct: 57992 gccgacgaggaaatcctgcg 58011
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 cctgcggggcaagatccgcc 216 |||||||||||||||||||| Sbjct: 2276433 cctgcggggcaagatccgcc 2276414
>gb|DQ407907.1| Ictalurus punctatus clone SCCG01R eukaryotic translation initiation factor 3 subunit 6 48kDa mRNA, partial cds Length = 406 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 227 caccaacatggtcgactacgccatggac 254 |||||||||||| |||| |||||||||| Sbjct: 129 caccaacatggtggacttcgccatggac 156
>gb|AC156278.8| Mus musculus 6 BAC RP24-249N9 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162919 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 366 gccttcctctccagcccgcagctc 389 ||||||||||||||||| |||||| Sbjct: 159508 gccttcctctccagccctcagctc 159485
>dbj|AK140917.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130070A08 product:hypothetical Ras GTPase superfamily/Ras small GTPase, Rab type/Ras small GTPase, Ras type/Ras small GTPase, Rho type/Small GTP-binding protein domain containing protein, full insert sequence Length = 1176 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ctcccgtccagtatcccctt 23 |||||||||||||||||||| Sbjct: 1069 ctcccgtccagtatcccctt 1050
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ccccgccgacatggtcgccc 306 |||||||||||||||||||| Sbjct: 5331802 ccccgccgacatggtcgccc 5331821
>dbj|AK166394.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length enriched library, clone:G930008I03 product:hypothetical Ras small GTPase, Ras type containing protein, full insert sequence Length = 1187 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ctcccgtccagtatcccctt 23 |||||||||||||||||||| Sbjct: 1080 ctcccgtccagtatcccctt 1061
>gb|AC010376.5|AC010376 Homo sapiens chromosome 5 clone CTD-2060F24, complete sequence Length = 144887 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 atccccttctctccctccac 35 |||||||||||||||||||| Sbjct: 55865 atccccttctctccctccac 55884
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ggcgagcgtggcggcgtgga 126 |||||||||||||||||||| Sbjct: 4711830 ggcgagcgtggcggcgtgga 4711811
>emb|BX934475.1| Gallus gallus finished cDNA, clone ChEST378o7 Length = 1099 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 gcccgtgctggagttcctccagga 169 ||||||||||||||||||| |||| Sbjct: 756 gcccgtgctggagttcctcaagga 779
>dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0005E02 Length = 89380 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cgtcgccttcctctccagcc 381 |||||||||||||||||||| Sbjct: 8838 cgtcgccttcctctccagcc 8857
>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0698A06 Length = 156514 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ggcgagcgtggcggcgtgga 126 |||||||||||||||||||| Sbjct: 74429 ggcgagcgtggcggcgtgga 74410
>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1457_D07 Length = 103688 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cgtcgccttcctctccagcc 381 |||||||||||||||||||| Sbjct: 85052 cgtcgccttcctctccagcc 85071
>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0671F11 Length = 159409 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ggtcgcgcccatcgtcgcct 369 |||||||||||||||||||| Sbjct: 144379 ggtcgcgcccatcgtcgcct 144398 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ggtcgcgcccatcgtcgcct 369 |||||||||||||||||||| Sbjct: 117683 ggtcgcgcccatcgtcgcct 117702 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ggtcgcgcccatcgtcgcct 369 |||||||||||||||||||| Sbjct: 84225 ggtcgcgcccatcgtcgcct 84244
>gb|AC005823.1|AC005823 Homo sapiens chromosome 17, clone hRPK.1018_N_14, complete sequence Length = 185116 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 ttcctctccagcccgcagct 388 |||||||||||||||||||| Sbjct: 138350 ttcctctccagcccgcagct 138331
>gb|AC163357.5| Mus musculus BAC clone RP23-3K10 from chromosome 12, complete sequence Length = 236266 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ctcccgtccagtatcccctt 23 |||||||||||||||||||| Sbjct: 101558 ctcccgtccagtatcccctt 101577
>ref|NM_001033248.1| Mus musculus gene model 266, (NCBI) (Gm266), mRNA Length = 1187 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ctcccgtccagtatcccctt 23 |||||||||||||||||||| Sbjct: 1080 ctcccgtccagtatcccctt 1061 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,363,616 Number of Sequences: 3902068 Number of extensions: 3363616 Number of successful extensions: 87272 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86383 Number of HSP's gapped (non-prelim): 880 length of query: 482 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 460 effective length of database: 17,147,199,772 effective search space: 7887711895120 effective search space used: 7887711895120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)