>UCRI_MAIZE (P49727) Ubiquinol-cytochrome c reductase iron-sulfur subunit,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein) (RISP)
          Length = 273

 Score =  162 bits (410), Expect = 4e-40
 Identities = 80/119 (67%), Positives = 89/119 (74%)
 Frame = +2

Query: 107 MLRVAGRRLSSSLSWRPAATVXXXXXXXXXXXXXXXXXXXXXYQRRFAIESPFFTAARGF 286
           MLRVAGRRLSSSLSWRPAA V                      Q RF+I+SPFF A+RGF
Sbjct: 1   MLRVAGRRLSSSLSWRPAAAVARGPLAGAGVPDRDDDSARGRSQPRFSIDSPFFVASRGF 60

Query: 287 SPAETLVPRNQDAGLVELPATVAALKNPNSXILYDQYNHERYPPGDPSKRAFAYFVLSG 463
           S  ET+VPRNQDAGL +LPATVAA+KNPN  ++YD+YNHERYPPGDPSKRAFAYFVLSG
Sbjct: 61  SSTETVVPRNQDAGLADLPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFVLSG 119

>UCRI2_TOBAC (P51132) Ubiquinol-cytochrome c reductase iron-sulfur subunit 2,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein 2) (RISP2)
          Length = 272

 Score = 96.3 bits (238), Expect = 3e-20
 Identities = 55/120 (45%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
 Frame = +2

Query: 107 MLRVAGRRLSSSLSWRPAATVXXXXXXXXXXXXXXXXXXXXXYQRRFAIESPFFTAARGF 286
           MLR+AGRR SS   W   +                            ++ S F    RGF
Sbjct: 1   MLRIAGRRASSLSRWPVRSVAPSSSAFISANHFSSDDDSSSPRSISPSLASVFLHHTRGF 60

Query: 287 SPAETLVPRNQDAGLV-ELPATVAALKNPNSXILYDQYNHERYPPGDPSKRAFAYFVLSG 463
           S     V    D GLV +LP TVAA+KNP S I+YD++NHERYPPGDPSKRAFAYFVL+G
Sbjct: 61  S--SNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTG 118

>UCRI3_TOBAC (P51133) Ubiquinol-cytochrome c reductase iron-sulfur subunit 3,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein 3) (RISP3)
          Length = 268

 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 54/119 (45%), Positives = 71/119 (59%)
 Frame = +2

Query: 107 MLRVAGRRLSSSLSWRPAATVXXXXXXXXXXXXXXXXXXXXXYQRRFAIESPFFTAARGF 286
           MLR+AGR+LSSS + R ++                            ++ S F    RGF
Sbjct: 1   MLRIAGRKLSSSAATRSSSAFFTRNPFTFTDDSSSPARSPSPA----SLASQFLDQFRGF 56

Query: 287 SPAETLVPRNQDAGLVELPATVAALKNPNSXILYDQYNHERYPPGDPSKRAFAYFVLSG 463
           S + ++ P +Q   + +LPATVAA+KNP+S I+YD  NHERYPPGDPSKRAFAYFVL+G
Sbjct: 57  S-SNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTG 114

>UCRI_SOLTU (P37841) Ubiquinol-cytochrome c reductase iron-sulfur subunit,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein) (RISP)
          Length = 265

 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 57/119 (47%), Positives = 72/119 (60%)
 Frame = +2

Query: 107 MLRVAGRRLSSSLSWRPAATVXXXXXXXXXXXXXXXXXXXXXYQRRFAIESPFFTAARGF 286
           MLRVAGRRLSSS + R ++T                           ++ S F    RGF
Sbjct: 1   MLRVAGRRLSSSAA-RSSSTFFTRSSFTVTDDSSPARSPSP------SLTSSFLDQIRGF 53

Query: 287 SPAETLVPRNQDAGLVELPATVAALKNPNSXILYDQYNHERYPPGDPSKRAFAYFVLSG 463
           S + ++ P +Q   + +LPATVAA+KNP+S I+YD  NHERYPPGDPSKRAFAYFVL+G
Sbjct: 54  S-SNSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTG 111

>UCRI5_TOBAC (P51135) Ubiquinol-cytochrome c reductase iron-sulfur subunit 5,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein 5) (RISP5)
          Length = 268

 Score = 95.5 bits (236), Expect = 6e-20
 Identities = 54/119 (45%), Positives = 71/119 (59%)
 Frame = +2

Query: 107 MLRVAGRRLSSSLSWRPAATVXXXXXXXXXXXXXXXXXXXXXYQRRFAIESPFFTAARGF 286
           MLR+AGR+LSSS + R ++                            ++ S F    RGF
Sbjct: 1   MLRIAGRKLSSSAAARSSSAFFTRNPFTFTDDSSSPTRSPSPT----SLASQFLDQFRGF 56

Query: 287 SPAETLVPRNQDAGLVELPATVAALKNPNSXILYDQYNHERYPPGDPSKRAFAYFVLSG 463
           S + ++ P +Q   + +LPATVAA+KNP+S I+YD  NHERYPPGDPSKRAFAYFVL+G
Sbjct: 57  S-SNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTG 114

>UCRI1_TOBAC (P49729) Ubiquinol-cytochrome c reductase iron-sulfur subunit 1,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein 1) (RISP1) (Fragment)
          Length = 258

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 45/73 (61%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
 Frame = +2

Query: 248 AIESPFFTAARGFSPAETLVPRNQDAGLV-ELPATVAALKNPNSXILYDQYNHERYPPGD 424
           ++ S F    RGFS     V    D GLV +LP TVAA+KNP S I+YD++NHERYPPGD
Sbjct: 34  SLASVFLHHTRGFS--SNSVSPAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGD 91

Query: 425 PSKRAFAYFVLSG 463
           PSKRAFAYFVL+G
Sbjct: 92  PSKRAFAYFVLTG 104

>UCRI4_TOBAC (P51134) Ubiquinol-cytochrome c reductase iron-sulfur subunit 4,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein 4) (RISP4)
          Length = 236

 Score = 85.5 bits (210), Expect = 6e-17
 Identities = 44/73 (60%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
 Frame = +2

Query: 248 AIESPFFTAARGFSPAETLVPRNQDAGLV-ELPATVAALKNPNSXILYDQYNHERYPPGD 424
           ++ S  F+   GFS     V    D GLV +LP TVAA+KNP S I+YD++NHERYPPGD
Sbjct: 12  SVTSNSFSIISGFS--SNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGD 69

Query: 425 PSKRAFAYFVLSG 463
           PSKRAFAYFVL+G
Sbjct: 70  PSKRAFAYFVLTG 82

>MBTP1_RAT (Q9WTZ3) Membrane-bound transcription factor site 1 protease|
           precursor (EC 3.4.21.-) (S1P endopeptidase) (Site-1
           protease) (Subtilisin/kexin isozyme 1) (SKI-1)
          Length = 1052

 Score = 35.0 bits (79), Expect = 0.095
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 287 SPAETLVPRNQD-AGLVELPATVAALKNP--NSXILYDQYNHERYPPG 421
           SPAET +    +    V+LP  V  +  P  +  +L+DQY++ RYPPG
Sbjct: 589 SPAETELKNGAEHTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPG 636

>MBTP1_MOUSE (Q9WTZ2) Membrane-bound transcription factor site 1 protease|
           precursor (EC 3.4.21.-) (S1P endopeptidase) (Site-1
           protease) (Subtilisin/kexin isozyme 1) (SKI-1)
           (Sterol-regulated luminal protease)
          Length = 1052

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 287 SPAET-LVPRNQDAGLVELPATVAALKNP--NSXILYDQYNHERYPPG 421
           SPAET L    +    V+LP  V  +  P  +  +L+DQY++ RYPPG
Sbjct: 589 SPAETELHSGAEHTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPG 636

>MBTP1_CRIGR (Q9Z2A8) Membrane-bound transcription factor site 1 protease|
           precursor (EC 3.4.21.-) (S1P endopeptidase) (Site-1
           protease) (Subtilisin/kexin-isozyme 1) (SKI-1)
           (Sterol-regulated luminal protease)
          Length = 1052

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 287 SPAETLVPRNQD-AGLVELPATVAALKNP--NSXILYDQYNHERYPPG 421
           SPAET      +    V+LP  V  +  P  +  +L+DQY++ RYPPG
Sbjct: 589 SPAETEAKNGAEHTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPG 636

>MBTP1_HUMAN (Q14703) Membrane-bound transcription factor site 1 protease|
           precursor (EC 3.4.21.-) (S1P endopeptidase) (Site-1
           protease) (Subtilisin/kexin-isozyme 1) (SKI-1)
          Length = 1052

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 287 SPAETLVPRN-QDAGLVELPATVAALKNP--NSXILYDQYNHERYPPG 421
           SPAET      +    V+LP  V  +  P  +  +L+DQY++ RYPPG
Sbjct: 589 SPAETESKNGAEQTSTVKLPIKVKIIPTPPRSKRVLWDQYHNLRYPPG 636

>YD61_SCHPO (Q10313) Hypothetical protein C17G8.01c in chromosome I|
          Length = 787

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +2

Query: 248 AIESPFFTAARGFSPAETLVPRNQDAGLVELPATVAALKNPNSXILYDQYNHERYPPGDP 427
           AI + F+   + F PA      N D  ++EL   + +L+N    + Y + N     P DP
Sbjct: 512 AIMNTFYKQYKPFDPAGNKHDANYD-DIIELDPLIGSLENARRIVNYFKKNIPELIPNDP 570

Query: 428 SKRAFA 445
           S   +A
Sbjct: 571 SDDDYA 576

>A85A_MYCLE (Q05861) Antigen 85-A precursor (85A) (Antigen 85 complex A)|
           (Ag85A) (Mycolyl transferase 85A) (EC 2.3.1.-)
           (Fibronectin-binding protein A)
          Length = 330

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 401 DCTGHKGFXSWGSSVQPQWLGVQPTQHLGSV 309
           D  G+K    WG S  P W    PT ++G++
Sbjct: 212 DAGGYKAADMWGPSTDPAWKRNDPTVNVGTL 242

>GPTC2_HUMAN (Q9NW75) G patch domain-containing protein 2|
          Length = 528

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 44  PSRD*TTIPNLSEEDEDDADEMLRVAGRRLSSSLS 148
           PS+D     N +++D  D+D+ + VA RR SS+L+
Sbjct: 99  PSKDYRENHNNNKKDHSDSDDQMLVAKRRPSSNLN 133

>P3P_LACLC (P15292) PIII-type proteinase precursor (EC 3.4.21.96) (Lactocepin)|
           (Cell wall-associated serine proteinase)
          Length = 1902

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 308 PRNQDAGLVELPATVAAL-KNPNSXILYDQY 397
           PR Q AGLV++ A + AL KNP++ +  + Y
Sbjct: 683 PRRQGAGLVDVKAAIDALEKNPSTVVAENGY 713

>P2P_LACPA (Q02470) PII-type proteinase precursor (EC 3.4.21.96) (Lactocepin)|
           (Cell wall-associated serine proteinase) (LP151)
          Length = 1902

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 308 PRNQDAGLVELPATVAAL-KNPNSXILYDQY 397
           PR Q AGLV++ A + AL KNP++ +  + Y
Sbjct: 683 PRRQGAGLVDVKAAIDALEKNPSTVVAENGY 713

>P2P_LACLC (P15293) PII-type proteinase precursor (EC 3.4.21.96) (Lactocepin)|
           (Cell wall-associated serine proteinase) (LP151)
          Length = 1902

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 308 PRNQDAGLVELPATVAAL-KNPNSXILYDQY 397
           PR Q AGLV++ A + AL KNP++ +  + Y
Sbjct: 683 PRRQGAGLVDVKAAIDALEKNPSTVVAENGY 713

>P1P_LACLC (P16271) PI-type proteinase precursor (EC 3.4.21.-)|
           (Wall-associated serine proteinase)
          Length = 1902

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 308 PRNQDAGLVELPATVAAL-KNPNSXILYDQY 397
           PR Q AGLV++ A + AL KNP++ +  + Y
Sbjct: 683 PRRQGAGLVDVKAAIDALEKNPSTVVAENGY 713


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,088,147
Number of Sequences: 219361
Number of extensions: 830617
Number of successful extensions: 2460
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2454
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)