Clone Information

BLAST Search Result

Clone Name	bast64h04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_190224.1\| Oryza sativa (japonica cultivar-group), predic...	305	8e-80
2	dbj\|AK099151.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	305	8e-80
3	dbj\|AK063674.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	305	8e-80
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	222	9e-55
5	dbj\|AP003407.3\| Oryza sativa (japonica cultivar-group) genomic D...	222	9e-55
6	gb\|AY904340.1\| Hordeum vulgare subsp. vulgare 2-alkenal reductas...	90	8e-15
7	ref\|XM_473036.1\| Oryza sativa (japonica cultivar-group), predic...	74	5e-10
8	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	74	5e-10
9	dbj\|AK109382.2\| Oryza sativa (japonica cultivar-group) cDNA clon...	74	5e-10
10	dbj\|AK069136.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	74	5e-10
11	emb\|AL606627.3\|OSJN00052 Oryza sativa genomic DNA, chromosome 4,...	74	5e-10
12	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
13	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	52	0.002
14	emb\|AL731740.4\|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb...	52	0.002
15	gb\|AE005023.1\| Halobacterium sp. NRC-1 section 54 of 170 of the ...	48	0.029
16	gb\|AY109926.1\| Zea mays CL32876_1 mRNA sequence	48	0.029
17	gb\|CP000076.1\| Pseudomonas fluorescens Pf-5, complete genome	46	0.11
18	gb\|DQ213100.1\| Taeniopygia guttata clone 0058P0015F04 MGC75753-l...	44	0.44
19	gb\|AC142212.4\| Mus musculus BAC clone RP24-491O6 from chromosome...	44	0.44
20	gb\|AC125121.4\| Mus musculus BAC clone RP24-267O4 from chromosome...	44	0.44
21	gb\|AC135643.2\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.44
22	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.44
23	dbj\|AK104386.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.44
24	dbj\|AK071631.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.44
25	dbj\|AK060453.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.44
26	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.44
27	gb\|CP000152.1\| Burkholderia sp. 383 chromosome 2, complete sequence	42	1.8
28	ref\|XM_584500.2\| PREDICTED: Bos taurus similar to NAD-dependent ...	42	1.8
29	ref\|XM_844550.1\| PREDICTED: Canis familiaris similar to nNOS-int...	42	1.8
30	gb\|AE005875.1\| Caulobacter crescentus CB15 section 201 of 359 of...	42	1.8
31	emb\|AJ315120.1\|CIN315120 Canthium inerme internal transcribed sp...	42	1.8
32	gb\|AY714813.1\| Cercopithecine herpesvirus 2, complete genome	40	6.9
33	gb\|AE017353.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	6.9
34	ref\|XM_592838.2\| PREDICTED: Bos taurus similar to Kelch repeat a...	40	6.9
35	emb\|AJ617750.1\| Canthium ciliatum ITS1, 5.8s rRNA gene and ITS2,...	40	6.9
36	ref\|XM_568348.1\| Cryptococcus neoformans var. neoformans JEC21 a...	40	6.9
37	ref\|XM_773580.1\| Giardia lamblia ATCC 50803 hypothetical protein...	40	6.9
38	gb\|CP000091.1\| Ralstonia eutropha JMP134 chromosome 2, complete ...	40	6.9
39	dbj\|AK144253.1\| Mus musculus 16 days neonate male diencephalon c...	40	6.9
40	emb\|CR936257.1\| Natronomonas pharaonis DSM 2160 complete genome	40	6.9
41	emb\|X07567.2\|RCNIFAB Rhodobacter capsulatus nifA1, nifB1, nifZ g...	40	6.9
42	gb\|AF033203.1\|AF033203 Rhodobacter capsulatus NifAII protein (ni...	40	6.9
43	emb\|AL645853.12\| Mouse DNA sequence from clone RP23-329L1 on chr...	40	6.9

>ref|NM_190224.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1080

 Score =  305 bits (154), Expect = 8e-80
 Identities = 297/342 (86%), Gaps = 7/342 (2%)
 Strand = Plus / Plus

                                                                       
Query: 147 ggcgaggaaccggaaggtggtgctgcgggagtacatca---gccgcgcgccgagggagga 203
           |||||||||| |||||||||||||||| |||||||||    ||||  |||||||||||||
Sbjct: 27  ggcgaggaacaggaaggtggtgctgcgcgagtacatcgccggccggccgccgagggagga 86

                                                                       
Query: 204 cgacatgtcgctcgtcgacgggggcgccgtgccgctgcgcgtccccgagggcgccgcc-- 261
           |||||||  |||||||||||| ||| | ||| | |||||||| || |||| |||||||  
Sbjct: 87  cgacatggtgctcgtcgacggcggcacggtggccctgcgcgtgccggaggccgccgcccc 146

                                                                       
Query: 262 -ggcccggccgtgctggtgaagaacctctacctctcctgcgacccctacatgcgcggccg 320
            | |||||| || || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 147 cgccccggcggtcctcgtgaagaatctctacctctcctgcgacccctacatgcgcggccg 206

                                                                       
Query: 321 gatgcgggacttccacggctcctacatccctccgttcaagcccggatctgttatagaagg 380
           |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 207 gatgcgggacttccacggatcctacatcccgccgttcaagcccggatccgttattgaagg 266

                                                                       
Query: 381 gctgggcgtggcgagagtggtggactccactcatccggggttcgtcgccggcgacattgt 440
           ||| || ||||||||||||||||| ||||| |||||||| |||  ||| |||||||||||
Sbjct: 267 gcttggagtggcgagagtggtggattccacccatccgggattcagcgcgggcgacattgt 326

                                                     
Query: 441 ttcgggaatgactggctgggagg-atacagcctgattgacag 481
            || || |||||||| ||||||| |||||| ||||| |||||
Sbjct: 327 ctccgggatgactggttgggaggaatacagtctgatcgacag 368

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>dbj|AK099151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064D04, full
           insert sequence
          Length = 1166

 Score =  305 bits (154), Expect = 8e-80
 Identities = 297/342 (86%), Gaps = 7/342 (2%)
 Strand = Plus / Plus

                                                                       
Query: 147 ggcgaggaaccggaaggtggtgctgcgggagtacatca---gccgcgcgccgagggagga 203
           |||||||||| |||||||||||||||| |||||||||    ||||  |||||||||||||
Sbjct: 60  ggcgaggaacaggaaggtggtgctgcgcgagtacatcgccggccggccgccgagggagga 119

                                                                       
Query: 204 cgacatgtcgctcgtcgacgggggcgccgtgccgctgcgcgtccccgagggcgccgcc-- 261
           |||||||  |||||||||||| ||| | ||| | |||||||| || |||| |||||||  
Sbjct: 120 cgacatggtgctcgtcgacggcggcacggtggccctgcgcgtgccggaggccgccgcccc 179

                                                                       
Query: 262 -ggcccggccgtgctggtgaagaacctctacctctcctgcgacccctacatgcgcggccg 320
            | |||||| || || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 180 cgccccggcggtcctcgtgaagaatctctacctctcctgcgacccctacatgcgcggccg 239

                                                                       
Query: 321 gatgcgggacttccacggctcctacatccctccgttcaagcccggatctgttatagaagg 380
           |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 240 gatgcgggacttccacggatcctacatcccgccgttcaagcccggatccgttattgaagg 299

                                                                       
Query: 381 gctgggcgtggcgagagtggtggactccactcatccggggttcgtcgccggcgacattgt 440
           ||| || ||||||||||||||||| ||||| |||||||| |||  ||| |||||||||||
Sbjct: 300 gcttggagtggcgagagtggtggattccacccatccgggattcagcgcgggcgacattgt 359

                                                     
Query: 441 ttcgggaatgactggctgggagg-atacagcctgattgacag 481
            || || |||||||| ||||||| |||||| ||||| |||||
Sbjct: 360 ctccgggatgactggttgggaggaatacagtctgatcgacag 401

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>dbj|AK063674.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-D10, full
           insert sequence
          Length = 1232

 Score =  305 bits (154), Expect = 8e-80
 Identities = 297/342 (86%), Gaps = 7/342 (2%)
 Strand = Plus / Plus

                                                                       
Query: 147 ggcgaggaaccggaaggtggtgctgcgggagtacatca---gccgcgcgccgagggagga 203
           |||||||||| |||||||||||||||| |||||||||    ||||  |||||||||||||
Sbjct: 93  ggcgaggaacaggaaggtggtgctgcgcgagtacatcgccggccggccgccgagggagga 152

                                                                       
Query: 204 cgacatgtcgctcgtcgacgggggcgccgtgccgctgcgcgtccccgagggcgccgcc-- 261
           |||||||  |||||||||||| ||| | ||| | |||||||| || |||| |||||||  
Sbjct: 153 cgacatggtgctcgtcgacggcggcacggtggccctgcgcgtgccggaggccgccgcccc 212

                                                                       
Query: 262 -ggcccggccgtgctggtgaagaacctctacctctcctgcgacccctacatgcgcggccg 320
            | |||||| || || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 213 cgccccggcggtcctcgtgaagaatctctacctctcctgcgacccctacatgcgcggccg 272

                                                                       
Query: 321 gatgcgggacttccacggctcctacatccctccgttcaagcccggatctgttatagaagg 380
           |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 273 gatgcgggacttccacggatcctacatcccgccgttcaagcccggatccgttattgaagg 332

                                                                       
Query: 381 gctgggcgtggcgagagtggtggactccactcatccggggttcgtcgccggcgacattgt 440
           ||| || ||||||||||||||||| ||||| |||||||| |||  ||| |||||||||||
Sbjct: 333 gcttggagtggcgagagtggtggattccacccatccgggattcagcgcgggcgacattgt 392

                                                     
Query: 441 ttcgggaatgactggctgggagg-atacagcctgattgacag 481
            || || |||||||| ||||||| |||||| ||||| |||||
Sbjct: 393 ctccgggatgactggttgggaggaatacagtctgatcgacag 434

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  222 bits (112), Expect = 9e-55
 Identities = 200/228 (87%), Gaps = 6/228 (2%)
 Strand = Plus / Plus

                                                                            
Query: 147      ggcgaggaaccggaaggtggtgctgcgggagtacatca---gccgcgcgccgagggagga 203
                |||||||||| |||||||||||||||| |||||||||    ||||  |||||||||||||
Sbjct: 38745966 ggcgaggaacaggaaggtggtgctgcgcgagtacatcgccggccggccgccgagggagga 38746025

                                                                            
Query: 204      cgacatgtcgctcgtcgacgggggcgccgtgccgctgcgcgtccccgagggcgccgcc-- 261
                |||||||  |||||||||||| ||| | ||| | |||||||| || |||| |||||||  
Sbjct: 38746026 cgacatggtgctcgtcgacggcggcacggtggccctgcgcgtgccggaggccgccgcccc 38746085

                                                                            
Query: 262      -ggcccggccgtgctggtgaagaacctctacctctcctgcgacccctacatgcgcggccg 320
                 | |||||| || || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 38746086 cgccccggcggtcctcgtgaagaatctctacctctcctgcgacccctacatgcgcggccg 38746145

                                                                
Query: 321      gatgcgggacttccacggctcctacatccctccgttcaagcccggatc 368
                |||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 38746146 gatgcgggacttccacggatcctacatcccgccgttcaagcccggatc 38746193



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 97/113 (85%), Gaps = 1/113 (0%)
 Strand = Plus / Plus

                                                                            
Query: 370      gttatagaagggctgggcgtggcgagagtggtggactccactcatccggggttcgtcgcc 429
                ||||| |||||||| || ||||||||||||||||| ||||| |||||||| |||  ||| 
Sbjct: 38746303 gttattgaagggcttggagtggcgagagtggtggattccacccatccgggattcagcgcg 38746362

                                                                     
Query: 430      ggcgacattgtttcgggaatgactggctgggagg-atacagcctgattgacag 481
                ||||||||||| || || |||||||| ||||||| |||||| ||||| |||||
Sbjct: 38746363 ggcgacattgtctccgggatgactggttgggaggaatacagtctgatcgacag 38746415

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>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1078G07
          Length = 199457

 Score =  222 bits (112), Expect = 9e-55
 Identities = 200/228 (87%), Gaps = 6/228 (2%)
 Strand = Plus / Plus

                                                                         
Query: 147   ggcgaggaaccggaaggtggtgctgcgggagtacatca---gccgcgcgccgagggagga 203
             |||||||||| |||||||||||||||| |||||||||    ||||  |||||||||||||
Sbjct: 18848 ggcgaggaacaggaaggtggtgctgcgcgagtacatcgccggccggccgccgagggagga 18907

                                                                         
Query: 204   cgacatgtcgctcgtcgacgggggcgccgtgccgctgcgcgtccccgagggcgccgcc-- 261
             |||||||  |||||||||||| ||| | ||| | |||||||| || |||| |||||||  
Sbjct: 18908 cgacatggtgctcgtcgacggcggcacggtggccctgcgcgtgccggaggccgccgcccc 18967

                                                                         
Query: 262   -ggcccggccgtgctggtgaagaacctctacctctcctgcgacccctacatgcgcggccg 320
              | |||||| || || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 18968 cgccccggcggtcctcgtgaagaatctctacctctcctgcgacccctacatgcgcggccg 19027

                                                             
Query: 321   gatgcgggacttccacggctcctacatccctccgttcaagcccggatc 368
             |||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 19028 gatgcgggacttccacggatcctacatcccgccgttcaagcccggatc 19075



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 97/113 (85%), Gaps = 1/113 (0%)
 Strand = Plus / Plus

                                                                         
Query: 370   gttatagaagggctgggcgtggcgagagtggtggactccactcatccggggttcgtcgcc 429
             ||||| |||||||| || ||||||||||||||||| ||||| |||||||| |||  ||| 
Sbjct: 19185 gttattgaagggcttggagtggcgagagtggtggattccacccatccgggattcagcgcg 19244

                                                                  
Query: 430   ggcgacattgtttcgggaatgactggctgggagg-atacagcctgattgacag 481
             ||||||||||| || || |||||||| ||||||| |||||| ||||| |||||
Sbjct: 19245 ggcgacattgtctccgggatgactggttgggaggaatacagtctgatcgacag 19297

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>gb|AY904340.1| Hordeum vulgare subsp. vulgare 2-alkenal reductase (ALH) gene,
           complete cds
          Length = 1864

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                    
Query: 268 gccgtgctggtgaagaacctctacctctcctgcgacccctacatgcgcggccggatg 324
           |||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 133 gccgtggtggtcaagaacctctacctctcctgcgacccctacatgcgcagccggatg 189

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>ref|XM_473036.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1038

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                
Query: 268 gccgtgctggtgaagaacctctacctctcctgcgacccctacatgcgcggccg 320
           ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 127 gccgtcctcgtgaagaacctgtacctgtcctgcgacccctacatgcgcggccg 179

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                     
Query: 268      gccgtgctggtgaagaacctctacctctcctgcgacccctacatgcgcggccg 320
                ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 24834661 gccgtcctcgtgaagaacctgtacctgtcctgcgacccctacatgcgcggccg 24834609

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>dbj|AK109382.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-F02, full
           insert sequence
          Length = 1343

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                
Query: 268 gccgtgctggtgaagaacctctacctctcctgcgacccctacatgcgcggccg 320
           ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 235 gccgtcctcgtgaagaacctgtacctgtcctgcgacccctacatgcgcggccg 287

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>dbj|AK069136.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008C06, full
           insert sequence
          Length = 1269

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                
Query: 268 gccgtgctggtgaagaacctctacctctcctgcgacccctacatgcgcggccg 320
           ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 173 gccgtcctcgtgaagaacctgtacctgtcctgcgacccctacatgcgcggccg 225

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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
             complete sequence
          Length = 170765

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                  
Query: 268   gccgtgctggtgaagaacctctacctctcctgcgacccctacatgcgcggccg 320
             ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 96377 gccgtcctcgtgaagaacctgtacctgtcctgcgacccctacatgcgcggccg 96325

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                 
Query: 275     tggtgaagaacctctacctctcctgcgacccctacatgcgcggccggatg 324
               ||||||||||||| ||| |||| || ||||| |||||||| |||||||||
Sbjct: 6869230 tggtgaagaacctgtacgtctcgtgtgacccttacatgcgtggccggatg 6869279



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                 
Query: 275     tggtgaagaacctctacctctcctgcgacccctacatgcgcggccggatg 324
               ||||||||||||| ||  |||||||||| || |||||||||  |||||||
Sbjct: 6915435 tggtgaagaacctgtatgtctcctgcgatccttacatgcgcaaccggatg 6915484



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                       
Query: 275     tggtgaagaacctctacctctcctgcgacccctacatgcg 314
               |||| |||||||| ||  |||| |||||||||||||||||
Sbjct: 6931814 tggtcaagaacctgtatatctcatgcgacccctacatgcg 6931853

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                 
Query: 275     tggtgaagaacctctacctctcctgcgacccctacatgcgcggccggatg 324
               ||||||||||||| ||| |||| || ||||| |||||||| |||||||||
Sbjct: 6869109 tggtgaagaacctgtacgtctcgtgtgacccttacatgcgtggccggatg 6869158



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                 
Query: 275     tggtgaagaacctctacctctcctgcgacccctacatgcgcggccggatg 324
               ||||||||||||| ||  |||||||||| || |||||||||  |||||||
Sbjct: 6915314 tggtgaagaacctgtatgtctcctgcgatccttacatgcgcaaccggatg 6915363



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                       
Query: 275     tggtgaagaacctctacctctcctgcgacccctacatgcg 314
               |||| |||||||| ||  |||| |||||||||||||||||
Sbjct: 6931693 tggtcaagaacctgtatatctcatgcgacccctacatgcg 6931732

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>emb|AL731740.4|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb0001P19 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144563

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 275   tggtgaagaacctctacctctcctgcgacccctacatgcgcggccggatg 324
             ||||||||||||| ||| |||| || ||||| |||||||| |||||||||
Sbjct: 92808 tggtgaagaacctgtacgtctcgtgtgacccttacatgcgtggccggatg 92759



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 275   tggtgaagaacctctacctctcctgcgacccctacatgcgcggccggatg 324
             ||||||||||||| ||  |||||||||| || |||||||||  |||||||
Sbjct: 46603 tggtgaagaacctgtatgtctcctgcgatccttacatgcgcaaccggatg 46554



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 275   tggtgaagaacctctacctctcctgcgacccctacatgcg 314
             |||| |||||||| ||  |||| |||||||||||||||||
Sbjct: 30224 tggtcaagaacctgtatatctcatgcgacccctacatgcg 30185

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>gb|AE005023.1| Halobacterium sp. NRC-1 section 54 of 170 of the complete genome
          Length = 11020

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 300  cgacccctacatgcgcggccggatgcgggact 331
            |||||| ||||||||||| |||||||||||||
Sbjct: 4729 cgacccgtacatgcgcggtcggatgcgggact 4760

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>gb|AY109926.1| Zea mays CL32876_1 mRNA sequence
          Length = 1053

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 397  gtggtggactccactcatccggggttcgtcgccggcgacattgtttcgggaatgactggc 456
            ||||| |||||||||||||| || |||   ||||| ||| ||||||| || |||||||| 
Sbjct: 1033 gtggtcgactccactcatccaggattcagtgccggtgacgttgtttccgggatgactgga 974

                    
Query: 457  tgggagga 464
            ||||||||
Sbjct: 973  tgggagga 966

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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 271     gtgctggtgaagaacctctacctctcctgcgacccctacatgcgcgg 317
               |||||| |||||| ||||||||| |||   |||||||||||||||||
Sbjct: 2127418 gtgctgttgaagaccctctacctgtccctggacccctacatgcgcgg 2127464

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>gb|DQ213100.1| Taeniopygia guttata clone 0058P0015F04 MGC75753-like mRNA, complete
           sequence
          Length = 1368

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 133 ccgccggcggggtcggcgagga 154
           ||||||||||||||||||||||
Sbjct: 323 ccgccggcggggtcggcgagga 344

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>gb|AC142212.4| Mus musculus BAC clone RP24-491O6 from chromosome 6, complete sequence
          Length = 146321

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 465    tacagcctgattgacagcctgacagc 490
              ||||||||||| ||||||||||||||
Sbjct: 144474 tacagcctgatggacagcctgacagc 144499

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>gb|AC125121.4| Mus musculus BAC clone RP24-267O4 from chromosome 6, complete sequence
          Length = 162573

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 465   tacagcctgattgacagcctgacagc 490
             ||||||||||| ||||||||||||||
Sbjct: 34860 tacagcctgatggacagcctgacagc 34885

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>gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0023F01, complete sequence
          Length = 145009

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 64    cggcgagctccgttccctccac 85
             ||||||||||||||||||||||
Sbjct: 76213 cggcgagctccgttccctccac 76234

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 64       cggcgagctccgttccctccac 85
                ||||||||||||||||||||||
Sbjct: 26513507 cggcgagctccgttccctccac 26513486

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>dbj|AK104386.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-E06, full
           insert sequence
          Length = 1268

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 275 tggtgaagaacctctacctctcctgcgacccctacatgcgcggccggatg 324
           ||||||||||||| ||  |||||||||| || |||||||||  |||||||
Sbjct: 226 tggtgaagaacctgtatgtctcctgcgatccttacatgcgcaaccggatg 275

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>dbj|AK071631.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105O06, full
           insert sequence
          Length = 1270

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 275 tggtgaagaacctctacctctcctgcgacccctacatgcgcggccggatg 324
           ||||||||||||| ||  |||||||||| || |||||||||  |||||||
Sbjct: 231 tggtgaagaacctgtatgtctcctgcgatccttacatgcgcaaccggatg 280

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>dbj|AK060453.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-G06, full
           insert sequence
          Length = 1335

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 275 tggtgaagaacctctacctctcctgcgacccctacatgcgcggccggatg 324
           ||||||||||||| ||  |||||||||| || |||||||||  |||||||
Sbjct: 228 tggtgaagaacctgtatgtctcctgcgatccttacatgcgcaaccggatg 277

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 64       cggcgagctccgttccctccac 85
                ||||||||||||||||||||||
Sbjct: 26838771 cggcgagctccgttccctccac 26838750

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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 300     cgacccctacatgcgcggccggatg 324
               |||||| ||||||||||||||||||
Sbjct: 1827979 cgacccgtacatgcgcggccggatg 1827955

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>ref|XM_584500.2| PREDICTED: Bos taurus similar to NAD-dependent malic enzyme,
           mitochondrial precursor (NAD-ME) (Malic enzyme 2)
           (LOC507817), partial mRNA
          Length = 1539

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 62  ctcggcgagctccgttccctccacc 86
           ||||||||||||| |||||||||||
Sbjct: 111 ctcggcgagctcctttccctccacc 87

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>ref|XM_844550.1| PREDICTED: Canis familiaris similar to nNOS-intereacting
           DHHC-containing Dem protein-L (LOC607759), mRNA
          Length = 1284

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 183 cagccgcgcgccgagggagga 203
           |||||||||||||||||||||
Sbjct: 678 cagccgcgcgccgagggagga 698

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>gb|AE005875.1| Caulobacter crescentus CB15 section 201 of 359 of the complete
           genome
          Length = 12929

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 300 cgacccctacatgcgcggccg 320
           |||||||||||||||||||||
Sbjct: 227 cgacccctacatgcgcggccg 247

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>emb|AJ315120.1|CIN315120 Canthium inerme internal transcribed spacer 1 (ITS1), 5.8S rRNA
           gene and internal transcribed spacer 2 (ITS2)
          Length = 625

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 188 gcgcgccgagggaggacgaca 208
           |||||||||||||||||||||
Sbjct: 106 gcgcgccgagggaggacgaca 86

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>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome
          Length = 150715

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 246   ccccgagggcgccgccggcccggc 269
             |||| |||||||||||||||||||
Sbjct: 18978 cccccagggcgccgccggcccggc 18955

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>gb|AE017353.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 13, complete
              sequence
          Length = 787999

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 437    ttgtttcgggaatgactggctggg 460
              |||||||| |||||||||||||||
Sbjct: 421661 ttgtttcgtgaatgactggctggg 421684

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>ref|XM_592838.2| PREDICTED: Bos taurus similar to Kelch repeat and BTB domain
           containing protein 2 (BTB and kelch domain containing
           protein 1) (LOC514920), mRNA
          Length = 3595

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 486 acagctgaacagatcagcaa 505
           ||||||||||||||||||||
Sbjct: 998 acagctgaacagatcagcaa 979

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>emb|AJ617750.1| Canthium ciliatum ITS1, 5.8s rRNA gene and ITS2, specimen voucher
           Bremer et al. 4345 (UPS)
          Length = 623

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 188 gcgcgccgagggaggacgac 207
           ||||||||||||||||||||
Sbjct: 104 gcgcgccgagggaggacgac 85

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>ref|XM_568348.1| Cryptococcus neoformans var. neoformans JEC21 alpha DNA polymerase
           (CNM01440) partial mRNA
          Length = 2298

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 437 ttgtttcgggaatgactggctggg 460
           |||||||| |||||||||||||||
Sbjct: 774 ttgtttcgtgaatgactggctggg 751

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>ref|XM_773580.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_158_75658_74735) partial mRNA
          Length = 924

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   tacctaaacatcggcgactc 22
           ||||||||||||||||||||
Sbjct: 670 tacctaaacatcggcgactc 689

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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 376    gaagggctgggcgtggcgag 395
              ||||||||||||||||||||
Sbjct: 624793 gaagggctgggcgtggcgag 624812

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>dbj|AK144253.1| Mus musculus 16 days neonate male diencephalon cDNA, RIKEN
           full-length enriched library, clone:G630001I22
           product:calcium channel, voltage-dependent, gamma
           subunit 4, full insert sequence
          Length = 882

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 184 agccgcgcgccgagggagga 203
           ||||||||||||||||||||
Sbjct: 156 agccgcgcgccgagggagga 175

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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 127    gcgagcccgccggcggggtcggcgagga 154
              |||||||||||||||||| |||| ||||
Sbjct: 518536 gcgagcccgccggcgggggcggcaagga 518509

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>emb|X07567.2|RCNIFAB Rhodobacter capsulatus nifA1, nifB1, nifZ genes and ORF1
          Length = 4639

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 228 cgccgtgccgctgcgcgtccccga 251
           ||||||||||||||||| ||||||
Sbjct: 665 cgccgtgccgctgcgcgaccccga 688

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>gb|AF033203.1|AF033203 Rhodobacter capsulatus NifAII protein (nifAII) gene, complete cds
          Length = 1889

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 228 cgccgtgccgctgcgcgtccccga 251
           ||||||||||||||||| ||||||
Sbjct: 563 cgccgtgccgctgcgcgaccccga 586

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>emb|AL645853.12| Mouse DNA sequence from clone RP23-329L1 on chromosome 11, complete
             sequence
          Length = 94538

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   agccgcgcgccgagggagga 203
             ||||||||||||||||||||
Sbjct: 34812 agccgcgcgccgagggagga 34793


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,254,800
Number of Sequences: 3902068
Number of extensions: 3254800
Number of successful extensions: 64103
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63509
Number of HSP's gapped (non-prelim): 584
length of query: 514
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 491
effective length of database: 17,143,297,704
effective search space: 8417359172664
effective search space used: 8417359172664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result