ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast64h03 |
|---|---|
| Clone Library Name | barley_pub |
>TAF9B_HUMAN (Q9HBM6) Transcription initiation factor TFIID subunit 9B| (Transcription initiation factor TFIID subunit 9-like protein) (Transcription-associated factor TAFII31L) (Neuronal cell death-related protein 7) (DN-7) Length = 251 Score = 105 bits (262), Expect = 4e-23 Identities = 48/90 (53%), Positives = 69/90 (76%) Frame = +1 Query: 151 PRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADD 330 PRDA V+ ++L+ MG+ E YEPRV++Q L+ A+RY +L DA++Y+ HA KP +DADD Sbjct: 13 PRDALVMAQILKDMGITE--YEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADD 70 Query: 331 VRLAIQAKVNFSFSQPPPREVLLELARSRN 420 VRLAIQ + + SF+ PPPR+ LL++AR +N Sbjct: 71 VRLAIQCRADQSFTSPPPRDFLLDIARQKN 100
>TAF9_RAT (Q5BKE0) Transcription initiation factor TFIID subunit 9| (Transcription initiation factor TFIID 31 kDa subunit) (TAFII-31) (TAFII-32) (TAFII32) Length = 264 Score = 105 bits (261), Expect = 6e-23 Identities = 47/90 (52%), Positives = 70/90 (77%) Frame = +1 Query: 151 PRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADD 330 P+DA+++ ++L+ MG+ E YEPRV++Q L+ A+RY +L DA++Y+ HA KP +DADD Sbjct: 13 PKDAQMMAQILKDMGITE--YEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADD 70 Query: 331 VRLAIQAKVNFSFSQPPPREVLLELARSRN 420 VRLAIQ + + SF+ PPPR+ LL++AR RN Sbjct: 71 VRLAIQCRADQSFTSPPPRDFLLDIARQRN 100
>TAF9B_MOUSE (Q6NZA9) Transcription initiation factor TFIID subunit 9B| (Transcription initiation factor TFIID subunit 9-like protein) (Transcription-associated factor TAFII31L) Length = 249 Score = 105 bits (261), Expect = 6e-23 Identities = 48/90 (53%), Positives = 69/90 (76%) Frame = +1 Query: 151 PRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADD 330 PRDA V+ ++L+ MG+ E YEPRV++Q L+ A+RY +L DA++Y+ HA KP +DADD Sbjct: 13 PRDALVMAQILKDMGITE--YEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADD 70 Query: 331 VRLAIQAKVNFSFSQPPPREVLLELARSRN 420 VRLAIQ + + SF+ PPPR+ LL++AR +N Sbjct: 71 VRLAIQCRADQSFTSPPPRDFLLDIARQKN 100
>TAF9B_RAT (Q62880) Transcription initiation factor TFIID subunit 9B| (Transcription initiation factor TFIID subunit 9-like protein) (Transcription-associated factor TAFII31L) (Neuronal cell death-related gene in neuron 7) (DN-7) Length = 258 Score = 103 bits (258), Expect = 1e-22 Identities = 47/90 (52%), Positives = 69/90 (76%) Frame = +1 Query: 151 PRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADD 330 PRDA V+ ++L+ MG+ + YEPRV++Q L+ A+RY +L DA++Y+ HA KP +DADD Sbjct: 13 PRDALVMAQILKDMGITD--YEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADD 70 Query: 331 VRLAIQAKVNFSFSQPPPREVLLELARSRN 420 VRLAIQ + + SF+ PPPR+ LL++AR +N Sbjct: 71 VRLAIQCRADQSFTSPPPRDFLLDIARQKN 100
>TAF9_MOUSE (Q8VI33) Transcription initiation factor TFIID subunit 9| (Transcription initiation factor TFIID 31 kDa subunit) (TAFII-31) (TAFII-32) (TAFII32) Length = 264 Score = 102 bits (253), Expect = 5e-22 Identities = 46/90 (51%), Positives = 69/90 (76%) Frame = +1 Query: 151 PRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADD 330 P+DA+++ ++L+ MG+ E YEPRV++Q L+ A+RY +L DA++Y+ HA K +DADD Sbjct: 13 PKDAQMMAQILKDMGITE--YEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADD 70 Query: 331 VRLAIQAKVNFSFSQPPPREVLLELARSRN 420 VRLAIQ + + SF+ PPPR+ LL++AR RN Sbjct: 71 VRLAIQCRADQSFTSPPPRDFLLDIARQRN 100
>TAF9_HUMAN (Q16594) Transcription initiation factor TFIID subunit 9| (Transcription initiation factor TFIID 31 kDa subunit) (TAFII-31) (TAFII-32) (TAFII32) (STAF31/32) Length = 264 Score = 102 bits (253), Expect = 5e-22 Identities = 46/90 (51%), Positives = 69/90 (76%) Frame = +1 Query: 151 PRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADD 330 P+DA+++ ++L+ MG+ E YEPRV++Q L+ A+RY +L DA++Y+ HA K +DADD Sbjct: 13 PKDAQMMAQILKDMGITE--YEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADD 70 Query: 331 VRLAIQAKVNFSFSQPPPREVLLELARSRN 420 VRLAIQ + + SF+ PPPR+ LL++AR RN Sbjct: 71 VRLAIQCRADQSFTSPPPRDFLLDIARQRN 100
>TAF9_DROME (Q27272) Transcription initiation factor TFIID subunit 9| (Transcription initiation factor TFIID 42 kDa subunit) (TAFII-42) (TAFII40) (p42) (Protein enhancer of yellow 1) Length = 278 Score = 81.3 bits (199), Expect = 9e-16 Identities = 41/90 (45%), Positives = 61/90 (67%) Frame = +1 Query: 151 PRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADD 330 P+DA+V+ +L+ + + E YEPRVV+Q L+ +RY +L DA+VYA+HA K +D DD Sbjct: 19 PKDAQVIMSILKELNVQE--YEPRVVNQLLEFTFRYVTCILDDAKVYANHARKKTIDLDD 76 Query: 331 VRLAIQAKVNFSFSQPPPREVLLELARSRN 420 VRLA + ++ SF+ P R VL ++A RN Sbjct: 77 VRLATEVTLDKSFTGPLERHVLAKVADVRN 106
>TAF9_SCHPO (Q09869) Transcription initiation factor TFIID subunit 9| (TBP-associated factor 9) Length = 163 Score = 73.9 bits (180), Expect = 1e-13 Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 2/92 (2%) Frame = +1 Query: 151 PRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAG--KPQLDA 324 P+D R++ +L S+G+ Y V Q L A+RY ++ D+QVYA+H+ + Sbjct: 14 PKDVRLIHLILSSLGVPS--YSQTVPLQLLTFAHRYTQQLIQDSQVYAEHSRGQNAPISV 71 Query: 325 DDVRLAIQAKVNFSFSQPPPREVLLELARSRN 420 +DVRLA+ +++N SF+ PPP+E LLELA RN Sbjct: 72 EDVRLAVASQINHSFTGPPPKEFLLELAMERN 103
>TAF9_YEAST (Q05027) Transcription initiation factor TFIID subunit 9| (TBP-associated factor 9) (TBP-associated factor 17 kDa) (TAFII-17) (TAFII20) Length = 157 Score = 69.3 bits (168), Expect = 3e-12 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 5/97 (5%) Frame = +1 Query: 145 DEPRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQ--- 315 + PRD R++ LL S + + YE +V Q +D A+RY VL DA VY D+AG Sbjct: 28 ETPRDVRLLHLLLASQSIHQ--YEDQVPLQLMDFAHRYTQGVLKDALVYNDYAGSGNSAG 85 Query: 316 --LDADDVRLAIQAKVNFSFSQPPPREVLLELARSRN 420 L +D+RLAI A+ + F P+E++L+LA RN Sbjct: 86 SGLGVEDIRLAIAARTQYQFKPTAPKELMLQLAAERN 122
>YO086_YEAST (Q3E835) Uncharacterized protein YOL086W-A| Length = 90 Score = 39.7 bits (91), Expect = 0.003 Identities = 19/62 (30%), Positives = 35/62 (56%) Frame = +1 Query: 163 RVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADDVRLA 342 RV L + + + +Y PR ++ L+LAY G++ D Q +A HAG+ ++ D+ L Sbjct: 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLY 76 Query: 343 IQ 348 ++ Sbjct: 77 LR 78
>TAF12_YEAST (Q03761) Transcription initiation factor TFIID subunit 12| (TBP-associated factor 12) (TBP-associated factor 61 kDa) (TAFII-61) (TAFII61) (TAFII-68) (TAFII68) Length = 539 Score = 31.2 bits (69), Expect = 1.0 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Frame = +1 Query: 163 RVVRELLRSMGLGEGEYEP----RVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADD 330 R +REL++++G+ EG+ E V LDLA + +V + A H L+A D Sbjct: 418 RKLRELVKTVGIDEGDGETVIDGDVEELLLDLADDFVTNVTAFSCRLAKHRKSDNLEARD 477 Query: 331 VRLAIQAKVN 360 ++L ++ N Sbjct: 478 IQLHLERNWN 487
>SPEA_YERPE (Q8ZHG8) Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ADC)| Length = 659 Score = 30.4 bits (67), Expect = 1.8 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%) Frame = +1 Query: 148 EPRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYAGD-----VLGDAQVYAD---HA 303 EP + R +RE L + + + H LDL +R + + + Q D A Sbjct: 411 EPENRRSLREWLHDSQMDLHDVHTQYAHGMLDLTHRAWAEQLYLSICNEIQKQLDPSNRA 470 Query: 304 GKPQLDADDVRLAIQAKVNFSFSQPPP 384 +P +D R+A + VNFS Q P Sbjct: 471 HRPIIDELQERMADKLYVNFSLFQSMP 497
>HARA_PYRSG (P50485) Archaeal histone A (Archaeal histone A1)| Length = 67 Score = 30.4 bits (67), Expect = 1.8 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +1 Query: 169 VRELLRSMGLGE-GEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADDVRLAI 345 V L+R G E +++ ++L+ YA +V A +A HAG+ + A+D++LAI Sbjct: 9 VDRLIRKAGAERVSEEAAKILAEYLE---EYAIEVSKKAVEFARHAGRKTVKAEDIKLAI 65 Query: 346 QA 351 ++ Sbjct: 66 KS 67
>HANA_THEZI (P95669) Archaeal histone HAN1 subunit A| Length = 66 Score = 30.4 bits (67), Expect = 1.8 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = +1 Query: 256 YAGDVLGDAQVYADHAGKPQLDADDVRLAIQA 351 YA +V A +A HAG+ + A+DVRLA++A Sbjct: 35 YAIEVGKKATEFARHAGRKTVKAEDVRLAVKA 66
>HARA_PYRKO (Q9Y8I1) Archaeal histone A (Archaeal histone A1)| Length = 67 Score = 30.0 bits (66), Expect = 2.3 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +1 Query: 169 VRELLRSMGLGE-GEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADDVRLAI 345 V L+R G E +V+ ++L+ YA ++ A +A HAG+ + A+D++LAI Sbjct: 9 VDRLIRKAGAERVSEDAAKVLAEYLE---EYAIELSKKAVDFARHAGRKTVKAEDIKLAI 65 Query: 346 QA 351 +A Sbjct: 66 KA 67
>HARA_PYRFU (P61882) Archaeal histone A (Archaeal histone A1)| Length = 67 Score = 30.0 bits (66), Expect = 2.3 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Frame = +1 Query: 169 VRELLRSMGLGE-GEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADDVRLAI 345 V L+R G E +V+ ++L+ YA +V A +A HAG+ + +D++LAI Sbjct: 9 VDRLIRKAGAERVSEQAAKVLAEYLE---EYAIEVAKKAVEFARHAGRKTVKVEDIKLAI 65 Query: 346 QA 351 ++ Sbjct: 66 KS 67
>HARA_PYRAB (P61881) Archaeal histone A (Archaeal histone A1)| Length = 67 Score = 30.0 bits (66), Expect = 2.3 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Frame = +1 Query: 169 VRELLRSMGLGE-GEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADDVRLAI 345 V L+R G E +V+ ++L+ YA +V A +A HAG+ + +D++LAI Sbjct: 9 VDRLIRKAGAERVSEQAAKVLAEYLE---EYAIEVAKKAVEFARHAGRKTVKVEDIKLAI 65 Query: 346 QA 351 ++ Sbjct: 66 KS 67
>HARA_PYRHO (O74098) Archaeal histone A (Archaeal histone A1)| Length = 67 Score = 29.6 bits (65), Expect = 3.0 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Frame = +1 Query: 169 VRELLRSMGLGE-GEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADDVRLAI 345 V L+R G E +V+ ++L+ YA ++ A +A HAG+ + +D++LAI Sbjct: 9 VDRLIRKAGAERVSEQAAKVLAEYLE---EYAIEIAKKAVEFARHAGRKTVKVEDIKLAI 65 Query: 346 QA 351 ++ Sbjct: 66 KS 67
>TOP1_ZYMMO (Q9X3X7) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 1217 Score = 29.3 bits (64), Expect = 3.9 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 6/69 (8%) Frame = +1 Query: 199 GEGEYEPRVVHQ------FLDLAYRYAGDVLGDAQVYADHAGKPQLDADDVRLAIQAKVN 360 G G+ RV Q FL L A D D A P L A D L + + + Sbjct: 394 GTGQNVLRVTGQVVLFSGFLTLYEESADDNANDRDGKEGRARLPLLRAGDAPLKKEVRAD 453 Query: 361 FSFSQPPPR 387 F+QPPPR Sbjct: 454 QHFTQPPPR 462
>KGUA_GLOVI (Q7NK59) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 205 Score = 29.3 bits (64), Expect = 3.9 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 5/43 (11%) Frame = +1 Query: 304 GKPQLDADDVRLAIQAKVNFS-----FSQPPPREVLLELARSR 417 G+P + DV+ A+Q K NF F +PP EVL E RSR Sbjct: 107 GEPVVLEIDVQGALQVKNNFPAAMLVFIRPPSLEVLAERLRSR 149
>YB35_SCHPO (O14340) Oxysterol-binding protein homolog C2F12.05c| Length = 1310 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +1 Query: 298 HAGKPQLDADDVRLAIQAKVNFSFSQPPPREVL 396 HA KP LD ++LA Q V+F + P RE L Sbjct: 895 HASKPSLDEKTMQLAKQIAVSFHGYEAPTRENL 927
>DTD_NEIMB (Q9K143) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 163 Score = 28.5 bits (62), Expect = 6.7 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 12/73 (16%) Frame = +1 Query: 223 VVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADDVRLAIQAKVNF------------S 366 V H + RY D + +V+ D AGK L DV A+ F S Sbjct: 37 VTHSDTEKDARYIADKIAHLRVFEDEAGKLNLSLKDVGGAVLLVSQFTLYADAASGRRPS 96 Query: 367 FSQPPPREVLLEL 405 FSQ P E +L Sbjct: 97 FSQAAPAEQAQQL 109
>PHNC_SHIFL (Q83P97) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)| Length = 262 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = +1 Query: 148 EPRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQL 318 +P AR+V + LR + +G +HQ +D A RY ++ Q + + G QL Sbjct: 184 DPESARIVMDTLRDINQNDGITVVVTLHQ-VDYALRYCERIVALRQGHVFYDGSSQL 239
>HAS1_GIBZE (Q4IEK8) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)| Length = 590 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = +1 Query: 289 YADHAGKPQLDADDVRLAIQAKVNFSFSQPPPREVLLELARSRN 420 YA H+ + D + + LA AK +F F+QPP ++ L + SR+ Sbjct: 526 YASHSLRSVFDINKLDLAKVAK-SFGFTQPPRVDITLGASMSRD 568
>DTD_NEIG1 (Q5F6A6) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 163 Score = 28.1 bits (61), Expect = 8.8 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 12/68 (17%) Frame = +1 Query: 223 VVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADDVRLAIQAKVNF------------S 366 V H + RY D + +V+ D AGK L DV A+ F S Sbjct: 37 VTHSDTEKDARYIADKIAHLRVFEDEAGKLNLSLKDVGGAVLLVSQFTLYADAASGRRPS 96 Query: 367 FSQPPPRE 390 FSQ P E Sbjct: 97 FSQAAPAE 104
>HPPD_HORVU (O48604) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 434 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/62 (25%), Positives = 31/62 (50%) Frame = +1 Query: 163 RVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADDVRLA 342 R +R++ +G ++ P + ++ + R AGDVL +AQ+ +D DD + Sbjct: 303 RTLRKMRARSAMGGFDFLPPPLPKYYEGVRRLAGDVLSEAQIKECQELGVLVDRDDQGVL 362 Query: 343 IQ 348 +Q Sbjct: 363 LQ 364
>MTBR_BACSU (P06530) Modification methylase BsuRI (EC 2.1.1.37)| (Cytosine-specific methyltransferase BsuRI) (M.BsuRI) Length = 436 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/65 (26%), Positives = 29/65 (44%) Frame = +1 Query: 190 MGLGEGEYEPRVVHQFLDLAYRYAGDVLGDAQVYADHAGKPQLDADDVRLAIQAKVNFSF 369 M LG+GE +++ F YR +L A G PQL + ++ ++F++ Sbjct: 200 MTLGKGEVLNQIIEDFASAGYRVQFKLLN-----ARDYGVPQLRERVIIEGVRKDISFNY 254 Query: 370 SQPPP 384 P P Sbjct: 255 KYPSP 259 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,632,656 Number of Sequences: 219361 Number of extensions: 429179 Number of successful extensions: 1694 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 1668 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1686 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
