ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast64h03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 377 bits (190), Expect = e-101 Identities = 235/250 (94%) Strand = Plus / Plus Query: 143 cggacgagccccgcgacgcgcgcgtggtgcgggagctgctccgctccatggggctcggcg 202 ||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| Sbjct: 16606649 cggacgagccccgcgacgcgcgcgtggtgcgggagctcctgcgctccatggggctgagcg 16606708 Query: 203 agggcgagtacgagccgcgcgtcgtgcaccagttcctcgacctcgcctaccgctacgccg 262 |||| |||||||||||||| || |||||||||||||||||||| ||||||||||||| || Sbjct: 16606709 agggggagtacgagccgcgggtggtgcaccagttcctcgacctggcctaccgctacgtcg 16606768 Query: 263 gggacgtgctcggcgacgcccaggtctacgccgaccacgccggcaagccccagctcgacg 322 | ||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 16606769 gcgacgtgctcggggacgcccaggtctacgccgaccacgcggggaagccccagcttgacg 16606828 Query: 323 ccgacgacgtccgcctcgccatccaggccaaggtcaacttctccttctcccagccgccgc 382 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 16606829 ccgacgacgtccgcctcgccatccagtccaaggtcaacttctccttctcccagccgccgc 16606888 Query: 383 cccgcgaggt 392 |||||||||| Sbjct: 16606889 cccgcgaggt 16606898
>gb|AC135559.4| Oryza sativa chromosome 3 BAC OSJNBa0030J19 genomic sequence, complete sequence Length = 133843 Score = 377 bits (190), Expect = e-101 Identities = 235/250 (94%) Strand = Plus / Minus Query: 143 cggacgagccccgcgacgcgcgcgtggtgcgggagctgctccgctccatggggctcggcg 202 ||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| Sbjct: 47394 cggacgagccccgcgacgcgcgcgtggtgcgggagctcctgcgctccatggggctgagcg 47335 Query: 203 agggcgagtacgagccgcgcgtcgtgcaccagttcctcgacctcgcctaccgctacgccg 262 |||| |||||||||||||| || |||||||||||||||||||| ||||||||||||| || Sbjct: 47334 agggggagtacgagccgcgggtggtgcaccagttcctcgacctggcctaccgctacgtcg 47275 Query: 263 gggacgtgctcggcgacgcccaggtctacgccgaccacgccggcaagccccagctcgacg 322 | ||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 47274 gcgacgtgctcggggacgcccaggtctacgccgaccacgcggggaagccccagcttgacg 47215 Query: 323 ccgacgacgtccgcctcgccatccaggccaaggtcaacttctccttctcccagccgccgc 382 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 47214 ccgacgacgtccgcctcgccatccagtccaaggtcaacttctccttctcccagccgccgc 47155 Query: 383 cccgcgaggt 392 |||||||||| Sbjct: 47154 cccgcgaggt 47145
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 377 bits (190), Expect = e-101 Identities = 235/250 (94%) Strand = Plus / Plus Query: 143 cggacgagccccgcgacgcgcgcgtggtgcgggagctgctccgctccatggggctcggcg 202 ||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| Sbjct: 16600282 cggacgagccccgcgacgcgcgcgtggtgcgggagctcctgcgctccatggggctgagcg 16600341 Query: 203 agggcgagtacgagccgcgcgtcgtgcaccagttcctcgacctcgcctaccgctacgccg 262 |||| |||||||||||||| || |||||||||||||||||||| ||||||||||||| || Sbjct: 16600342 agggggagtacgagccgcgggtggtgcaccagttcctcgacctggcctaccgctacgtcg 16600401 Query: 263 gggacgtgctcggcgacgcccaggtctacgccgaccacgccggcaagccccagctcgacg 322 | ||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 16600402 gcgacgtgctcggggacgcccaggtctacgccgaccacgcggggaagccccagcttgacg 16600461 Query: 323 ccgacgacgtccgcctcgccatccaggccaaggtcaacttctccttctcccagccgccgc 382 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 16600462 ccgacgacgtccgcctcgccatccagtccaaggtcaacttctccttctcccagccgccgc 16600521 Query: 383 cccgcgaggt 392 |||||||||| Sbjct: 16600522 cccgcgaggt 16600531
>ref|XM_468610.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1265 Score = 373 bits (188), Expect = e-100 Identities = 233/248 (93%) Strand = Plus / Plus Query: 143 cggacgagccccgcgacgcgcgcgtggtgcgggagctgctccgctccatggggctcggcg 202 ||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| Sbjct: 92 cggacgagccccgcgacgcgcgcgtggtgcgggagctcctgcgctccatggggctgagcg 151 Query: 203 agggcgagtacgagccgcgcgtcgtgcaccagttcctcgacctcgcctaccgctacgccg 262 |||| |||||||||||||| || |||||||||||||||||||| ||||||||||||| || Sbjct: 152 agggggagtacgagccgcgggtggtgcaccagttcctcgacctggcctaccgctacgtcg 211 Query: 263 gggacgtgctcggcgacgcccaggtctacgccgaccacgccggcaagccccagctcgacg 322 | ||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 212 gcgacgtgctcggggacgcccaggtctacgccgaccacgcggggaagccccagcttgacg 271 Query: 323 ccgacgacgtccgcctcgccatccaggccaaggtcaacttctccttctcccagccgccgc 382 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 272 ccgacgacgtccgcctcgccatccagtccaaggtcaacttctccttctcccagccgccgc 331 Query: 383 cccgcgag 390 |||||||| Sbjct: 332 cccgcgag 339
>gb|AY110973.1| Zea mays CL36418_1 mRNA sequence Length = 1132 Score = 139 bits (70), Expect = 8e-30 Identities = 106/118 (89%) Strand = Plus / Plus Query: 184 cgctccatggggctcggcgagggcgagtacgagccgcgcgtcgtgcaccagttcctcgac 243 ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 330 cgctcgatgggtctcggtgagggcgagtacgagccccgcgtcgtgcaccagttcctggac 389 Query: 244 ctcgcctaccgctacgccggggacgtgctcggcgacgcccaggtctacgccgaccacg 301 || |||||||| |||| ||| |||||||| || |||||||| |||||||||||||||| Sbjct: 390 ctggcctaccgatacgtcggagacgtgctaggggacgcccaagtctacgccgaccacg 447 Score = 127 bits (64), Expect = 3e-26 Identities = 85/92 (92%) Strand = Plus / Plus Query: 330 cgtccgcctcgccatccaggccaaggtcaacttctccttctcccagccgccgccccgcga 389 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || Sbjct: 476 cgtccgcctcgccatccaggccaaggtcaatttctccttctcccagccgccgccgcgtga 535 Query: 390 ggttctactcgagctggcacgcagccggaaca 421 |||||| || |||||||| |||||||| |||| Sbjct: 536 ggttctccttgagctggcccgcagccgaaaca 567
>ref|XM_479141.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1278 Score = 79.8 bits (40), Expect = 7e-12 Identities = 166/208 (79%) Strand = Plus / Plus Query: 145 gacgagccccgcgacgcgcgcgtggtgcgggagctgctccgctccatggggctcggcgag 204 |||||||| || ||| |||||||||||||||| | |||| ||| |||||||| | ||| Sbjct: 73 gacgagccgcgggacctgcgcgtggtgcgggagatcctccactcgctggggctccgggag 132 Query: 205 ggcgagtacgagccgcgcgtcgtgcaccagttcctcgacctcgcctaccgctacgccggg 264 || || |||||| | | ||||||| || |||| | ||||| ||||||||||||| Sbjct: 133 ggggactacgaggaggcggccgtgcacaagctcctgctcttcgcccaccgctacgccggc 192 Query: 265 gacgtgctcggcgacgcccaggtctacgccgaccacgccggcaagccccagctcgacgcc 324 |||||||||||||| || ||| ||||||| ||||||||| | | |||| | ||| Sbjct: 193 gacgtgctcggcgaggcgaaggcgtacgccggccacgccgggagggagtcgctccaggcc 252 Query: 325 gacgacgtccgcctcgccatccaggcca 352 |||||||||||||||||||||||||||| Sbjct: 253 gacgacgtccgcctcgccatccaggcca 280
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 79.8 bits (40), Expect = 7e-12 Identities = 166/208 (79%) Strand = Plus / Minus Query: 145 gacgagccccgcgacgcgcgcgtggtgcgggagctgctccgctccatggggctcggcgag 204 |||||||| || ||| |||||||||||||||| | |||| ||| |||||||| | ||| Sbjct: 25169401 gacgagccgcgggacctgcgcgtggtgcgggagatcctccactcgctggggctccgggag 25169342 Query: 205 ggcgagtacgagccgcgcgtcgtgcaccagttcctcgacctcgcctaccgctacgccggg 264 || || |||||| | | ||||||| || |||| | ||||| ||||||||||||| Sbjct: 25169341 ggggactacgaggaggcggccgtgcacaagctcctgctcttcgcccaccgctacgccggc 25169282 Query: 265 gacgtgctcggcgacgcccaggtctacgccgaccacgccggcaagccccagctcgacgcc 324 |||||||||||||| || ||| ||||||| ||||||||| | | |||| | ||| Sbjct: 25169281 gacgtgctcggcgaggcgaaggcgtacgccggccacgccgggagggagtcgctccaggcc 25169222 Query: 325 gacgacgtccgcctcgccatccaggcca 352 |||||||||||||||||||||||||||| Sbjct: 25169221 gacgacgtccgcctcgccatccaggcca 25169194 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 113 ccgcggcggccggaggaggggcggcg 138 ||||||||||||||||||| |||||| Sbjct: 25706320 ccgcggcggccggaggaggtgcggcg 25706295
>dbj|AP003700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1003_H02 Length = 124043 Score = 79.8 bits (40), Expect = 7e-12 Identities = 166/208 (79%) Strand = Plus / Minus Query: 145 gacgagccccgcgacgcgcgcgtggtgcgggagctgctccgctccatggggctcggcgag 204 |||||||| || ||| |||||||||||||||| | |||| ||| |||||||| | ||| Sbjct: 89888 gacgagccgcgggacctgcgcgtggtgcgggagatcctccactcgctggggctccgggag 89829 Query: 205 ggcgagtacgagccgcgcgtcgtgcaccagttcctcgacctcgcctaccgctacgccggg 264 || || |||||| | | ||||||| || |||| | ||||| ||||||||||||| Sbjct: 89828 ggggactacgaggaggcggccgtgcacaagctcctgctcttcgcccaccgctacgccggc 89769 Query: 265 gacgtgctcggcgacgcccaggtctacgccgaccacgccggcaagccccagctcgacgcc 324 |||||||||||||| || ||| ||||||| ||||||||| | | |||| | ||| Sbjct: 89768 gacgtgctcggcgaggcgaaggcgtacgccggccacgccgggagggagtcgctccaggcc 89709 Query: 325 gacgacgtccgcctcgccatccaggcca 352 |||||||||||||||||||||||||||| Sbjct: 89708 gacgacgtccgcctcgccatccaggcca 89681
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 313 cagctcgacgccgacgacgtccg 335 ||||||||||||||||||||||| Sbjct: 2472419 cagctcgacgccgacgacgtccg 2472397
>ref|XM_480022.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1572 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 315 gctcgacgccgacgacgtccgc 336 |||||||||||||||||||||| Sbjct: 72 gctcgacgccgacgacgtccgc 93
>ref|XM_479188.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1509 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 113 ccgcggcggccggaggaggggcggcg 138 ||||||||||||||||||| |||||| Sbjct: 720 ccgcggcggccggaggaggtgcggcg 745
>gb|BC081169.1| Xenopus laevis MGC84302 protein, mRNA (cDNA clone MGC:84302 IMAGE:6957158), complete cds Length = 3756 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 116 cggcggccggaggaggggcggcggga 141 ||||||| |||||||||||||||||| Sbjct: 274 cggcggcgggaggaggggcggcggga 249
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 314 agctcgacgccgacgacgtccg 335 |||||||||||||||||||||| Sbjct: 1048318 agctcgacgccgacgacgtccg 1048297
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 314 agctcgacgccgacgacgtccg 335 |||||||||||||||||||||| Sbjct: 2365846 agctcgacgccgacgacgtccg 2365825
>dbj|AB088119.1| Streptomyces sp. TP-A0274 staurosporine biosynthetic gene cluster (staR, staB, staA, staN, staG, staO, staD, staP, staMA, staJ, staK, staI, staE, staMB), complete cds Length = 22999 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 317 tcgacgccgacgacgtccgcctcgcc 342 |||||||||||||||||| ||||||| Sbjct: 16726 tcgacgccgacgacgtccccctcgcc 16751
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 314 agctcgacgccgacgacgtccg 335 |||||||||||||||||||||| Sbjct: 1914338 agctcgacgccgacgacgtccg 1914317
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 315 gctcgacgccgacgacgtccgc 336 |||||||||||||||||||||| Sbjct: 2264057 gctcgacgccgacgacgtccgc 2264036
>dbj|AP005542.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0473D02 Length = 146185 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 315 gctcgacgccgacgacgtccgc 336 |||||||||||||||||||||| Sbjct: 11556 gctcgacgccgacgacgtccgc 11535
>dbj|AP003911.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1368_G08 Length = 107074 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 315 gctcgacgccgacgacgtccgc 336 |||||||||||||||||||||| Sbjct: 62184 gctcgacgccgacgacgtccgc 62163
>dbj|AP004341.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524E08 Length = 154696 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 113 ccgcggcggccggaggaggggcggcg 138 ||||||||||||||||||| |||||| Sbjct: 23482 ccgcggcggccggaggaggtgcggcg 23457
>dbj|AK107120.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B04, full insert sequence Length = 1509 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 113 ccgcggcggccggaggaggggcggcg 138 ||||||||||||||||||| |||||| Sbjct: 720 ccgcggcggccggaggaggtgcggcg 745
>gb|DQ005580.1| Arum maculatum PISTILLATA-like protein (PI) mRNA, partial cds Length = 730 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 267 cgtgctcggcgacgcccaggtctac 291 ||||||| ||||||||||||||||| Sbjct: 5 cgtgctctgcgacgcccaggtctac 29
>emb|Z83851.17|HS989H11 Human DNA sequence from clone CTA-989H11 on chromosome 22q13.1-13.2, complete sequence Length = 118831 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 117 ggcggccggaggaggggcggcggga 141 ||||| ||||||||||||||||||| Sbjct: 91424 ggcgggcggaggaggggcggcggga 91448
>ref|XM_505147.1| Yarrowia lipolytica CLIB122, YALI0F08085g predicted mRNA Length = 1053 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 cgccatccaggccaaggtcaa 359 ||||||||||||||||||||| Sbjct: 96 cgccatccaggccaaggtcaa 116
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 agccgccgccccgcgaggttc 394 ||||||||||||||||||||| Sbjct: 219219 agccgccgccccgcgaggttc 219239
>gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050E08, complete sequence Length = 180499 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 gcggcggccggaggaggggcggcgg 139 ||||||||||||||||| ||||||| Sbjct: 126782 gcggcggccggaggaggcgcggcgg 126758
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 gcggcggccggaggaggggcggcgg 139 ||||||||||||||||| ||||||| Sbjct: 3844986 gcggcggccggaggaggcgcggcgg 3844962
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 gcggcggccggaggaggggcggcgg 139 |||||||| |||||||||||||||| Sbjct: 19663231 gcggcggcgggaggaggggcggcgg 19663255 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 gcggcggccggaggaggggcggcg 138 |||||||| ||||||||||||||| Sbjct: 20650896 gcggcggcgggaggaggggcggcg 20650873
>dbj|AP004794.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0506C10 Length = 150549 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 gcggcggccggaggaggggcggcgg 139 |||||||| |||||||||||||||| Sbjct: 144963 gcggcggcgggaggaggggcggcgg 144987
>dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0001B21 Length = 143722 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 gcggcggccggaggaggggcggcgg 139 |||||||| |||||||||||||||| Sbjct: 47687 gcggcggcgggaggaggggcggcgg 47711
>dbj|AK120650.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156M02, full insert sequence Length = 1512 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 gcggcggccggaggaggggcggcgg 139 |||||||| |||||||||||||||| Sbjct: 525 gcggcggcgggaggaggggcggcgg 549
>dbj|AK108739.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-E02, full insert sequence Length = 1455 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 115 gcggcggccggaggaggggcggcgg 139 |||||||| |||||||||||||||| Sbjct: 482 gcggcggcgggaggaggggcggcgg 506
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 gcggcggccggaggaggggcggcgg 139 ||||||||||||||||| ||||||| Sbjct: 3844907 gcggcggccggaggaggcgcggcgg 3844883
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 cgccatccaggccaaggtcaa 359 ||||||||||||||||||||| Sbjct: 1141662 cgccatccaggccaaggtcaa 1141682
>ref|XM_470960.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 954 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 gctccgctccatggggctcggcga 203 |||| ||||||||||||||||||| Sbjct: 52 gctcagctccatggggctcggcga 29
>ref|NM_190386.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2043 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 cggcaagccccagctcgacg 322 |||||||||||||||||||| Sbjct: 442 cggcaagccccagctcgacg 423
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gctcgacgccgacgacgtcc 334 |||||||||||||||||||| Sbjct: 100959 gctcgacgccgacgacgtcc 100978
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gctcgacgccgacgacgtcc 334 |||||||||||||||||||| Sbjct: 600362 gctcgacgccgacgacgtcc 600343
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 tccttctcccagccgccgcc 383 |||||||||||||||||||| Sbjct: 4041260 tccttctcccagccgccgcc 4041241
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 tccttctcccagccgccgcc 383 |||||||||||||||||||| Sbjct: 3826252 tccttctcccagccgccgcc 3826233
>gb|AY224536.1| Oryza sativa (japonica cultivar-group) isolate 23274 arm repeat protein mRNA, complete cds Length = 2043 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 cggcaagccccagctcgacg 322 |||||||||||||||||||| Sbjct: 442 cggcaagccccagctcgacg 423
>gb|AY524043.1| Micromonospora echinospora ATCC 15835 gentamicin biosynthesis gene cluster, complete sequence Length = 38146 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 gccgacgacgtccgcctcgc 341 |||||||||||||||||||| Sbjct: 28295 gccgacgacgtccgcctcgc 28314
>gb|AC160978.4| Mus musculus BAC clone RP23-426B17 from chromosome 13, complete sequence Length = 197652 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 caacttctccttctcccagc 376 |||||||||||||||||||| Sbjct: 40630 caacttctccttctcccagc 40649
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 gccccagctcgacgccgacg 328 |||||||||||||||||||| Sbjct: 31206 gccccagctcgacgccgacg 31225
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 gccccagctcgacgccgacg 328 |||||||||||||||||||| Sbjct: 144368 gccccagctcgacgccgacg 144387
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 gccccagctcgacgccgacg 328 |||||||||||||||||||| Sbjct: 98512 gccccagctcgacgccgacg 98531
>emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0094O15, complete sequence Length = 144778 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 gctccgctccatggggctcggcga 203 |||| ||||||||||||||||||| Sbjct: 16055 gctcagctccatggggctcggcga 16078
>emb|AJ575934.2|MPU575934 Micromonospora purpurea DOS biosynthetic gene cluster Length = 32668 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 gccgacgacgtccgcctcgc 341 |||||||||||||||||||| Sbjct: 8204 gccgacgacgtccgcctcgc 8185
>emb|AJ242746.1|REQ242746 Rhodococcus equi corU1, choE, corD1 and corD2 genes Length = 3912 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 ttcctcgacctcgcctaccgctac 258 ||||||||||||||| |||||||| Sbjct: 3467 ttcctcgacctcgccgaccgctac 3444
>gb|AE005780.1| Caulobacter crescentus CB15 section 106 of 359 of the complete genome Length = 14131 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 tctacgccgaccacgccggc 306 |||||||||||||||||||| Sbjct: 5737 tctacgccgaccacgccggc 5718
>gb|AE005893.1| Caulobacter crescentus CB15 section 219 of 359 of the complete genome Length = 10274 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 258 cgccggggacgtgctcggcgacgcccag 285 |||||| |||||||||||||| |||||| Sbjct: 8412 cgccggtgacgtgctcggcgatgcccag 8385
>gb|AF262220.2|AF262220 Streptomyces venezuelae chloramphenicol biosynthetic gene cluster, partial sequence Length = 14159 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ctcggcgagggcgagtacga 215 |||||||||||||||||||| Sbjct: 4302 ctcggcgagggcgagtacga 4321
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tcgacgccgacgacgtccgc 336 |||||||||||||||||||| Sbjct: 1602121 tcgacgccgacgacgtccgc 1602102 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 ccgaccacgccggcaagccc 312 |||||||||||||||||||| Sbjct: 465224 ccgaccacgccggcaagccc 465243
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 cccatccagcccgcggcggccgga 126 ||||||||| |||||||||||||| Sbjct: 3215901 cccatccaggccgcggcggccgga 3215924
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 gccgcgcgtcgtgcaccagt 235 |||||||||||||||||||| Sbjct: 128127 gccgcgcgtcgtgcaccagt 128146
>gb|AC129563.14| Mus musculus chromosome 15, clone RP23-223M20, complete sequence Length = 175021 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 ggcggccggaggaggggcggcggg 140 ||||| |||||||||||||||||| Sbjct: 140678 ggcgggcggaggaggggcggcggg 140701
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 gctccgctccatggggctcggcga 203 |||| ||||||||||||||||||| Sbjct: 220235 gctcagctccatggggctcggcga 220258
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 gcggcggccggaggaggggc 134 |||||||||||||||||||| Sbjct: 3058715 gcggcggccggaggaggggc 3058696
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 cggcaagccccagctcgacg 322 |||||||||||||||||||| Sbjct: 35180652 cggcaagccccagctcgacg 35180671
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031D02 Length = 183692 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 cggcaagccccagctcgacg 322 |||||||||||||||||||| Sbjct: 59736 cggcaagccccagctcgacg 59755
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tcgacgccgacgacgtccgc 336 |||||||||||||||||||| Sbjct: 2707477 tcgacgccgacgacgtccgc 2707496
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 tccgcctcgccatccaggccaagg 355 |||||| ||||||||||||||||| Sbjct: 1756686 tccgccacgccatccaggccaagg 1756709
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tcgacgccgacgacgtccgc 336 |||||||||||||||||||| Sbjct: 1347303 tcgacgccgacgacgtccgc 1347322
>dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0427B07 Length = 172058 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 gcggcggccggaggaggggcggcg 138 |||||||| ||||||||||||||| Sbjct: 73303 gcggcggcgggaggaggggcggcg 73280
>dbj|AK121495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033001A07, full insert sequence Length = 3089 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 gcggcggccggaggaggggc 134 |||||||||||||||||||| Sbjct: 208 gcggcggccggaggaggggc 189
>dbj|AK109955.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-A11, full insert sequence Length = 3826 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 gccccagctcgacgccgacg 328 |||||||||||||||||||| Sbjct: 1450 gccccagctcgacgccgacg 1469
>dbj|AK073274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029B20, full insert sequence Length = 1504 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 gctccgctccatggggctcggcga 203 |||| ||||||||||||||||||| Sbjct: 326 gctcagctccatggggctcggcga 303
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cgccgacgacgtccgcctcg 340 |||||||||||||||||||| Sbjct: 55926 cgccgacgacgtccgcctcg 55945
>dbj|AK066103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051M22, full insert sequence Length = 1159 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 gctccgctccatggggctcggcga 203 |||| ||||||||||||||||||| Sbjct: 142 gctcagctccatggggctcggcga 119
>dbj|AK065838.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039J03, full insert sequence Length = 3101 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 gcggcggccggaggaggggc 134 |||||||||||||||||||| Sbjct: 209 gcggcggccggaggaggggc 190
>dbj|AK065307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O10, full insert sequence Length = 2414 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 cggcaagccccagctcgacg 322 |||||||||||||||||||| Sbjct: 613 cggcaagccccagctcgacg 594
>dbj|AK061755.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A02, full insert sequence Length = 1250 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 gctccgctccatggggctcggcga 203 |||| ||||||||||||||||||| Sbjct: 82 gctcagctccatggggctcggcga 59
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cgccgacgacgtccgcctcg 340 |||||||||||||||||||| Sbjct: 55926 cgccgacgacgtccgcctcg 55945
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 cgcgcgtggtgcgggagctg 180 |||||||||||||||||||| Sbjct: 1785955 cgcgcgtggtgcgggagctg 1785974
>emb|AJ628149.4| Micromonospora echinospora genomic region of the gentamicin biosynthesis gene cluster, strain DSM 43036 Length = 84222 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 gccgacgacgtccgcctcgc 341 |||||||||||||||||||| Sbjct: 40544 gccgacgacgtccgcctcgc 40563
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 gcggcggccggaggaggggc 134 |||||||||||||||||||| Sbjct: 3058660 gcggcggccggaggaggggc 3058641
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 gcggcggccggaggaggggc 134 |||||||||||||||||||| Sbjct: 96128 gcggcggccggaggaggggc 96147
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 cgacgccgacgacgtccgcc 337 |||||||||||||||||||| Sbjct: 714888 cgacgccgacgacgtccgcc 714869 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,141,547 Number of Sequences: 3902068 Number of extensions: 2141547 Number of successful extensions: 57278 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53426 Number of HSP's gapped (non-prelim): 3852 length of query: 421 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 399 effective length of database: 17,147,199,772 effective search space: 6841732709028 effective search space used: 6841732709028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
