ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast64h01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK103088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118I15, full insert sequence Length = 1518 Score = 56.0 bits (28), Expect = 4e-05 Identities = 70/84 (83%) Strand = Plus / Plus Query: 121 gccggcgctggactggccggcctcgccgtcgctctgggactccacaggaagggcgttcgg 180 |||||||| || || ||||| ||||| || || || ||||| |||||||| || | || Sbjct: 113 gccggcgccggcctcgccgggctcgcagtggccctcggactgcacaggaaaggactgagg 172 Query: 181 agcgtggtgctggagtcgtcgccg 204 |||||||||||||||||||||||| Sbjct: 173 agcgtggtgctggagtcgtcgccg 196
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 7e-04 Identities = 26/26 (100%) Strand = Plus / Plus Query: 179 ggagcgtggtgctggagtcgtcgccg 204 |||||||||||||||||||||||||| Sbjct: 2943674 ggagcgtggtgctggagtcgtcgccg 2943699 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ggtgctggagtcgtcgccgga 206 ||||||||||||||||||||| Sbjct: 2940419 ggtgctggagtcgtcgccgga 2940439 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ggtgctggagtcgtcgccgga 206 ||||||||||||||||||||| Sbjct: 2916789 ggtgctggagtcgtcgccgga 2916809
>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15, complete sequence Length = 166282 Score = 52.0 bits (26), Expect = 7e-04 Identities = 26/26 (100%) Strand = Plus / Plus Query: 179 ggagcgtggtgctggagtcgtcgccg 204 |||||||||||||||||||||||||| Sbjct: 81161 ggagcgtggtgctggagtcgtcgccg 81186 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ggtgctggagtcgtcgccgga 206 ||||||||||||||||||||| Sbjct: 77906 ggtgctggagtcgtcgccgga 77926 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ggtgctggagtcgtcgccgga 206 ||||||||||||||||||||| Sbjct: 54276 ggtgctggagtcgtcgccgga 54296
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 7e-04 Identities = 26/26 (100%) Strand = Plus / Plus Query: 179 ggagcgtggtgctggagtcgtcgccg 204 |||||||||||||||||||||||||| Sbjct: 2943785 ggagcgtggtgctggagtcgtcgccg 2943810 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ggtgctggagtcgtcgccgga 206 ||||||||||||||||||||| Sbjct: 2940530 ggtgctggagtcgtcgccgga 2940550 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ggtgctggagtcgtcgccgga 206 ||||||||||||||||||||| Sbjct: 2916900 ggtgctggagtcgtcgccgga 2916920
>ref|XM_580001.1| PREDICTED: Rattus norvegicus LOC499665 (LOC499665), mRNA Length = 526 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 tgggactccacaggaagggcg 175 ||||||||||||||||||||| Sbjct: 479 tgggactccacaggaagggcg 459
>emb|CT573086.9| Mouse DNA sequence from clone RP23-163K5 on chromosome 16, complete sequence Length = 208384 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 gtcgctctgggactccacag 167 |||||||||||||||||||| Sbjct: 162423 gtcgctctgggactccacag 162442
>dbj|AP003155.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-567F3, complete sequences Length = 157385 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 gtcgctctgggactccacag 167 |||||||||||||||||||| Sbjct: 89189 gtcgctctgggactccacag 89170
>emb|AL805960.10| Mouse DNA sequence from clone RP23-20P17 on chromosome X, complete sequence Length = 172780 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 151 gctctgggactccacaggaagggcgttc 178 |||||||||||||| |||||||| |||| Sbjct: 25897 gctctgggactccagaggaagggggttc 25924 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,353,325 Number of Sequences: 3902068 Number of extensions: 1353325 Number of successful extensions: 97609 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97481 Number of HSP's gapped (non-prelim): 127 length of query: 207 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 185 effective length of database: 17,147,199,772 effective search space: 3172231957820 effective search space used: 3172231957820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
