ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast64e06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 139 bits (70), Expect = 9e-30 Identities = 106/118 (89%) Strand = Plus / Minus Query: 165 cttctgcaagaaaccatgagaaacatcatggagagaagcccccacgagtcctccttctcc 224 |||| |||| |||| ||||| | |||||||| ||| ||||| |||||||| ||||||||| Sbjct: 25820371 cttcagcaacaaacgatgaggaccatcatggcgaggagccctcacgagtcatccttctcc 25820312 Query: 225 ttctcccggaggcacttcaagtggccggttctcggcaagagcagcagccatggcgcca 282 |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 25820311 ttctccaggaggcacttcaagtggccagttcttggcaagagcagcagccatggcgcca 25820254 Score = 87.7 bits (44), Expect = 3e-14 Identities = 91/106 (85%), Gaps = 3/106 (2%) Strand = Plus / Minus Query: 334 aggccgaggatgacgaggaggcgtccatggctttctcctccacctgccggtccttccact 393 |||| ||||| ||||||||||| ||||||| |||||||||||||||| ||| ||||||| Sbjct: 25820226 aggcagaggacgacgaggaggccaccatggccttctcctccacctgcccgtcgttccact 25820167 Query: 394 cggaggacttggtgtctcccccgcc---caagcctctcaagcagca 436 | |||||||| ||||| || ||||| |||||| ||||||||||| Sbjct: 25820166 ccgaggacttcgtgtcccctccgccctgcaagccgctcaagcagca 25820121 Score = 71.9 bits (36), Expect = 2e-09 Identities = 52/56 (92%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 55 cagtttggtgggttctgctcaccagtttcccctcacagtacaaaacc-ccattcct 109 |||||||||||||||||||||||||| ||||| | |||||||||||| |||||||| Sbjct: 25820492 cagtttggtgggttctgctcaccagtctccccccgcagtacaaaacctccattcct 25820437
>dbj|AP003725.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0510C12 Length = 177049 Score = 139 bits (70), Expect = 9e-30 Identities = 106/118 (89%) Strand = Plus / Minus Query: 165 cttctgcaagaaaccatgagaaacatcatggagagaagcccccacgagtcctccttctcc 224 |||| |||| |||| ||||| | |||||||| ||| ||||| |||||||| ||||||||| Sbjct: 60295 cttcagcaacaaacgatgaggaccatcatggcgaggagccctcacgagtcatccttctcc 60236 Query: 225 ttctcccggaggcacttcaagtggccggttctcggcaagagcagcagccatggcgcca 282 |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 60235 ttctccaggaggcacttcaagtggccagttcttggcaagagcagcagccatggcgcca 60178 Score = 87.7 bits (44), Expect = 3e-14 Identities = 91/106 (85%), Gaps = 3/106 (2%) Strand = Plus / Minus Query: 334 aggccgaggatgacgaggaggcgtccatggctttctcctccacctgccggtccttccact 393 |||| ||||| ||||||||||| ||||||| |||||||||||||||| ||| ||||||| Sbjct: 60150 aggcagaggacgacgaggaggccaccatggccttctcctccacctgcccgtcgttccact 60091 Query: 394 cggaggacttggtgtctcccccgcc---caagcctctcaagcagca 436 | |||||||| ||||| || ||||| |||||| ||||||||||| Sbjct: 60090 ccgaggacttcgtgtcccctccgccctgcaagccgctcaagcagca 60045 Score = 71.9 bits (36), Expect = 2e-09 Identities = 52/56 (92%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 55 cagtttggtgggttctgctcaccagtttcccctcacagtacaaaacc-ccattcct 109 |||||||||||||||||||||||||| ||||| | |||||||||||| |||||||| Sbjct: 60416 cagtttggtgggttctgctcaccagtctccccccgcagtacaaaacctccattcct 60361
>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0039G05 Length = 138429 Score = 139 bits (70), Expect = 9e-30 Identities = 106/118 (89%) Strand = Plus / Minus Query: 165 cttctgcaagaaaccatgagaaacatcatggagagaagcccccacgagtcctccttctcc 224 |||| |||| |||| ||||| | |||||||| ||| ||||| |||||||| ||||||||| Sbjct: 122835 cttcagcaacaaacgatgaggaccatcatggcgaggagccctcacgagtcatccttctcc 122776 Query: 225 ttctcccggaggcacttcaagtggccggttctcggcaagagcagcagccatggcgcca 282 |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 122775 ttctccaggaggcacttcaagtggccagttcttggcaagagcagcagccatggcgcca 122718 Score = 87.7 bits (44), Expect = 3e-14 Identities = 91/106 (85%), Gaps = 3/106 (2%) Strand = Plus / Minus Query: 334 aggccgaggatgacgaggaggcgtccatggctttctcctccacctgccggtccttccact 393 |||| ||||| ||||||||||| ||||||| |||||||||||||||| ||| ||||||| Sbjct: 122690 aggcagaggacgacgaggaggccaccatggccttctcctccacctgcccgtcgttccact 122631 Query: 394 cggaggacttggtgtctcccccgcc---caagcctctcaagcagca 436 | |||||||| ||||| || ||||| |||||| ||||||||||| Sbjct: 122630 ccgaggacttcgtgtcccctccgccctgcaagccgctcaagcagca 122585 Score = 71.9 bits (36), Expect = 2e-09 Identities = 52/56 (92%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 55 cagtttggtgggttctgctcaccagtttcccctcacagtacaaaacc-ccattcct 109 |||||||||||||||||||||||||| ||||| | |||||||||||| |||||||| Sbjct: 122956 cagtttggtgggttctgctcaccagtctccccccgcagtacaaaacctccattcct 122901
>ref|NM_192281.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 924 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 188 catcatggagagaagcccccacgagtcctccttctccttctcccggaggcacttcaagtg 247 |||||||| ||| ||||| |||||||| ||||||||||||||| |||||||||||||||| Sbjct: 9 catcatggcgaggagccctcacgagtcatccttctccttctccaggaggcacttcaagtg 68 Query: 248 gccggttctcggcaagagcagcagccatggcgcca 282 ||| ||||| ||||||||||||||||||||||||| Sbjct: 69 gccagttcttggcaagagcagcagccatggcgcca 103 Score = 87.7 bits (44), Expect = 3e-14 Identities = 91/106 (85%), Gaps = 3/106 (2%) Strand = Plus / Plus Query: 334 aggccgaggatgacgaggaggcgtccatggctttctcctccacctgccggtccttccact 393 |||| ||||| ||||||||||| ||||||| |||||||||||||||| ||| ||||||| Sbjct: 131 aggcagaggacgacgaggaggccaccatggccttctcctccacctgcccgtcgttccact 190 Query: 394 cggaggacttggtgtctcccccgcc---caagcctctcaagcagca 436 | |||||||| ||||| || ||||| |||||| ||||||||||| Sbjct: 191 ccgaggacttcgtgtcccctccgccctgcaagccgctcaagcagca 236
>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10, complete sequence Length = 127304 Score = 79.8 bits (40), Expect = 7e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 220 tctccttctcccggaggcacttcaagtggccggttctcggcaagagcagcagccatggcg 279 |||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||||||| Sbjct: 51934 tctccttctctaggaggcatttcaagtggccggttcttggcaagagctacagccatggcg 51875 Query: 280 ccac 283 |||| Sbjct: 51874 ccac 51871
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 79.8 bits (40), Expect = 7e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 220 tctccttctcccggaggcacttcaagtggccggttctcggcaagagcagcagccatggcg 279 |||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||||||| Sbjct: 28524241 tctccttctctaggaggcatttcaagtggccggttcttggcaagagctacagccatggcg 28524182 Query: 280 ccac 283 |||| Sbjct: 28524181 ccac 28524178
>gb|AY058913.1| Chlamydomonas reinhardtii RAD51C protein (RAD51C) mRNA, complete cds Length = 2463 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 258 ggcaagagcagcagccatggcgcc 281 |||||||||||||||||||||||| Sbjct: 1613 ggcaagagcagcagccatggcgcc 1590
>ref|XM_870422.1| PREDICTED: Bos taurus hypothetical protein LOC618094 (LOC618094), mRNA Length = 759 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 334 aggccgaggatgacgaggagg 354 ||||||||||||||||||||| Sbjct: 200 aggccgaggatgacgaggagg 220
>emb|AL157971.4|CNS01RGG Human chromosome 14 DNA sequence BAC R-933I1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176368 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 ttctgctcaccagtttcccct 87 ||||||||||||||||||||| Sbjct: 144524 ttctgctcaccagtttcccct 144504
>gb|AC154730.3| Mus musculus BAC clone RP23-120M21 from chromosome 14, complete sequence Length = 217242 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 catagataggcacacacagcc 142 ||||||||||||||||||||| Sbjct: 177847 catagataggcacacacagcc 177827
>gb|AC145956.4| Gallus gallus BAC clone CH261-14N1 from chromosome unknown, complete sequence Length = 243969 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 caccagcagcttctgcaagaa 176 ||||||||||||||||||||| Sbjct: 25803 caccagcagcttctgcaagaa 25823
>gb|AC122860.5| Mus musculus BAC clone RP23-135A22 from 12, complete sequence Length = 233864 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 agacagagctcacagtcacac 22 ||||||||||||||||||||| Sbjct: 101456 agacagagctcacagtcacac 101436
>gb|AC137124.17| Mus musculus chromosome 3, clone RP24-229P11, complete sequence Length = 172081 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 ggttctcggcaagagcagcagcca 274 ||||||||||||||||| |||||| Sbjct: 86104 ggttctcggcaagagcaacagcca 86081
>gb|AC011070.8| Drosophila melanogaster clone BACR02B12, complete sequence Length = 168850 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 tcctccttctccttctcccg 232 |||||||||||||||||||| Sbjct: 132484 tcctccttctccttctcccg 132465
>gb|BC073376.1| Xenopus laevis MGC80807 protein, mRNA (cDNA clone MGC:80807 IMAGE:5513751), complete cds Length = 5809 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cagagctcacagtcacacac 24 |||||||||||||||||||| Sbjct: 3505 cagagctcacagtcacacac 3524
>ref|XM_958539.1| Neurospora crassa OR74A hypothetical protein (NCU06791.1) partial mRNA Length = 1980 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 tcctccttctccttctcccg 232 |||||||||||||||||||| Sbjct: 1577 tcctccttctccttctcccg 1558
>ref|XM_327076.1| Neurospora crassa OR74A hypothetical protein (NCU06791.1) partial mRNA Length = 1980 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 tcctccttctccttctcccg 232 |||||||||||||||||||| Sbjct: 1577 tcctccttctccttctcccg 1558
>gb|AC162455.9| Mus musculus chromosome 3, clone RP24-141D15, complete sequence Length = 161155 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 agtcctccttctccttctcc 230 |||||||||||||||||||| Sbjct: 44678 agtcctccttctccttctcc 44697
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 tgccgccgccgcggaggaag 306 |||||||||||||||||||| Sbjct: 154543 tgccgccgccgcggaggaag 154524
>ref|XM_504975.1| Yarrowia lipolytica CLIB122, YALI0F04037g predicted mRNA Length = 1263 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 tcctccttctccttctcccg 232 |||||||||||||||||||| Sbjct: 764 tcctccttctccttctcccg 745
>emb|AL358790.22| Human DNA sequence from clone RP11-753C18 on chromosome 10 Contains three novel genes, the CYP17A1 gene for cytochrome P450 17A1, a profilin 1 (PFN1) pseudogene, the gene for methyltransferase cyt19, an unactive progesterone receptor 23 kD (TEBP) pseudogene, a ribosomal protein L22 (RPL22) pseudogene and a CpG island, complete sequence Length = 131753 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctcaccagtttcccctcaca 91 |||||||||||||||||||| Sbjct: 68293 ctcaccagtttcccctcaca 68274
>gb|AC104256.7| Homo sapiens chromosome 8, clone CTD-2384G12, complete sequence Length = 135880 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 ttctccttctcccggaggca 238 |||||||||||||||||||| Sbjct: 27118 ttctccttctcccggaggca 27099
>gb|AC103601.15| Mus musculus chromosome 3, clone RP23-396C13, complete sequence Length = 186792 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 agtcctccttctccttctcc 230 |||||||||||||||||||| Sbjct: 168499 agtcctccttctccttctcc 168518
>emb|AL356173.2|NCB14D6 Neurospora crassa DNA linkage group II BAC contig B14D6 Length = 199386 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 tcctccttctccttctcccg 232 |||||||||||||||||||| Sbjct: 92886 tcctccttctccttctcccg 92905
>emb|BX004823.23| Zebrafish DNA sequence from clone DKEY-13A3 in linkage group 14, complete sequence Length = 197683 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gagaaacatcatggagagaa 201 |||||||||||||||||||| Sbjct: 182109 gagaaacatcatggagagaa 182090
>dbj|AK126628.1| Homo sapiens cDNA FLJ44667 fis, clone BRACE3004887 Length = 4321 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ctcaccagtttcccctcaca 91 |||||||||||||||||||| Sbjct: 2078 ctcaccagtttcccctcaca 2097
>dbj|AK128832.1| Homo sapiens cDNA FLJ46327 fis, clone TESTI4044076 Length = 3517 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ctcaccagtttcccctcaca 91 |||||||||||||||||||| Sbjct: 1282 ctcaccagtttcccctcaca 1301
>gb|AC092860.39| Pan troglodytes clone rp43-125j14, complete sequence Length = 160656 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ctcaccagtttcccctcaca 91 |||||||||||||||||||| Sbjct: 40059 ctcaccagtttcccctcaca 40078
>gb|AC063960.10| Homo sapiens chromosome 10 clone RP11-105F10, complete sequence Length = 174677 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 agtcctccttctccttctcc 230 |||||||||||||||||||| Sbjct: 106589 agtcctccttctccttctcc 106570
>gb|AC117379.3| Homo sapiens 3 BAC RP11-392C7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181191 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 aagaaaccatgagaaacatc 191 |||||||||||||||||||| Sbjct: 120638 aagaaaccatgagaaacatc 120657
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 cggctcggacaagcaggccgagga 343 ||||||| |||||||||||||||| Sbjct: 3836302 cggctcgtacaagcaggccgagga 3836325
>gb|L41825.1|HUMCYP17P Homo sapiens CYP17 gene, 5' end Length = 3564 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ctcaccagtttcccctcaca 91 |||||||||||||||||||| Sbjct: 1588 ctcaccagtttcccctcaca 1607
>ref|NM_057951.2| Drosophila melanogaster Adenylyl cyclase 35C CG9210-RA, transcript variant A (Ac13E), mRNA Length = 6597 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 tcctccttctccttctcccg 232 |||||||||||||||||||| Sbjct: 2396 tcctccttctccttctcccg 2377
>ref|NM_001014745.1| Drosophila melanogaster Adenylyl cyclase 35C CG9210-RB, transcript variant B (Ac13E), mRNA Length = 7171 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 tcctccttctccttctcccg 232 |||||||||||||||||||| Sbjct: 2396 tcctccttctccttctcccg 2377
>gb|AC016572.6| Homo sapiens chromosome 5 clone CTB-22L19, complete sequence Length = 143687 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 tctcctccacctgccggtccttcc 390 |||||||||||||||||| ||||| Sbjct: 113533 tctcctccacctgccggtgcttcc 113510
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 caccagcagcttctgcaaga 175 |||||||||||||||||||| Sbjct: 5723477 caccagcagcttctgcaaga 5723458
>gb|AC000032.7| Homo sapiens Chromosome 1p13.3 Cosmid Clone cgtm12, complete sequence Length = 30140 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctcaccagtttcccctcaca 91 |||||||||||||||||||| Sbjct: 6674 ctcaccagtttcccctcaca 6655
>gb|AC010706.8|AC010706 Drosophila melanogaster, chromosome X, region 13C-13E, BAC clone BACR36D15, complete sequence Length = 159513 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 tcctccttctccttctcccg 232 |||||||||||||||||||| Sbjct: 152846 tcctccttctccttctcccg 152865
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 gcagcagccatggcgccact 284 |||||||||||||||||||| Sbjct: 15011387 gcagcagccatggcgccact 15011368
>gb|AC091874.4| Homo sapiens chromosome 5 clone CTD-2593A12, complete sequence Length = 146078 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 367 tctcctccacctgccggtccttcc 390 |||||||||||||||||| ||||| Sbjct: 110500 tctcctccacctgccggtgcttcc 110523
>gb|AC009144.5|AC009144 Homo sapiens chromosome 16 clone RP11-551E2, complete sequence Length = 173758 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctcaccagtttcccctcaca 91 |||||||||||||||||||| Sbjct: 52327 ctcaccagtttcccctcaca 52308
>gb|AC154633.2| Mus musculus BAC clone RP23-296I10 from chromosome 12, complete sequence Length = 216169 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 acagagctcacagtcacaca 23 |||||||||||||||||||| Sbjct: 214289 acagagctcacagtcacaca 214308
>gb|AF528099.1| Homo sapiens transforming acidic coiled coil 2, long isoform (TACC2) mRNA, complete cds Length = 9708 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 agtcctccttctccttctcc 230 |||||||||||||||||||| Sbjct: 895 agtcctccttctccttctcc 914
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ggacaagcaggccgaggatg 345 |||||||||||||||||||| Sbjct: 884303 ggacaagcaggccgaggatg 884284
>dbj|AP005426.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0668D04 Length = 148848 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 gcagcagccatggcgccact 284 |||||||||||||||||||| Sbjct: 3030 gcagcagccatggcgccact 3011
>dbj|AP005429.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0701F11 Length = 154950 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 gcagcagccatggcgccact 284 |||||||||||||||||||| Sbjct: 80833 gcagcagccatggcgccact 80814
>emb|BX544871.4| Zebrafish DNA sequence from clone DKEY-244F16 in linkage group 18, complete sequence Length = 203436 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 ccagtttcccctcacagtacaaaa 99 |||||||||||||||||| ||||| Sbjct: 155033 ccagtttcccctcacagtccaaaa 155056
>emb|BX005162.9| Mouse DNA sequence from clone RP23-359O2 on chromosome X, complete sequence Length = 83075 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 tgcaagaaaccatgagaaac 188 |||||||||||||||||||| Sbjct: 11986 tgcaagaaaccatgagaaac 12005
>dbj|AK121336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119L24, full insert sequence Length = 5325 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 gcagcagccatggcgccact 284 |||||||||||||||||||| Sbjct: 238 gcagcagccatggcgccact 219
>dbj|AK073292.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024I19, full insert sequence Length = 1616 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 gcagcagccatggcgccact 284 |||||||||||||||||||| Sbjct: 230 gcagcagccatggcgccact 211
>emb|CR382376.7| Zebrafish DNA sequence from clone DKEY-54L11 in linkage group 18, complete sequence Length = 48856 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 ccagtttcccctcacagtacaaaa 99 |||||||||||||||||| ||||| Sbjct: 7443 ccagtttcccctcacagtccaaaa 7420
>gb|AE003499.5| Drosophila melanogaster chromosome X, section 51 of 74 of the complete sequence Length = 300896 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 tcctccttctccttctcccg 232 |||||||||||||||||||| Sbjct: 110744 tcctccttctccttctcccg 110763
>emb|CT025623.13| Mouse DNA sequence from clone RP23-397E11 on chromosome 12, complete sequence Length = 205791 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 acagagctcacagtcacaca 23 |||||||||||||||||||| Sbjct: 120279 acagagctcacagtcacaca 120298
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 tcctccttctccttctcccg 232 |||||||||||||||||||| Sbjct: 604797 tcctccttctccttctcccg 604778
>ref|NM_206862.1| Homo sapiens transforming, acidic coiled-coil containing protein 2 (TACC2), transcript variant 1, mRNA Length = 9706 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 agtcctccttctccttctcc 230 |||||||||||||||||||| Sbjct: 914 agtcctccttctccttctcc 933 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,547,181 Number of Sequences: 3902068 Number of extensions: 4547181 Number of successful extensions: 161322 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 160906 Number of HSP's gapped (non-prelim): 412 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
