ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast64e05 |
|---|---|
| Clone Library Name | barley_pub |
>FD6E1_SOYBN (P48630) Omega-6 fatty acid desaturase, endoplasmic reticulum| isozyme 1 (EC 1.14.19.-) Length = 387 Score = 103 bits (258), Expect = 2e-22 Identities = 50/108 (46%), Positives = 66/108 (61%) Frame = +3 Query: 156 MGAGGRMTEKEREKQEQLGRAGGGAAFQRSPTDKPPFTLGQIKKAIPPHCFQRSIIKSFS 335 MG GR+ + E + ++ L R P KPPFT+GQ+KKAIPPHCFQRS++ SFS Sbjct: 9 MGGRGRVAKVEVQGKKPLSRV---------PNTKPPFTVGQLKKAIPPHCFQRSLLTSFS 59 Query: 336 YVVHDXXXXXXXXXXXXXWIPTLPTVLQLGAWPLYWIVQGCVMTGVWV 479 YVV+D + LP L AWP+YW++QGC++TGVWV Sbjct: 60 YVVYD-LSFAFIFYIATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWV 106
>FAD6E_ARATH (P46313) Omega-6 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) (Delta-12 desaturase) Length = 383 Score = 103 bits (258), Expect = 2e-22 Identities = 49/108 (45%), Positives = 63/108 (58%) Frame = +3 Query: 156 MGAGGRMTEKEREKQEQLGRAGGGAAFQRSPTDKPPFTLGQIKKAIPPHCFQRSIIKSFS 335 MGAGGRM K+ + +R P +KPPF++G +KKAIPPHCF+RSI +SFS Sbjct: 1 MGAGGRMPVPTSSKKSETDTT------KRVPCEKPPFSVGDLKKAIPPHCFKRSIPRSFS 54 Query: 336 YVVHDXXXXXXXXXXXXXWIPTLPTVLQLGAWPLYWIVQGCVMTGVWV 479 Y++ D + LP L AWPLYW QGCV+TG+WV Sbjct: 55 YLISDIIIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWV 102
>FAD6E_BRAJU (Q39287) Omega-6 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) (Delta-12 desaturase) Length = 384 Score = 103 bits (258), Expect = 2e-22 Identities = 50/108 (46%), Positives = 63/108 (58%) Frame = +3 Query: 156 MGAGGRMTEKEREKQEQLGRAGGGAAFQRSPTDKPPFTLGQIKKAIPPHCFQRSIIKSFS 335 MGAGGRM K+ + +R P + PPFT+G++KKAIPPHCF+RSI +SFS Sbjct: 1 MGAGGRMQVSPSPKKSETD------TLKRVPCETPPFTVGELKKAIPPHCFKRSIPRSFS 54 Query: 336 YVVHDXXXXXXXXXXXXXWIPTLPTVLQLGAWPLYWIVQGCVMTGVWV 479 Y++ D + P LP L AWPLYW QG V+TGVWV Sbjct: 55 YLIWDIIVASCFYYVATTYFPLLPHPLSYVAWPLYWACQGVVLTGVWV 102
>FD6E2_SOYBN (P48631) Omega-6 fatty acid desaturase, endoplasmic reticulum| isozyme 2 (EC 1.14.19.-) Length = 383 Score = 97.4 bits (241), Expect = 2e-20 Identities = 47/108 (43%), Positives = 62/108 (57%) Frame = +3 Query: 156 MGAGGRMTEKEREKQEQLGRAGGGAAFQRSPTDKPPFTLGQIKKAIPPHCFQRSIIKSFS 335 MGAGGR ++ ++ +R P +KP F+L QIKKAIPPHCFQRS+++SFS Sbjct: 1 MGAGGRTDVPPANRKSEVD------PLKRVPFEKPQFSLSQIKKAIPPHCFQRSVLRSFS 54 Query: 336 YVVHDXXXXXXXXXXXXXWIPTLPTVLQLGAWPLYWIVQGCVMTGVWV 479 YVV+D + LP L +YW VQGC++TGVWV Sbjct: 55 YVVYDLTIAFCLYYVATHYFHLLPGPLSFRGMAIYWAVQGCILTGVWV 102
>FAD12_CREAL (O81931) Delta(12) fatty acid dehydrogenase (EC 1.14.99.33)| (Crepenynate synthase) (Delta-12 fatty acid acetylenase) Length = 375 Score = 90.1 bits (222), Expect = 3e-18 Identities = 45/108 (41%), Positives = 57/108 (52%) Frame = +3 Query: 156 MGAGGRMTEKEREKQEQLGRAGGGAAFQRSPTDKPPFTLGQIKKAIPPHCFQRSIIKSFS 335 MG GGR GR +R D PPFT+ +K+AIPPHCF+RS+I+S Sbjct: 1 MGGGGR------------GRTSQKPLMERVSVD-PPFTVSDLKQAIPPHCFKRSVIRSSY 47 Query: 336 YVVHDXXXXXXXXXXXXXWIPTLPTVLQLGAWPLYWIVQGCVMTGVWV 479 Y+VHD +IP LP L AWPLYW Q ++TG+WV Sbjct: 48 YIVHDAIIAYIFYFLADKYIPILPAPLAYLAWPLYWFCQASILTGLWV 95
>FAD12_MORIS (P59668) Delta-12 fatty acid desaturase (EC 1.14.19.-)| Length = 400 Score = 59.3 bits (142), Expect = 5e-09 Identities = 29/83 (34%), Positives = 44/83 (53%) Frame = +3 Query: 231 AFQRSPTDKPPFTLGQIKKAIPPHCFQRSIIKSFSYVVHDXXXXXXXXXXXXXWIPTLPT 410 AF+R+ P FT+ +I++ IP HCF+RS ++ +V D Sbjct: 28 AFERN-YQLPEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENP 86 Query: 411 VLQLGAWPLYWIVQGCVMTGVWV 479 +++ AWP YWI+QG V TG+WV Sbjct: 87 LIRYLAWPAYWIMQGIVCTGIWV 109
>FAD12_MORAP (Q9Y8H5) Delta-12 fatty acid desaturase (EC 1.14.19.-)| Length = 400 Score = 59.3 bits (142), Expect = 5e-09 Identities = 29/83 (34%), Positives = 44/83 (53%) Frame = +3 Query: 231 AFQRSPTDKPPFTLGQIKKAIPPHCFQRSIIKSFSYVVHDXXXXXXXXXXXXXWIPTLPT 410 AF+R+ P FT+ +I++ IP HCF+RS ++ +V D Sbjct: 28 AFERN-YQLPEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENP 86 Query: 411 VLQLGAWPLYWIVQGCVMTGVWV 479 +++ AWP YWI+QG V TG+WV Sbjct: 87 LIRYLAWPAYWIMQGIVCTGIWV 109
>FAD3E_ARATH (P48623) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 386 Score = 54.7 bits (130), Expect = 1e-07 Identities = 27/78 (34%), Positives = 38/78 (48%) Frame = +3 Query: 246 PTDKPPFTLGQIKKAIPPHCFQRSIIKSFSYVVHDXXXXXXXXXXXXXWIPTLPTVLQLG 425 P+ +PPF +G I+ AIP HC+ +S ++S SYVV D V Sbjct: 28 PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVY-------VDSWF 80 Query: 426 AWPLYWIVQGCVMTGVWV 479 WPLYW QG + ++V Sbjct: 81 LWPLYWAAQGTLFWAIFV 98
>FAD3E_BRANA (P48624) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 383 Score = 54.7 bits (130), Expect = 1e-07 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Frame = +3 Query: 246 PTDKPPFTLGQIKKAIPPHCFQRSIIKSFSYVVHDXXXXXXXXXXX---XXWIPTLPTVL 416 P+ +PPF +G I+ AIP HC+ +S ++S SYV D W Sbjct: 25 PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWF------- 77 Query: 417 QLGAWPLYWIVQGCVMTGVWV 479 WPLYW+ QG + ++V Sbjct: 78 ---LWPLYWVAQGTLFWAIFV 95
>FAD3E_TOBAC (P48626) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 379 Score = 52.4 bits (124), Expect = 6e-07 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%) Frame = +3 Query: 234 FQRSPTDKPPFTLGQIKKAIPPHCFQRSIIKSFSYVVHDXXXXXXXXXXXXXWIPTLPTV 413 F+ P+ PPF L +I+ IP HC+ + ++S SYVV D ++ TL + Sbjct: 20 FEFDPSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRD-----------VIFVATLIGI 68 Query: 414 -LQLGAW---PLYWIVQGCVMTGVWV 479 + L +W PLYW +QG + ++V Sbjct: 69 AIHLDSWLFYPLYWAIQGTMFWAIFV 94
>FAD3C_ARATH (P46310) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 446 Score = 51.6 bits (122), Expect = 1e-06 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Frame = +3 Query: 246 PTDKPPFTLGQIKKAIPPHCFQRSIIKSFSYVVHDXX---XXXXXXXXXXXWIPTLPTVL 416 P PPF L I+ AIP HC+ ++ KS SYVV D WI Sbjct: 90 PGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWI------- 142 Query: 417 QLGAWPLYWIVQGCVMTGVWV 479 WPLYW+ QG + ++V Sbjct: 143 ---VWPLYWLAQGTMFWALFV 160
>FAD3C_RICCO (P48619) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 460 Score = 51.2 bits (121), Expect = 1e-06 Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 7/107 (6%) Frame = +3 Query: 180 EKEREKQEQLGRA----GGGAAFQRSPTDKPPFTLGQIKKAIPPHCFQRSIIKSFSYVVH 347 E +RE++E G G G F PPFTL I+ AIP HC+ ++ +S SYV+ Sbjct: 80 EDDREREEFNGIVNVDEGKGEFFDAGAP--PPFTLADIRAAIPKHCWVKNPWRSMSYVLR 137 Query: 348 D---XXXXXXXXXXXXXWIPTLPTVLQLGAWPLYWIVQGCVMTGVWV 479 D W+ AWPLYW QG + ++V Sbjct: 138 DVVVVFGLAAVAAYFNNWV----------AWPLYWFCQGTMFWALFV 174
>FAD3C_SESIN (P48620) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 447 Score = 50.4 bits (119), Expect = 2e-06 Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 3/103 (2%) Frame = +3 Query: 180 EKEREKQEQLGRAGGGAAFQRSPTDKPPFTLGQIKKAIPPHCFQRSIIKSFSYVVHDXX- 356 E+E E +E GG F P PPF L I++AIP HC+ + +S YVV D Sbjct: 74 EEEEENKEGERVINGGEEFD--PGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAV 131 Query: 357 --XXXXXXXXXXXWIPTLPTVLQLGAWPLYWIVQGCVMTGVWV 479 W+ WPLYW Q + ++V Sbjct: 132 VFGLAAVAAYFNNWV----------VWPLYWFAQSTMFWALFV 164
>FAD3C_BRANA (P48618) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) (Fragment) Length = 404 Score = 50.1 bits (118), Expect = 3e-06 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Frame = +3 Query: 246 PTDKPPFTLGQIKKAIPPHCFQRSIIKSFSYVVHDXX---XXXXXXXXXXXWIPTLPTVL 416 P PPF L I+ AIP HC+ ++ KS SYVV + W+ Sbjct: 48 PGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWL------- 100 Query: 417 QLGAWPLYWIVQGCVMTGVWV 479 WPLYWI QG + ++V Sbjct: 101 ---VWPLYWIAQGTMFWALFV 118
>FAD3E_PHAAU (P32291) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) (Indole-3-acetic acid-induced protein ARG1) Length = 380 Score = 50.1 bits (118), Expect = 3e-06 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Frame = +3 Query: 246 PTDKPPFTLGQIKKAIPPHCFQRSIIKSFSYVVHD---XXXXXXXXXXXXXWIPTLPTVL 416 P PPF + I+ AIP HC+++S ++S SYV+ D W Sbjct: 24 PGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWF------- 76 Query: 417 QLGAWPLYWIVQGCVMTGVWV 479 WPLYW QG + ++V Sbjct: 77 ---FWPLYWPAQGTMFWALFV 94
>FAD3C_SOYBN (P48621) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 453 Score = 49.7 bits (117), Expect = 4e-06 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Frame = +3 Query: 183 KEREKQEQLGRAGGGAAFQR----SPTDKPPFTLGQIKKAIPPHCFQRSIIKSFSYVVHD 350 +E +K L G ++ P PPF L I+ AIP HC+ + +S SYVV D Sbjct: 73 EEEQKSVDLTNGTNGVEHEKLPEFDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRD 132 Query: 351 XXX---XXXXXXXXXXWIPTLPTVLQLGAWPLYWIVQGCVMTGVWV 479 W+ WPLYW QG + ++V Sbjct: 133 VIAVFGLAAAAAYLNNWL----------VWPLYWAAQGTMFWALFV 168
>FAD3D_ARATH (P48622) Temperature-sensitive omega-3 fatty acid desaturase,| chloroplast precursor (EC 1.14.19.-) Length = 435 Score = 47.8 bits (112), Expect = 2e-05 Identities = 26/78 (33%), Positives = 34/78 (43%) Frame = +3 Query: 246 PTDKPPFTLGQIKKAIPPHCFQRSIIKSFSYVVHDXXXXXXXXXXXXXWIPTLPTVLQLG 425 P PPF L I+ AIP HC+ ++ S SYVV D + L Sbjct: 83 PGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWL------- 135 Query: 426 AWPLYWIVQGCVMTGVWV 479 WPLYW QG + ++V Sbjct: 136 LWPLYWFAQGTMFWALFV 153
>FAD3E_SOYBN (P48625) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 380 Score = 42.0 bits (97), Expect = 8e-04 Identities = 22/85 (25%), Positives = 40/85 (47%) Frame = +3 Query: 225 GAAFQRSPTDKPPFTLGQIKKAIPPHCFQRSIIKSFSYVVHDXXXXXXXXXXXXXWIPTL 404 G++F P+ PPF + +I+ +IP HC+ ++ +S SYV+ D + L Sbjct: 20 GSSFDFDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWL 79 Query: 405 PTVLQLGAWPLYWIVQGCVMTGVWV 479 W +Y +QG + ++V Sbjct: 80 -------LWLIYCPIQGTMFWALFV 97
>SPY3_HUMAN (O43610) Sprouty homolog 3 (Spry-3)| Length = 288 Score = 29.3 bits (64), Expect = 5.6 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Frame = -1 Query: 118 RADGRTPRERASARAHP--HRRVCSSCGRDERVVCAGGR 8 +ADG E + HP H +C CGR + V C R Sbjct: 124 KADGALKGEAEQSAGHPSEHLFICEECGRCKCVPCTAAR 162
>ATG4D_XENLA (Q68FJ9) Cysteine protease ATG4D (EC 3.4.22.-) (Autophagy-related| protein 4 homolog D) Length = 469 Score = 29.3 bits (64), Expect = 5.6 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 379 PLWSGSPPSLPCCSWARGRSTGSFR 453 P+ S SPPS+P S A G S G ++ Sbjct: 168 PIRSSSPPSMPLSSLATGHSAGDYQ 192
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 29.3 bits (64), Expect = 5.6 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%) Frame = +3 Query: 171 RMTEKEREKQEQLGRAGGGAAFQRSPTD---------KPPFTLGQIKKAIPPH 302 R E+EREK+ +L R+ A R+P + +PPF G +PP+ Sbjct: 818 REKEREREKERELERSVKLAQEGRAPVECPSLGPVPHRPPFEPGSAVATVPPY 870
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 29.3 bits (64), Expect = 5.6 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%) Frame = +3 Query: 171 RMTEKEREKQEQLGRAGGGAAFQRSPTD---------KPPFTLGQIKKAIPPH 302 R E+EREK+ +L R+ A R+P + +PPF G +PP+ Sbjct: 819 REKEREREKERELERSVKLAQEGRAPVECPSLGPVPHRPPFEPGSAVATVPPY 871
>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1183 Score = 29.3 bits (64), Expect = 5.6 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%) Frame = +3 Query: 171 RMTEKEREKQEQLGRAGGGAAFQRSPTD---------KPPFTLGQIKKAIPPH 302 R E+EREK+ +L R+ A R+P + +PPF G +PP+ Sbjct: 816 REKEREREKERELERSVKLAQEGRAPVECPSLGPVPHRPPFEPGSAVATVPPY 868
>P100_HCMVA (P08318) Large structural phosphoprotein (pp150) (150 kDa matrix| phosphoprotein) (Basic phosphoprotein) (BPP) (Tegument protein UL32) Length = 1048 Score = 28.9 bits (63), Expect = 7.3 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +1 Query: 391 GSPPSLPCCSWARGRSTGSFRAAS 462 G PPS+P A GR +GS RAAS Sbjct: 913 GRPPSVPVSGSAPGRLSGSSRAAS 936
>ENV2_MOUSE (P11370) Retrovirus-related Env polyprotein from Fv-4 locus| Length = 679 Score = 28.5 bits (62), Expect = 9.6 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +1 Query: 394 SPPSLPCCSWARGRSTGSFRAAS*PASGY 480 SPP PCCS +G +G R P + Y Sbjct: 97 SPPGPPCCSGDKGAVSGCARDCDEPLTSY 125 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,106,973 Number of Sequences: 219361 Number of extensions: 841056 Number of successful extensions: 3310 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3062 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3285 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
