ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast64e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483583.1| Oryza sativa (japonica cultivar-group), mRNA 339 5e-90
2dbj|AK120995.1| Oryza sativa (japonica cultivar-group) cDNA clon... 325 8e-86
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
4dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
5dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
7dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
8dbj|AK072458.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
9gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence 44 0.42
10ref|NM_100750.2| Arabidopsis thaliana unknown protein AT1G08760 ... 42 1.7
11gb|AY657162.1| Synthetic construct Peudomonas aeruginosa clone F... 42 1.7
12gb|BC010839.1| Homo sapiens ribophorin I, mRNA (cDNA clone MGC:5... 42 1.7
13gb|DQ148152.1| Macaca mulatta clone ss1_g03_t7_367 ribophorin I ... 42 1.7
14ref|NM_002950.3| Homo sapiens ribophorin I (RPN1), mRNA 42 1.7
15gb|BT010341.1| Arabidopsis thaliana At1g08760 mRNA, complete cds 42 1.7
16emb|CR749284.1| Homo sapiens mRNA; cDNA DKFZp686B16177 (from clo... 42 1.7
17emb|CR621594.1| full-length cDNA clone CS0DK008YB05 of HeLa cell... 42 1.7
18gb|AY099633.1| Arabidopsis thaliana unknown protein (At1g08760) ... 42 1.7
19emb|CR456742.1| Homo sapiens full open reading frame cDNA clone ... 42 1.7
20dbj|AB179364.1| Macaca fascicularis testis cDNA clone: QtsA-1834... 42 1.7
21dbj|AB169814.1| Macaca fascicularis brain cDNA, clone: QccE-2163... 42 1.7
22gb|BC007995.1|BC007995 Homo sapiens, Similar to ribophorin I, cl... 42 1.7
23dbj|AK223595.1| Homo sapiens mRNA for ribophorin I variant, clon... 42 1.7
24gb|AC003981.2|AC003981 Genomic sequence for Arabidopsis thaliana... 42 1.7
25gb|AC079945.21| Homo sapiens 3 BAC RP11-689D3 (Roswell Park Canc... 42 1.7
26gb|AE004513.1| Pseudomonas aeruginosa PAO1, section 74 of 529 of... 42 1.7
27emb|AL449215.3|HS352H24 Homo sapiens chromosome 3 sequence from ... 42 1.7
28emb|Y00281.1|HSRIBIR Human mRNA for ribophorin I 42 1.7
29gb|AC123613.16| Mus musculus chromosome 1, clone RP23-434L2, com... 40 6.6
30gb|AC182587.5| Pan troglodytes BAC clone CH251-207G3 from chromo... 40 6.6
31ref|XM_954783.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.6
32ref|XM_325739.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.6
33gb|AY619640.1| Junin virus strain Rumero segment L, complete seq... 40 6.6
34gb|AC110038.25| Mus musculus chromosome 1, clone RP23-258M15, co... 40 6.6
35gb|AC164304.2| Mus musculus BAC clone RP23-261B24 from chromosom... 40 6.6
36ref|XM_535768.2| PREDICTED: Canis familiaris similar to kalirin,... 40 6.6
37gb|AC137512.2| Mus musculus chromosome 12 clone RP24-323C12, com... 40 6.6
38ref|XM_445053.1| Candida glabrata CBS138, CAGL0B01925g partial mRNA 40 6.6
39gb|AC113481.12| Mus musculus chromosome 12, clone RP23-310G22, c... 40 6.6
40gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 6.6
41emb|AL355333.18| Human DNA sequence from clone RP11-575N15 on ch... 40 6.6
42emb|AL139816.16| Human DNA sequence from clone RP11-309L17 on ch... 40 6.6
43emb|AL133215.17| Human DNA sequence from clone RP11-108L7 on chr... 40 6.6
44emb|AL049738.4|HSJ944N18 Human DNA sequence from clone RP5-944N1... 40 6.6
45emb|AL008720.1|HS343C1 Human DNA sequence from clone CTA-343C1 o... 40 6.6
46emb|CR380948.1| Candida glabrata strain CBS138 chromosome B comp... 40 6.6
47gb|BC082789.1| Mus musculus Smg-7 homolog, nonsense mediated mRN... 40 6.6
48dbj|AK145908.1| Mus musculus 12 days pregnant adult female place... 40 6.6
49ref|NM_001005507.1| Mus musculus Smg-7 homolog, nonsense mediate... 40 6.6
50dbj|AK034680.1| Mus musculus 12 days embryo embryonic body betwe... 40 6.6
51gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 6.6
52ref|XM_341132.2| PREDICTED: Rattus norvegicus similar to chromos... 40 6.6
53dbj|AK129101.1| Mus musculus mRNA for mKIAA0250 protein 40 6.6
54emb|CT571248.10| Mouse DNA sequence from clone RP24-355C16 on ch... 40 6.6
55gb|AC007106.6|AC007106 Homo sapiens chromosome 4 clone C0383J20 ... 40 6.6
56gb|AF013385.1|AF013385 Kyasanur forest disease virus strain W371... 40 6.6
57emb|AL359218.4|CNS05TEG Human chromosome 14 DNA sequence BAC R-5... 40 6.6
58emb|AL163203.2|HS21C003 Homo sapiens chromosome 21 segment HS21C003 40 6.6
59dbj|AP005058.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.6
60dbj|AP001465.1| Homo sapiens genomic DNA, chromosome 21q11.1, cl... 40 6.6
61dbj|AP005213.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.6
62emb|AL626776.15| Mouse DNA sequence from clone RP23-73N17 on chr... 40 6.6 
>ref|XM_483583.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2202

 Score =  339 bits (171), Expect = 5e-90
 Identities = 399/476 (83%), Gaps = 6/476 (1%)
 Strand = Plus / Plus

                                                                        
Query: 3    gagaaagcagcttctgtgttgaaggttactacagctgggaggaagtcctctgcaggcaac 62
            |||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||| |||
Sbjct: 742  gagaaagctgcttctgttttgaaggctactacagcagggaggaagtcctctgcaggtaac 801

                                                                        
Query: 63   tccctaagtaacactctgttaagtcttgaatcgggaccaaaggcgttgagaagaagctgg 122
            |  || ||||||||  ||| |||| |||||||||||||||||||  ||||||||||||||
Sbjct: 802  ttgcttagtaacaccatgtcaagtattgaatcgggaccaaaggccctgagaagaagctgg 861

                                                                        
Query: 123  gaagggaaggcagatgcaaacatcaagggcaattcagattcaaagggagccaaagctgac 182
            |||||||| ||||| ||||| | ||| || |||||||||||||||| ||||||| |||| 
Sbjct: 862  gaagggaatgcagaagcaaagagcaaaggaaattcagattcaaaggcagccaaaactgag 921

                                                                        
Query: 183  aagaagcctgatattagaagcacatcgactcctagacgaaggccgccaccaccagcagat 242
            |||||| |||| | |||||||||||||||||| ||||| |       ||||| || ||| 
Sbjct: 922  aagaagtctgagaatagaagcacatcgactccaagacgca------aaccactagtagaa 975

                                                                        
Query: 243  gagaagccctcacacaaggatgatactaagattcagactcctccaaggaagagcacagca 302
            |||||||| |  || |||||||| | |||||||||||||||||||||||||||| |||||
Sbjct: 976  gagaagccattgcataaggatgacagtaagattcagactcctccaaggaagagctcagca 1035

                                                                        
Query: 303  agtgctccgtcagatgattctgaccgaccggtgaatgagcatctttctcctataagaagg 362
            ||||| || ||||||||||||||   |   |||||| ||| |  ||||||| | || |||
Sbjct: 1036 agtgccccttcagatgattctgagaaaatagtgaataagccttcttctcctttgaggagg 1095

                                                                        
Query: 363  acatctggggttttaagcaacaccaatattacaaatttagtgaagattgctgncaatagc 422
            || ||||| |||| ||||||||| |||||||||||| ||||||||||||||   || |||
Sbjct: 1096 acgtctggagtttcaagcaacacaaatattacaaatctagtgaagattgcttcaaacagc 1155

                                                                    
Query: 423  anaaagttgacggacgcaagcacttcatggacggcacttcctccatcacttgctaa 478
            | ||||||||| || || ||| ||||||||||  |||||||||| |||||||||||
Sbjct: 1156 aaaaagttgacagatgctagcgcttcatggacatcacttcctccttcacttgctaa 1211
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>dbj|AK120995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043P11, full
            insert sequence
          Length = 2885

 Score =  325 bits (164), Expect = 8e-86
 Identities = 399/477 (83%), Gaps = 7/477 (1%)
 Strand = Plus / Plus

                                                                        
Query: 3    gagaaagcagcttctgtgttgaaggttactacagctgggaggaagtcctctgcaggcaac 62
            |||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||| |||
Sbjct: 1133 gagaaagctgcttctgttttgaaggctactacagcagggaggaagtcctctgcaggtaac 1192

                                                                        
Query: 63   tccctaagtaacactctgttaagtcttgaatcgggaccaaaggcgttgagaagaagctgg 122
            |  || ||||||||  ||| |||| |||||||||||||||||||  ||||||||||||||
Sbjct: 1193 ttgcttagtaacaccatgtcaagtattgaatcgggaccaaaggccctgagaagaagctgg 1252

                                                                        
Query: 123  gaagggaaggcagatgcaaacatcaagggcaattcagattcaaagggagccaaagctgac 182
            |||||||| ||||| ||||| | ||| || |||||||||||||||| ||||||| |||| 
Sbjct: 1253 gaagggaatgcagaagcaaagagcaaaggaaattcagattcaaaggcagccaaaactgag 1312

                                                                        
Query: 183  aagaagcctgatattagaagcacatcgactcctagacgaaggccgccaccaccagcagat 242
            |||||| |||| | |||||||||||||||||| ||||| |       ||||| || ||| 
Sbjct: 1313 aagaagtctgagaatagaagcacatcgactccaagacgca------aaccactagtagaa 1366

                                                                        
Query: 243  gagaagccctcacacaaggatgatactaagattcagactcctccaaggaagagcacagca 302
            |||||||| |  || |||||||| | |||||||||||||||||||||||||||| |||||
Sbjct: 1367 gagaagccattgcataaggatgacagtaagattcagactcctccaaggaagagctcagca 1426

                                                                        
Query: 303  agtg-ctccgtcagatgattctgaccgaccggtgaatgagcatctttctcctataagaag 361
            |||| | || ||||||||||||||   |   |||||| ||| |  ||||||| | || ||
Sbjct: 1427 agtgcccccttcagatgattctgagaaaatagtgaataagccttcttctcctttgaggag 1486

                                                                        
Query: 362  gacatctggggttttaagcaacaccaatattacaaatttagtgaagattgctgncaatag 421
            ||| ||||| |||| ||||||||| |||||||||||| ||||||||||||||   || ||
Sbjct: 1487 gacgtctggagtttcaagcaacacaaatattacaaatctagtgaagattgcttcaaacag 1546

                                                                     
Query: 422  canaaagttgacggacgcaagcacttcatggacggcacttcctccatcacttgctaa 478
            || ||||||||| || || ||| ||||||||||  |||||||||| |||||||||||
Sbjct: 1547 caaaaagttgacagatgctagcgcttcatggacatcacttcctccttcacttgctaa 1603
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  204 bits (103), Expect = 2e-49
 Identities = 181/207 (87%)
 Strand = Plus / Minus

                                                                            
Query: 3        gagaaagcagcttctgtgttgaaggttactacagctgggaggaagtcctctgcaggcaac 62
                |||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||| |||
Sbjct: 27100078 gagaaagctgcttctgttttgaaggctactacagcagggaggaagtcctctgcaggtaac 27100019

                                                                            
Query: 63       tccctaagtaacactctgttaagtcttgaatcgggaccaaaggcgttgagaagaagctgg 122
                |  || ||||||||  ||| |||| |||||||||||||||||||  ||||||||||||||
Sbjct: 27100018 ttgcttagtaacaccatgtcaagtattgaatcgggaccaaaggccctgagaagaagctgg 27099959

                                                                            
Query: 123      gaagggaaggcagatgcaaacatcaagggcaattcagattcaaagggagccaaagctgac 182
                |||||||| ||||| ||||| | ||| || |||||||||||||||| ||||||| |||| 
Sbjct: 27099958 gaagggaatgcagaagcaaagagcaaaggaaattcagattcaaaggcagccaaaactgag 27099899

                                           
Query: 183      aagaagcctgatattagaagcacatcg 209
                |||||| |||| | |||||||||||||
Sbjct: 27099898 aagaagtctgagaatagaagcacatcg 27099872



 Score =  165 bits (83), Expect = 2e-37
 Identities = 186/221 (84%)
 Strand = Plus / Minus

                                                                            
Query: 258      aaggatgatactaagattcagactcctccaaggaagagcacagcaagtgctccgtcagat 317
                |||||||| | |||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct: 27099612 aaggatgacagtaagattcagactcctccaaggaagagctcagcaagtgccccttcagat 27099553

                                                                            
Query: 318      gattctgaccgaccggtgaatgagcatctttctcctataagaaggacatctggggtttta 377
                ||||||||   |   |||||| ||| |  ||||||| | || ||||| ||||| |||| |
Sbjct: 27099552 gattctgagaaaatagtgaataagccttcttctcctttgaggaggacgtctggagtttca 27099493

                                                                            
Query: 378      agcaacaccaatattacaaatttagtgaagattgctgncaatagcanaaagttgacggac 437
                |||||||| |||||||||||| ||||||||||||||   || |||| ||||||||| || 
Sbjct: 27099492 agcaacacaaatattacaaatctagtgaagattgcttcaaacagcaaaaagttgacagat 27099433

                                                         
Query: 438      gcaagcacttcatggacggcacttcctccatcacttgctaa 478
                || ||| ||||||||||  |||||||||| |||||||||||
Sbjct: 27099432 gctagcgcttcatggacatcacttcctccttcacttgctaa 27099392
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>dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1521_G02
          Length = 117964

 Score =  204 bits (103), Expect = 2e-49
 Identities = 181/207 (87%)
 Strand = Plus / Minus

                                                                        
Query: 3    gagaaagcagcttctgtgttgaaggttactacagctgggaggaagtcctctgcaggcaac 62
            |||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||| |||
Sbjct: 1111 gagaaagctgcttctgttttgaaggctactacagcagggaggaagtcctctgcaggtaac 1052

                                                                        
Query: 63   tccctaagtaacactctgttaagtcttgaatcgggaccaaaggcgttgagaagaagctgg 122
            |  || ||||||||  ||| |||| |||||||||||||||||||  ||||||||||||||
Sbjct: 1051 ttgcttagtaacaccatgtcaagtattgaatcgggaccaaaggccctgagaagaagctgg 992

                                                                        
Query: 123  gaagggaaggcagatgcaaacatcaagggcaattcagattcaaagggagccaaagctgac 182
            |||||||| ||||| ||||| | ||| || |||||||||||||||| ||||||| |||| 
Sbjct: 991  gaagggaatgcagaagcaaagagcaaaggaaattcagattcaaaggcagccaaaactgag 932

                                       
Query: 183  aagaagcctgatattagaagcacatcg 209
            |||||| |||| | |||||||||||||
Sbjct: 931  aagaagtctgagaatagaagcacatcg 905



 Score =  165 bits (83), Expect = 2e-37
 Identities = 186/221 (84%)
 Strand = Plus / Minus

                                                                       
Query: 258 aaggatgatactaagattcagactcctccaaggaagagcacagcaagtgctccgtcagat 317
           |||||||| | |||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct: 645 aaggatgacagtaagattcagactcctccaaggaagagctcagcaagtgccccttcagat 586

                                                                       
Query: 318 gattctgaccgaccggtgaatgagcatctttctcctataagaaggacatctggggtttta 377
           ||||||||   |   |||||| ||| |  ||||||| | || ||||| ||||| |||| |
Sbjct: 585 gattctgagaaaatagtgaataagccttcttctcctttgaggaggacgtctggagtttca 526

                                                                       
Query: 378 agcaacaccaatattacaaatttagtgaagattgctgncaatagcanaaagttgacggac 437
           |||||||| |||||||||||| ||||||||||||||   || |||| ||||||||| || 
Sbjct: 525 agcaacacaaatattacaaatctagtgaagattgcttcaaacagcaaaaagttgacagat 466

                                                    
Query: 438 gcaagcacttcatggacggcacttcctccatcacttgctaa 478
           || ||| ||||||||||  |||||||||| |||||||||||
Sbjct: 465 gctagcgcttcatggacatcacttcctccttcacttgctaa 425
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>dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1211_G06
          Length = 96421

 Score =  204 bits (103), Expect = 2e-49
 Identities = 181/207 (87%)
 Strand = Plus / Minus

                                                                         
Query: 3     gagaaagcagcttctgtgttgaaggttactacagctgggaggaagtcctctgcaggcaac 62
             |||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||| |||
Sbjct: 71165 gagaaagctgcttctgttttgaaggctactacagcagggaggaagtcctctgcaggtaac 71106

                                                                         
Query: 63    tccctaagtaacactctgttaagtcttgaatcgggaccaaaggcgttgagaagaagctgg 122
             |  || ||||||||  ||| |||| |||||||||||||||||||  ||||||||||||||
Sbjct: 71105 ttgcttagtaacaccatgtcaagtattgaatcgggaccaaaggccctgagaagaagctgg 71046

                                                                         
Query: 123   gaagggaaggcagatgcaaacatcaagggcaattcagattcaaagggagccaaagctgac 182
             |||||||| ||||| ||||| | ||| || |||||||||||||||| ||||||| |||| 
Sbjct: 71045 gaagggaatgcagaagcaaagagcaaaggaaattcagattcaaaggcagccaaaactgag 70986

                                        
Query: 183   aagaagcctgatattagaagcacatcg 209
             |||||| |||| | |||||||||||||
Sbjct: 70985 aagaagtctgagaatagaagcacatcg 70959



 Score =  165 bits (83), Expect = 2e-37
 Identities = 186/221 (84%)
 Strand = Plus / Minus

                                                                         
Query: 258   aaggatgatactaagattcagactcctccaaggaagagcacagcaagtgctccgtcagat 317
             |||||||| | |||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct: 70699 aaggatgacagtaagattcagactcctccaaggaagagctcagcaagtgccccttcagat 70640

                                                                         
Query: 318   gattctgaccgaccggtgaatgagcatctttctcctataagaaggacatctggggtttta 377
             ||||||||   |   |||||| ||| |  ||||||| | || ||||| ||||| |||| |
Sbjct: 70639 gattctgagaaaatagtgaataagccttcttctcctttgaggaggacgtctggagtttca 70580

                                                                         
Query: 378   agcaacaccaatattacaaatttagtgaagattgctgncaatagcanaaagttgacggac 437
             |||||||| |||||||||||| ||||||||||||||   || |||| ||||||||| || 
Sbjct: 70579 agcaacacaaatattacaaatctagtgaagattgcttcaaacagcaaaaagttgacagat 70520

                                                      
Query: 438   gcaagcacttcatggacggcacttcctccatcacttgctaa 478
             || ||| ||||||||||  |||||||||| |||||||||||
Sbjct: 70519 gctagcgcttcatggacatcacttcctccttcacttgctaa 70479
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 9        gcagcttctgtgttgaaggttactacagctgggaggaagtcctctgcagg 58
                |||||||| || ||||||||||| || || ||||||||||||||||||||
Sbjct: 19836995 gcagcttccgttttgaaggttacaacggcagggaggaagtcctctgcagg 19836946



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 102      aaggcgttgagaagaagctgggaagggaagg 132
                ||||| |||||||||||||||||||| ||||
Sbjct: 19836908 aaggcattgagaagaagctgggaaggaaagg 19836878
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>dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0034B12
          Length = 124083

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 9     gcagcttctgtgttgaaggttactacagctgggaggaagtcctctgcagg 58
             |||||||| || ||||||||||| || || ||||||||||||||||||||
Sbjct: 61435 gcagcttccgttttgaaggttacaacggcagggaggaagtcctctgcagg 61386



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 102   aaggcgttgagaagaagctgggaagggaagg 132
             ||||| |||||||||||||||||||| ||||
Sbjct: 61348 aaggcattgagaagaagctgggaaggaaagg 61318
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>dbj|AK072458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121E21, full
            insert sequence
          Length = 4525

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 9    gcagcttctgtgttgaaggttactacagctgggaggaagtcctctgcagg 58
            |||||||| || ||||||||||| || || ||||||||||||||||||||
Sbjct: 1252 gcagcttccgttttgaaggttacaacggcagggaggaagtcctctgcagg 1301



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 102  aaggcgttgagaagaagctgggaagggaagg 132
            ||||| |||||||||||||||||||| ||||
Sbjct: 1339 aaggcattgagaagaagctgggaaggaaagg 1369
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>gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence
          Length = 181705

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 459    cttcctccatcacttgctaatt 480
              ||||||||||||||||||||||
Sbjct: 102136 cttcctccatcacttgctaatt 102157
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>ref|NM_100750.2| Arabidopsis thaliana unknown protein AT1G08760 mRNA, complete cds
          Length = 2566

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 102  aaggcgttgagaagaagctgggaagggaa 130
            ||||||||||| | |||||||||||||||
Sbjct: 987  aaggcgttgaggaaaagctgggaagggaa 1015
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>gb|AY657162.1| Synthetic construct Peudomonas aeruginosa clone FLH032150.01F
           PA0786 gene, partial cds
          Length = 306

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 219 cgaaggccgccaccaccagcagatg 243
           ||||||||||| |||||||||||||
Sbjct: 37  cgaaggccgccgccaccagcagatg 13
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>gb|BC010839.1| Homo sapiens ribophorin I, mRNA (cDNA clone MGC:5072 IMAGE:3461167),
            complete cds
          Length = 2334

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 220  gaaggccgccaccaccagcag 240
            |||||||||||||||||||||
Sbjct: 1375 gaaggccgccaccaccagcag 1355
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>gb|DQ148152.1| Macaca mulatta clone ss1_g03_t7_367 ribophorin I (RPN1) mRNA,
           partial cds
          Length = 427

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 220 gaaggccgccaccaccagcag 240
           |||||||||||||||||||||
Sbjct: 264 gaaggccgccaccaccagcag 244
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>ref|NM_002950.3| Homo sapiens ribophorin I (RPN1), mRNA
          Length = 2372

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 220  gaaggccgccaccaccagcag 240
            |||||||||||||||||||||
Sbjct: 1414 gaaggccgccaccaccagcag 1394
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>gb|BT010341.1| Arabidopsis thaliana At1g08760 mRNA, complete cds
          Length = 2247

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 102 aaggcgttgagaagaagctgggaagggaa 130
           ||||||||||| | |||||||||||||||
Sbjct: 880 aaggcgttgaggaaaagctgggaagggaa 908
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>emb|CR749284.1| Homo sapiens mRNA; cDNA DKFZp686B16177 (from clone DKFZp686B16177)
          Length = 2346

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 220  gaaggccgccaccaccagcag 240
            |||||||||||||||||||||
Sbjct: 1368 gaaggccgccaccaccagcag 1348
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>emb|CR621594.1| full-length cDNA clone CS0DK008YB05 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1607

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 220 gaaggccgccaccaccagcag 240
           |||||||||||||||||||||
Sbjct: 708 gaaggccgccaccaccagcag 688
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>gb|AY099633.1| Arabidopsis thaliana unknown protein (At1g08760) mRNA, complete cds
          Length = 2567

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 102  aaggcgttgagaagaagctgggaagggaa 130
            ||||||||||| | |||||||||||||||
Sbjct: 987  aaggcgttgaggaaaagctgggaagggaa 1015
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>emb|CR456742.1| Homo sapiens full open reading frame cDNA clone RZPDo834H0114D for
            gene RPN1, ribophorin I; complete cds, incl. stopcodon
          Length = 1824

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 220  gaaggccgccaccaccagcag 240
            |||||||||||||||||||||
Sbjct: 1338 gaaggccgccaccaccagcag 1318
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>dbj|AB179364.1| Macaca fascicularis testis cDNA clone: QtsA-18349, similar to human
            ribophorin I (RPN1), mRNA, RefSeq: NM_002950.2
          Length = 2192

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 220  gaaggccgccaccaccagcag 240
            |||||||||||||||||||||
Sbjct: 1402 gaaggccgccaccaccagcag 1382
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>dbj|AB169814.1| Macaca fascicularis brain cDNA, clone: QccE-21639, similar to human
            ribophorin I (RPN1), mRNA, RefSeq: NM_002950.2
          Length = 2053

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 220  gaaggccgccaccaccagcag 240
            |||||||||||||||||||||
Sbjct: 1351 gaaggccgccaccaccagcag 1331
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>gb|BC007995.1|BC007995 Homo sapiens, Similar to ribophorin I, clone IMAGE:3609303, mRNA,
            partial cds
          Length = 1994

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 220  gaaggccgccaccaccagcag 240
            |||||||||||||||||||||
Sbjct: 1221 gaaggccgccaccaccagcag 1201
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>dbj|AK223595.1| Homo sapiens mRNA for ribophorin I variant, clone: FCC131A08
          Length = 2339

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 220  gaaggccgccaccaccagcag 240
            |||||||||||||||||||||
Sbjct: 1387 gaaggccgccaccaccagcag 1367
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>gb|AC003981.2|AC003981 Genomic sequence for Arabidopsis thaliana BAC F22O13 from chromosome I,
              complete sequence
          Length = 133843

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 102    aaggcgttgagaagaagctgggaagggaa 130
              ||||||||||| | |||||||||||||||
Sbjct: 104282 aaggcgttgaggaaaagctgggaagggaa 104310
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>gb|AC079945.21| Homo sapiens 3 BAC RP11-689D3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 149249

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 220    gaaggccgccaccaccagcag 240
              |||||||||||||||||||||
Sbjct: 123992 gaaggccgccaccaccagcag 123972
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>gb|AE004513.1| Pseudomonas aeruginosa PAO1, section 74 of 529 of the complete genome
          Length = 15470

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 219   cgaaggccgccaccaccagcagatg 243
             ||||||||||| |||||||||||||
Sbjct: 10425 cgaaggccgccgccaccagcagatg 10401
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>emb|AL449215.3|HS352H24 Homo sapiens chromosome 3 sequence from BAC 352H24 map 3q21 region
             D3S3607-D3S1587, complete sequence
          Length = 134296

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 220   gaaggccgccaccaccagcag 240
             |||||||||||||||||||||
Sbjct: 23214 gaaggccgccaccaccagcag 23234
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>emb|Y00281.1|HSRIBIR Human mRNA for ribophorin I
          Length = 2397

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 220  gaaggccgccaccaccagcag 240
            |||||||||||||||||||||
Sbjct: 1475 gaaggccgccaccaccagcag 1455
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>gb|AC123613.16| Mus musculus chromosome 1, clone RP23-434L2, complete sequence
          Length = 204785

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 115    gaagctgggaagggaaggcagatg 138
              ||||||| ||||||||||||||||
Sbjct: 201886 gaagctgagaagggaaggcagatg 201863
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>gb|AC182587.5| Pan troglodytes BAC clone CH251-207G3 from chromosome 18, complete
              sequence
          Length = 195115

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    atactaagattcagactcct 284
              ||||||||||||||||||||
Sbjct: 107807 atactaagattcagactcct 107788
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>ref|XM_954783.1| Neurospora crassa OR74A hypothetical protein (NCU05885.1) partial
            mRNA
          Length = 1914

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  gaagctgggaagggaaggca 134
            ||||||||||||||||||||
Sbjct: 1527 gaagctgggaagggaaggca 1546
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>ref|XM_325739.1| Neurospora crassa OR74A hypothetical protein (NCU05885.1) partial
            mRNA
          Length = 1914

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  gaagctgggaagggaaggca 134
            ||||||||||||||||||||
Sbjct: 1527 gaagctgggaagggaaggca 1546
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>gb|AY619640.1| Junin virus strain Rumero segment L, complete sequence
          Length = 7113

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 146 caagggcaattcagattcaaaggg 169
           ||||||||||||||||| ||||||
Sbjct: 525 caagggcaattcagattaaaaggg 502
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>gb|AC110038.25| Mus musculus chromosome 1, clone RP23-258M15, complete sequence
          Length = 232830

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 115  gaagctgggaagggaaggcagatg 138
            ||||||| ||||||||||||||||
Sbjct: 4383 gaagctgagaagggaaggcagatg 4360
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>gb|AC164304.2| Mus musculus BAC clone RP23-261B24 from chromosome 14, complete
             sequence
          Length = 184690

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   ctcctccaaggaagagcaca 299
             ||||||||||||||||||||
Sbjct: 56865 ctcctccaaggaagagcaca 56884
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>ref|XM_535768.2| PREDICTED: Canis familiaris similar to kalirin, RhoGEF kinase isoform
            1 (LOC478592), mRNA
          Length = 9030

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 126  gggaaggcagatgcaaacatcaag 149
            ||||||||||||| ||||||||||
Sbjct: 5407 gggaaggcagatggaaacatcaag 5430
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>gb|AC137512.2| Mus musculus chromosome 12 clone RP24-323C12, complete sequence
          Length = 164776

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 281  tcctccaaggaagagcacag 300
            ||||||||||||||||||||
Sbjct: 6157 tcctccaaggaagagcacag 6138
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>ref|XM_445053.1| Candida glabrata CBS138, CAGL0B01925g partial mRNA
          Length = 2835

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 ccaccaccagcagatgagaa 247
           ||||||||||||||||||||
Sbjct: 337 ccaccaccagcagatgagaa 356
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>gb|AC113481.12| Mus musculus chromosome 12, clone RP23-310G22, complete sequence
          Length = 199650

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 281  tcctccaaggaagagcacag 300
            ||||||||||||||||||||
Sbjct: 1797 tcctccaaggaagagcacag 1816
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 217     gacgaaggccgccaccaccagcag 240
               ||||||||||||||||| ||||||
Sbjct: 3849505 gacgaaggccgccaccagcagcag 3849528
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>emb|AL355333.18| Human DNA sequence from clone RP11-575N15 on chromosome 10, complete
              sequence
          Length = 180545

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 126    gggaaggcagatgcaaacatcaag 149
              |||||||||||||| |||||||||
Sbjct: 134099 gggaaggcagatgctaacatcaag 134122
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>emb|AL139816.16| Human DNA sequence from clone RP11-309L17 on chromosome 10, complete
             sequence
          Length = 29331

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    gaggaagtcctctgcaggca 60
             ||||||||||||||||||||
Sbjct: 18762 gaggaagtcctctgcaggca 18743
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>emb|AL133215.17| Human DNA sequence from clone RP11-108L7 on chromosome 10 Contains the
             3' end of the C10orf6 gene for chromosome 10 open reading
             frame 6, the SEMA4G gene for sema domain immunoglobulin
             domain (Ig) transmembrane domain (TM) and short
             cytoplasmic domain (semaphorin) 4G, the MRPL43 gene for
             mitochondrial ribosomal protein L43, the C10orf2 gene for
             chromosome 10 open reading frame 2, the gene for a novel
             protein (KIAA1813) (LAPSER1), a novel gene, the gene for a
             novel protein (FLJ23209 FLJ00011), the gene for a novel
             tricarboxylate carrier domain containing protein (FLJ34185
             FLJ35692), the gene for a novel kazal-type serine protease
             inhibitor domain and immunoglobulin domain containing
             protein (FKSG28) (FKSG4), the 3' end of a novel gene and
             six CpG islands, complete sequence
          Length = 181086

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   gaagctgggaagggaaggca 134
             ||||||||||||||||||||
Sbjct: 41851 gaagctgggaagggaaggca 41870
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>emb|AL049738.4|HSJ944N18 Human DNA sequence from clone RP5-944N18 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 122383

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   gttgagaagaagctgggaag 126
             ||||||||||||||||||||
Sbjct: 49290 gttgagaagaagctgggaag 49271
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>emb|AL008720.1|HS343C1 Human DNA sequence from clone CTA-343C1 on chromosome 22, complete
              sequence
          Length = 198570

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      tggagaaagcagcttctgtg 20
              ||||||||||||||||||||
Sbjct: 156562 tggagaaagcagcttctgtg 156543
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>emb|CR380948.1| Candida glabrata strain CBS138 chromosome B complete sequence
          Length = 502101

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    ccaccaccagcagatgagaa 247
              ||||||||||||||||||||
Sbjct: 176652 ccaccaccagcagatgagaa 176671
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>gb|BC082789.1| Mus musculus Smg-7 homolog, nonsense mediated mRNA decay factor (C.
            elegans), mRNA (cDNA clone MGC:91209 IMAGE:30105222),
            complete cds
          Length = 5840

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 115  gaagctgggaagggaaggcagatg 138
            ||||||| ||||||||||||||||
Sbjct: 3815 gaagctgagaagggaaggcagatg 3838
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>dbj|AK145908.1| Mus musculus 12 days pregnant adult female placenta cDNA, RIKEN
            full-length enriched library, clone:I530014C15
            product:hypothetical Glutamine-rich region
            profile/Serine-rich region profile containing protein,
            full insert sequence
          Length = 3429

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 115  gaagctgggaagggaaggcagatg 138
            ||||||| ||||||||||||||||
Sbjct: 1569 gaagctgagaagggaaggcagatg 1592
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>ref|NM_001005507.1| Mus musculus Smg-7 homolog, nonsense mediated mRNA decay factor (C.
            elegans) (Smg7), mRNA
          Length = 5840

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 115  gaagctgggaagggaaggcagatg 138
            ||||||| ||||||||||||||||
Sbjct: 3815 gaagctgagaagggaaggcagatg 3838
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>dbj|AK034680.1| Mus musculus 12 days embryo embryonic body between diaphragm region
           and neck cDNA, RIKEN full-length enriched library,
           clone:9430023P16 product:unclassifiable, full insert
           sequence
          Length = 2013

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 115 gaagctgggaagggaaggcagatg 138
           ||||||| ||||||||||||||||
Sbjct: 152 gaagctgagaagggaaggcagatg 175
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 371     ggttttaagcaacaccaata 390
               ||||||||||||||||||||
Sbjct: 4176674 ggttttaagcaacaccaata 4176693
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>ref|XM_341132.2| PREDICTED: Rattus norvegicus similar to chromosome 1 open reading
            frame 16 (predicted) (LOC360855), mRNA
          Length = 6649

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 115  gaagctgggaagggaaggcagatg 138
            ||||||| ||||||||||||||||
Sbjct: 4693 gaagctgagaagggaaggcagatg 4716
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>dbj|AK129101.1| Mus musculus mRNA for mKIAA0250 protein
          Length = 5792

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 115  gaagctgggaagggaaggcagatg 138
            ||||||| ||||||||||||||||
Sbjct: 3830 gaagctgagaagggaaggcagatg 3853
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>emb|CT571248.10| Mouse DNA sequence from clone RP24-355C16 on chromosome 16, complete
             sequence
          Length = 136128

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   agattcaaagggagccaaag 177
             ||||||||||||||||||||
Sbjct: 48520 agattcaaagggagccaaag 48539
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>gb|AC007106.6|AC007106 Homo sapiens chromosome 4 clone C0383J20 map 4p16, complete sequence
          Length = 172188

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 65     cctaagtaacactctgttaagtct 88
              ||||| ||||||||||||||||||
Sbjct: 158531 cctaactaacactctgttaagtct 158554
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>gb|AF013385.1|AF013385 Kyasanur forest disease virus strain W371 NS5 protein (NS5) gene,
           partial cds
          Length = 1026

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 23  gaaggttactacagctgggaggaagtcc 50
           |||||||||| |||||||||||| ||||
Sbjct: 712 gaaggttactccagctgggaggaggtcc 739
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>emb|AL359218.4|CNS05TEG Human chromosome 14 DNA sequence BAC R-55G7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 160718

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    atactaagattcagactcct 284
              ||||||||||||||||||||
Sbjct: 110708 atactaagattcagactcct 110727
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>emb|AL163203.2|HS21C003 Homo sapiens chromosome 21 segment HS21C003
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    atactaagattcagactcct 284
              ||||||||||||||||||||
Sbjct: 238717 atactaagattcagactcct 238736
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>dbj|AP005058.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-19M12, complete
             sequence
          Length = 179546

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   atactaagattcagactcct 284
             ||||||||||||||||||||
Sbjct: 64952 atactaagattcagactcct 64933
to top
>dbj|AP001465.1| Homo sapiens genomic DNA, chromosome 21q11.1, clone:B663H15,
            centromere region, complete sequence
          Length = 104785

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 265  atactaagattcagactcct 284
            ||||||||||||||||||||
Sbjct: 1202 atactaagattcagactcct 1221
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>dbj|AP005213.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-97O24, complete
            sequence
          Length = 162364

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 265  atactaagattcagactcct 284
            ||||||||||||||||||||
Sbjct: 1846 atactaagattcagactcct 1827
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>emb|AL626776.15| Mouse DNA sequence from clone RP23-73N17 on chromosome 4, complete
              sequence
          Length = 144486

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    ccaccaccagcagatgagaa 247
              ||||||||||||||||||||
Sbjct: 107372 ccaccaccagcagatgagaa 107353


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,474,024
Number of Sequences: 3902068
Number of extensions: 4474024
Number of successful extensions: 89200
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88997
Number of HSP's gapped (non-prelim): 202
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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