ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast64e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transfe... 593 e-166
2dbj|D16457.1|WHTEXT4 Wheat mRNA for endo-xyloglucan transferase,... 307 1e-80
3gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome... 202 5e-49
4gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome... 202 5e-49
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 202 5e-49
6dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 5e-49
7dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 5e-49
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 202 5e-49
9gb|AY104207.1| Zea mays PCO111099 mRNA sequence 172 4e-40
10gb|AC159810.2| Mus musculus BAC clone RP24-94A19 from chromosome... 46 0.069
11emb|CR711857.2|CNS0GC7X Tetraodon nigroviridis full-length cDNA 44 0.27
12emb|CR718189.2|CNS0GH3N Tetraodon nigroviridis full-length cDNA 44 0.27
13dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.27
14gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.27
15emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb... 44 0.27
16gb|AC108758.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
17gb|AC132391.3| Mus musculus BAC clone RP23-454N21 from chromosom... 42 1.1
18gb|AC151992.3| Mus musculus BAC clone RP23-212H13 from chromosom... 42 1.1
19emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete ... 42 1.1
20gb|AE005709.1| Caulobacter crescentus CB15 section 35 of 359 of ... 42 1.1
21dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
22gb|AC157949.1| Mus musculus BAC clone RP23-148A16 from chromosom... 42 1.1
23dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 42 1.1
24emb|Z60540.1|HS27G11R H.sapiens CpG island DNA genomic Mse1 frag... 42 1.1
25dbj|AP001858.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 1.1
26gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 1.1
27gb|AC134606.4| Mus musculus BAC clone RP23-52K6 from 9, complete... 42 1.1
28ref|NM_188932.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.2
29ref|XM_958677.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.2
30ref|XM_327761.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.2
31gb|AC146238.2| Pan troglodytes BAC clone CH251-170A15 from Y, co... 40 4.2
32gb|AC120408.7| Mus musculus chromosome 5, clone RP24-433N14, com... 40 4.2
33gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.2
34gb|AC154710.2| Mus musculus BAC clone RP24-357L12 from chromosom... 40 4.2
35gb|AC005247.2| Homo sapiens PAC clone RP4-740L10 from 7, complet... 40 4.2
36gb|AC159294.2| Mus musculus BAC clone RP23-287I15 from chromosom... 40 4.2
37gb|AC069067.17| Homo sapiens 3 BAC RP11-454C18 (Roswell Park Can... 40 4.2
38ref|NM_001030710.1| Gallus gallus similar to MGC68830 protein (L... 40 4.2
39ref|NM_001015912.1| Xenopus tropicalis CDC37 cell division cycle... 40 4.2
40emb|BX323026.5| Mouse DNA sequence from clone RP24-95F14 on chro... 40 4.2
41emb|AL645973.8| Mouse DNA sequence from clone RP23-287B6 on chro... 40 4.2
42emb|AJ719622.1| Gallus gallus mRNA for hypothetical protein, clo... 40 4.2
43dbj|BS000585.1| Pan troglodytes chromosome Y clone:PTB-582H02, c... 40 4.2
44gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 4.2
45gb|AC105401.5| Homo sapiens BAC clone RP11-765K14 from 4, comple... 40 4.2
46gb|AC087258.14| Homo sapiens 12p BAC RP11-686N4 (Roswell Park Ca... 40 4.2
47emb|CR522991.1| Gallus gallus finished cDNA, clone ChEST799i23 40 4.2
48gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genom... 40 4.2
49gb|AC123660.8| Mus musculus chromosome 3, clone RP23-196E24, com... 40 4.2
50gb|AC017016.5|AC017016 Homo sapiens BAC clone RP11-152H13 from 3... 40 4.2
51gb|AC006435.7|AC006435 Homo sapiens chromosome 17, clone RP5-59D... 40 4.2
52dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
53dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
54gb|AC010972.3|AC010972 Homo sapiens clone RP11-133D3, complete s... 40 4.2
55gb|AC147710.3| Pan troglodytes BAC clone CH251-473C15 from chrom... 40 4.2
56gb|AC112666.9| Mus musculus chromosome 3, clone RP24-119D5, comp... 40 4.2
57gb|AC015799.23| Homo sapiens chromosome 17, clone RP11-135N5, co... 40 4.2
58dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
59dbj|AK068398.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
60emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 4.2
61emb|CR926424.1| Xenopus tropicalis finished cDNA, clone TGas127m02 40 4.2
62gb|AC159104.2| Mus musculus BAC clone RP23-246E2 from chromosome... 40 4.2
63gb|AC154246.3| Mus musculus BAC clone RP24-329G5 from chromosome... 40 4.2
64gb|AC111084.12| Mus musculus chromosome 7, clone RP23-143J24, co... 40 4.2
65gb|AC105298.21| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 4.2
66gb|AC141560.4| Mus musculus BAC clone RP23-425A5 from 12, comple... 40 4.2
67emb|CT010516.6| Mouse DNA sequence from clone RP23-276H24 on chr... 40 4.2
68gb|AC134670.3| Homo sapiens chromosome 17, clone CTD-2283G11, co... 40 4.2 
>emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transferase
          Length = 1175

 Score =  593 bits (299), Expect = e-166
 Identities = 299/299 (100%)
 Strand = Plus / Plus

                                                                       
Query: 23  ctcggccattgtttctagtagtactagccaagccattgtttctagaagtaacagaggagg 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctcggccattgtttctagtagtactagccaagccattgtttctagaagtaacagaggagg 60

                                                                       
Query: 83  aggaagagaggccggcgaaatgaaggctaccgcgggggccctcctcgccgtggtggccac 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aggaagagaggccggcgaaatgaaggctaccgcgggggccctcctcgccgtggtggccac 120

                                                                       
Query: 143 ggtgctactgcgaggcatcgcggcagcgccgccccggaagccggtggacgtgccattcga 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtgctactgcgaggcatcgcggcagcgccgccccggaagccggtggacgtgccattcga 180

                                                                       
Query: 203 gaagaactacgtcccgacatgggcggaggaccacatccactacgtgaacggcggacggga 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaagaactacgtcccgacatgggcggaggaccacatccactacgtgaacggcggacggga 240

                                                                      
Query: 263 ggtgcagctgtccctcgacaagaccaccggcactggcttccagacccggggctcctacc 321
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggtgcagctgtccctcgacaagaccaccggcactggcttccagacccggggctcctacc 299
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>dbj|D16457.1|WHTEXT4 Wheat mRNA for endo-xyloglucan transferase, complete cds
          Length = 1088

 Score =  307 bits (155), Expect = 1e-80
 Identities = 230/254 (90%), Gaps = 7/254 (2%)
 Strand = Plus / Plus

                                                                       
Query: 72  aacagaggaggaggaagagaggccggc----gaaatgaaggctaccgcgggggccctcct 127
           ||||||| |||||||||||||||||||    ||||||||||| |||||||||||||||||
Sbjct: 10  aacagagaaggaggaagagaggccggccggcgaaatgaaggcgaccgcgggggccctcct 69

                                                                       
Query: 128 cgccgtggtggccacggtgctactgcgaggcatcgcggcagcgccgccccggaagccggt 187
           ||||||||||||  ||||||| || || ||| | |||||||||||   ||||||||||||
Sbjct: 70  cgccgtggtggcggcggtgctgctacgcggcgtggcggcagcgcc---ccggaagccggt 126

                                                                       
Query: 188 ggacgtgccattcgagaagaactacgtcccgacatgggcggaggaccacatccactacgt 247
           ||||||||| ||||| ||||||||||| ||||| |||||| |||||||||||||||||||
Sbjct: 127 ggacgtgccgttcgacaagaactacgtgccgacgtgggcgcaggaccacatccactacgt 186

                                                                       
Query: 248 gaacggcggacgggaggtgcagctgtccctcgacaagaccaccggcactggcttccagac 307
           ||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 187 gaacggcgggcgggaggtgcagctgtccctggacaagaccaccggcacgggcttccagac 246

                         
Query: 308 ccggggctcctacc 321
           ||||||||||||||
Sbjct: 247 ccggggctcctacc 260
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>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17,
              complete sequence
          Length = 148829

 Score =  202 bits (102), Expect = 5e-49
 Identities = 138/150 (92%)
 Strand = Plus / Plus

                                                                          
Query: 172    cgccccggaagccggtggacgtgccattcgagaagaactacgtcccgacatgggcggagg 231
              |||| |||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||
Sbjct: 113137 cgccgcggaagccggtggacgtggcgttcgagaagaactacgtgccgacgtgggcggagg 113196

                                                                          
Query: 232    accacatccactacgtgaacggcggacgggaggtgcagctgtccctcgacaagaccaccg 291
              ||||||||||||||||| ||||||| || ||||||||||| | |||||||||| ||||||
Sbjct: 113197 accacatccactacgtggacggcgggcgcgaggtgcagctctacctcgacaagtccaccg 113256

                                            
Query: 292    gcactggcttccagacccggggctcctacc 321
              |||| |||||||||||||||||||||||||
Sbjct: 113257 gcaccggcttccagacccggggctcctacc 113286
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>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0007D07, complete sequence
          Length = 133930

 Score =  202 bits (102), Expect = 5e-49
 Identities = 138/150 (92%)
 Strand = Plus / Plus

                                                                         
Query: 172   cgccccggaagccggtggacgtgccattcgagaagaactacgtcccgacatgggcggagg 231
             |||| |||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||
Sbjct: 12756 cgccgcggaagccggtggacgtggcgttcgagaagaactacgtgccgacgtgggcggagg 12815

                                                                         
Query: 232   accacatccactacgtgaacggcggacgggaggtgcagctgtccctcgacaagaccaccg 291
             ||||||||||||||||| ||||||| || ||||||||||| | |||||||||| ||||||
Sbjct: 12816 accacatccactacgtggacggcgggcgcgaggtgcagctctacctcgacaagtccaccg 12875

                                           
Query: 292   gcactggcttccagacccggggctcctacc 321
             |||| |||||||||||||||||||||||||
Sbjct: 12876 gcaccggcttccagacccggggctcctacc 12905
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  202 bits (102), Expect = 5e-49
 Identities = 138/150 (92%)
 Strand = Plus / Plus

                                                                            
Query: 172      cgccccggaagccggtggacgtgccattcgagaagaactacgtcccgacatgggcggagg 231
                |||| |||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||
Sbjct: 19009939 cgccgcggaagccggtggacgtggcgttcgagaagaactacgtgccgacgtgggcggagg 19009998

                                                                            
Query: 232      accacatccactacgtgaacggcggacgggaggtgcagctgtccctcgacaagaccaccg 291
                ||||||||||||||||| ||||||| || ||||||||||| | |||||||||| ||||||
Sbjct: 19009999 accacatccactacgtggacggcgggcgcgaggtgcagctctacctcgacaagtccaccg 19010058

                                              
Query: 292      gcactggcttccagacccggggctcctacc 321
                |||| |||||||||||||||||||||||||
Sbjct: 19010059 gcaccggcttccagacccggggctcctacc 19010088
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>dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D14, full
           insert sequence
          Length = 977

 Score =  202 bits (102), Expect = 5e-49
 Identities = 138/150 (92%)
 Strand = Plus / Plus

                                                                       
Query: 172 cgccccggaagccggtggacgtgccattcgagaagaactacgtcccgacatgggcggagg 231
           |||| |||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||
Sbjct: 101 cgccgcggaagccggtggacgtggcgttcgagaagaactacgtgccgacgtgggcggagg 160

                                                                       
Query: 232 accacatccactacgtgaacggcggacgggaggtgcagctgtccctcgacaagaccaccg 291
           ||||||||||||||||| ||||||| || ||||||||||| | |||||||||| ||||||
Sbjct: 161 accacatccactacgtggacggcgggcgcgaggtgcagctctacctcgacaagtccaccg 220

                                         
Query: 292 gcactggcttccagacccggggctcctacc 321
           |||| |||||||||||||||||||||||||
Sbjct: 221 gcaccggcttccagacccggggctcctacc 250
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>dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A02, full
           insert sequence
          Length = 1053

 Score =  202 bits (102), Expect = 5e-49
 Identities = 138/150 (92%)
 Strand = Plus / Plus

                                                                       
Query: 172 cgccccggaagccggtggacgtgccattcgagaagaactacgtcccgacatgggcggagg 231
           |||| |||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||
Sbjct: 98  cgccgcggaagccggtggacgtggcgttcgagaagaactacgtgccgacgtgggcggagg 157

                                                                       
Query: 232 accacatccactacgtgaacggcggacgggaggtgcagctgtccctcgacaagaccaccg 291
           ||||||||||||||||| ||||||| || ||||||||||| | |||||||||| ||||||
Sbjct: 158 accacatccactacgtggacggcgggcgcgaggtgcagctctacctcgacaagtccaccg 217

                                         
Query: 292 gcactggcttccagacccggggctcctacc 321
           |||| |||||||||||||||||||||||||
Sbjct: 218 gcaccggcttccagacccggggctcctacc 247
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  202 bits (102), Expect = 5e-49
 Identities = 138/150 (92%)
 Strand = Plus / Plus

                                                                            
Query: 172      cgccccggaagccggtggacgtgccattcgagaagaactacgtcccgacatgggcggagg 231
                |||| |||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||
Sbjct: 19168588 cgccgcggaagccggtggacgtggcgttcgagaagaactacgtgccgacgtgggcggagg 19168647

                                                                            
Query: 232      accacatccactacgtgaacggcggacgggaggtgcagctgtccctcgacaagaccaccg 291
                ||||||||||||||||| ||||||| || ||||||||||| | |||||||||| ||||||
Sbjct: 19168648 accacatccactacgtggacggcgggcgcgaggtgcagctctacctcgacaagtccaccg 19168707

                                              
Query: 292      gcactggcttccagacccggggctcctacc 321
                |||| |||||||||||||||||||||||||
Sbjct: 19168708 gcaccggcttccagacccggggctcctacc 19168737
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>gb|AY104207.1| Zea mays PCO111099 mRNA sequence
          Length = 1202

 Score =  172 bits (87), Expect = 4e-40
 Identities = 141/159 (88%)
 Strand = Plus / Plus

                                                                       
Query: 163 cggcagcgccgccccggaagccggtggacgtgccattcgagaagaactacgtcccgacat 222
           |||| ||| |||| |||||||| ||||||||||| ||| ||||||||||||| ||||| |
Sbjct: 112 cggcggcggcgcctcggaagcccgtggacgtgccgttccagaagaactacgtgccgacgt 171

                                                                       
Query: 223 gggcggaggaccacatccactacgtgaacggcggacgggaggtgcagctgtccctcgaca 282
           ||||| ||||||||||||||||| |  ||||||| |||||||||||||||| ||| ||||
Sbjct: 172 gggcgcaggaccacatccactacatcgacggcgggcgggaggtgcagctgtacctggaca 231

                                                  
Query: 283 agaccaccggcactggcttccagacccggggctcctacc 321
           || |||||||||| ||||||||||| |||||||||||||
Sbjct: 232 agtccaccggcacgggcttccagacgcggggctcctacc 270
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>gb|AC159810.2| Mus musculus BAC clone RP24-94A19 from chromosome 9, complete sequence
          Length = 168537

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 76     gaggaggaggaagagaggccggc 98
              |||||||||||||||||||||||
Sbjct: 122700 gaggaggaggaagagaggccggc 122678
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>emb|CR711857.2|CNS0GC7X Tetraodon nigroviridis full-length cDNA
          Length = 892

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 76  gaggaggaggaagagaggccgg 97
           ||||||||||||||||||||||
Sbjct: 576 gaggaggaggaagagaggccgg 597
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>emb|CR718189.2|CNS0GH3N Tetraodon nigroviridis full-length cDNA
          Length = 891

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 76  gaggaggaggaagagaggccgg 97
           ||||||||||||||||||||||
Sbjct: 576 gaggaggaggaagagaggccgg 597
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 72       aacagaggaggaggaagagagg 93
                ||||||||||||||||||||||
Sbjct: 23162659 aacagaggaggaggaagagagg 23162680
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 72       aacagaggaggaggaagagagg 93
                ||||||||||||||||||||||
Sbjct: 23090850 aacagaggaggaggaagagagg 23090871
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>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135323

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 72    aacagaggaggaggaagagagg 93
             ||||||||||||||||||||||
Sbjct: 15738 aacagaggaggaggaagagagg 15717
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>gb|AC108758.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0066E19, complete sequence
          Length = 145575

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    gtaacagaggaggaggaagag 90
             |||||||||||||||||||||
Sbjct: 71484 gtaacagaggaggaggaagag 71464
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>gb|AC132391.3| Mus musculus BAC clone RP23-454N21 from chromosome 12, complete
             sequence
          Length = 178291

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    acagaggaggaggaagagagg 93
             |||||||||||||||||||||
Sbjct: 99335 acagaggaggaggaagagagg 99355
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>gb|AC151992.3| Mus musculus BAC clone RP23-212H13 from chromosome 8, complete sequence
          Length = 182428

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 73     acagaggaggaggaagagagg 93
              |||||||||||||||||||||
Sbjct: 162052 acagaggaggaggaagagagg 162032
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>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 124   tcctcgccgtggtggccacggtgct 148
             ||||||||||||||||| |||||||
Sbjct: 75420 tcctcgccgtggtggccgcggtgct 75396
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>gb|AE005709.1| Caulobacter crescentus CB15 section 35 of 359 of the complete genome
          Length = 10538

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 124  tcctcgccgtggtggccacggtgct 148
            |||| ||||||||||||||||||||
Sbjct: 9397 tcctggccgtggtggccacggtgct 9421
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 70       gtaacagaggaggaggaagag 90
                |||||||||||||||||||||
Sbjct: 18673708 gtaacagaggaggaggaagag 18673688
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>gb|AC157949.1| Mus musculus BAC clone RP23-148A16 from chromosome 9, complete sequence
          Length = 204674

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 76    gaggaggaggaagagaggccg 96
             |||||||||||||||||||||
Sbjct: 12874 gaggaggaggaagagaggccg 12894
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 116     gggggccctcctcgccgtggtggcc 140
               ||||||||||||| |||||||||||
Sbjct: 1460587 gggggccctcctcaccgtggtggcc 1460611
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>emb|Z60540.1|HS27G11R H.sapiens CpG island DNA genomic Mse1 fragment, clone 27g11,
          reverse read cpg27g11.rt1a
          Length = 321

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 75 agaggaggaggaagagaggcc 95
          |||||||||||||||||||||
Sbjct: 55 agaggaggaggaagagaggcc 75
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>dbj|AP001858.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-959F10, complete
             sequence
          Length = 210723

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 75    agaggaggaggaagagaggcc 95
             |||||||||||||||||||||
Sbjct: 46295 agaggaggaggaagagaggcc 46315
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 113     cgcgggggccctcctcgccgtggtg 137
               |||||||||||||||||||| ||||
Sbjct: 1592243 cgcgggggccctcctcgccgcggtg 1592219
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>gb|AC134606.4| Mus musculus BAC clone RP23-52K6 from 9, complete sequence
          Length = 171495

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 76     gaggaggaggaagagaggccg 96
              |||||||||||||||||||||
Sbjct: 118167 gaggaggaggaagagaggccg 118187
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>ref|NM_188932.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2403

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 112 ccgcgggggccctcctcgcc 131
           ||||||||||||||||||||
Sbjct: 425 ccgcgggggccctcctcgcc 444
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>ref|XM_958677.1| Neurospora crassa OR74A hypothetical protein (NCU07476.1) partial
           mRNA
          Length = 2763

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  agaggaggaggaagagaggc 94
           ||||||||||||||||||||
Sbjct: 135 agaggaggaggaagagaggc 116
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>ref|XM_327761.1| Neurospora crassa OR74A hypothetical protein (NCU07476.1) partial
           mRNA
          Length = 2763

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  agaggaggaggaagagaggc 94
           ||||||||||||||||||||
Sbjct: 135 agaggaggaggaagagaggc 116
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>gb|AC146238.2| Pan troglodytes BAC clone CH251-170A15 from Y, complete sequence
          Length = 169552

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    agtactagccaagccattgt 61
             ||||||||||||||||||||
Sbjct: 46674 agtactagccaagccattgt 46693
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>gb|AC120408.7| Mus musculus chromosome 5, clone RP24-433N14, complete sequence
          Length = 178077

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     agaggaggaggaagagaggc 94
              ||||||||||||||||||||
Sbjct: 129665 agaggaggaggaagagaggc 129646
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 72       aacagaggaggaggaagaga 91
                ||||||||||||||||||||
Sbjct: 33448951 aacagaggaggaggaagaga 33448932
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>gb|AC154710.2| Mus musculus BAC clone RP24-357L12 from chromosome 14, complete
             sequence
          Length = 163421

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    gaggaggaggaagagaggcc 95
             ||||||||||||||||||||
Sbjct: 22965 gaggaggaggaagagaggcc 22946
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>gb|AC005247.2| Homo sapiens PAC clone RP4-740L10 from 7, complete sequence
          Length = 124096

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     ggaggaggaagagaggccgg 97
              ||||||||||||||||||||
Sbjct: 110181 ggaggaggaagagaggccgg 110162
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>gb|AC159294.2| Mus musculus BAC clone RP23-287I15 from chromosome 12, complete sequence
          Length = 226841

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     cagaggaggaggaagagagg 93
              ||||||||||||||||||||
Sbjct: 105189 cagaggaggaggaagagagg 105170
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>gb|AC069067.17| Homo sapiens 3 BAC RP11-454C18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172213

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    cagaggaggaggaagagagg 93
             ||||||||||||||||||||
Sbjct: 29897 cagaggaggaggaagagagg 29878
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>ref|NM_001030710.1| Gallus gallus similar to MGC68830 protein (LOC417509), mRNA
          Length = 3031

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 75   agaggaggaggaagagaggc 94
            ||||||||||||||||||||
Sbjct: 2725 agaggaggaggaagagaggc 2706
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>ref|NM_001015912.1| Xenopus tropicalis CDC37 cell division cycle 37 homolog (S.
           cerevisiae) (cdc37), mRNA
          Length = 1875

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  agaagtaacagaggaggaggaaga 89
           ||||||||||||||||||| ||||
Sbjct: 463 agaagtaacagaggaggagaaaga 486
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>emb|BX323026.5| Mouse DNA sequence from clone RP24-95F14 on chromosome 11 Contains
            the Ppm1d gene for magnesium-dependent protein
            phosphatase 1D delta isoform, the 5' end of the Bcas3
            gene for breast carcinoma amplified sequence 3 and a CpG
            island, complete sequence
          Length = 130030

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  gggaggtgcagctgtccctc 278
            ||||||||||||||||||||
Sbjct: 3014 gggaggtgcagctgtccctc 3033
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>emb|AL645973.8| Mouse DNA sequence from clone RP23-287B6 on chromosome 11 Contains a
             pseudogene similar to part of ribosomal protein S2 (Rps2),
             a mitchondrial ribosomal protein S7 (Rpms7, MRP-S7)
             (Mrps7) pseudogene, a pseudogene similar to part of a
             novel protein, a novel gene and a eukaryotic translation
             initiation factor pseudogene, complete sequence
          Length = 196006

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    cagaggaggaggaagagagg 93
             ||||||||||||||||||||
Sbjct: 76776 cagaggaggaggaagagagg 76795
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>emb|AJ719622.1| Gallus gallus mRNA for hypothetical protein, clone 4k12
          Length = 3031

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 75   agaggaggaggaagagaggc 94
            ||||||||||||||||||||
Sbjct: 2725 agaggaggaggaagagaggc 2706
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>dbj|BS000585.1| Pan troglodytes chromosome Y clone:PTB-582H02, complete sequence
          Length = 140513

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    agtactagccaagccattgt 61
             ||||||||||||||||||||
Sbjct: 84755 agtactagccaagccattgt 84774
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 42       agtactagccaagccattgt 61
                ||||||||||||||||||||
Sbjct: 20127228 agtactagccaagccattgt 20127209
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>gb|AC105401.5| Homo sapiens BAC clone RP11-765K14 from 4, complete sequence
          Length = 30064

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    acagaggaggaggaagagag 92
             ||||||||||||||||||||
Sbjct: 11735 acagaggaggaggaagagag 11754
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>gb|AC087258.14| Homo sapiens 12p BAC RP11-686N4 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 127018

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    taacagaggaggaggaagag 90
             ||||||||||||||||||||
Sbjct: 10039 taacagaggaggaggaagag 10020
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>emb|CR522991.1| Gallus gallus finished cDNA, clone ChEST799i23
          Length = 993

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  agaggaggaggaagagaggc 94
           ||||||||||||||||||||
Sbjct: 962 agaggaggaggaagagaggc 943
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>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
             sequence
          Length = 154555

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    aacagaggaggaggaagaga 91
             ||||||||||||||||||||
Sbjct: 49160 aacagaggaggaggaagaga 49179
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>gb|AC123660.8| Mus musculus chromosome 3, clone RP23-196E24, complete sequence
          Length = 211632

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    taacagaggaggaggaagag 90
             ||||||||||||||||||||
Sbjct: 52307 taacagaggaggaggaagag 52326
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>gb|AC017016.5|AC017016 Homo sapiens BAC clone RP11-152H13 from 3, complete sequence
          Length = 180681

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     cagaggaggaggaagagagg 93
              ||||||||||||||||||||
Sbjct: 140318 cagaggaggaggaagagagg 140337
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>gb|AC006435.7|AC006435 Homo sapiens chromosome 17, clone RP5-59D14, complete sequence
          Length = 139267

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     cagaggaggaggaagagagg 93
              ||||||||||||||||||||
Sbjct: 135775 cagaggaggaggaagagagg 135756
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 112      ccgcgggggccctcctcgcc 131
                ||||||||||||||||||||
Sbjct: 20214168 ccgcgggggccctcctcgcc 20214149
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 72       aacagaggaggaggaagaga 91
                ||||||||||||||||||||
Sbjct: 33539461 aacagaggaggaggaagaga 33539442
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>gb|AC010972.3|AC010972 Homo sapiens clone RP11-133D3, complete sequence
          Length = 114637

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    agtactagccaagccattgt 61
             ||||||||||||||||||||
Sbjct: 84150 agtactagccaagccattgt 84169
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>gb|AC147710.3| Pan troglodytes BAC clone CH251-473C15 from chromosome y, complete
              sequence
          Length = 200403

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     agtactagccaagccattgt 61
              ||||||||||||||||||||
Sbjct: 181072 agtactagccaagccattgt 181091
to top
>gb|AC112666.9| Mus musculus chromosome 3, clone RP24-119D5, complete sequence
          Length = 193302

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     taacagaggaggaggaagag 90
              ||||||||||||||||||||
Sbjct: 114435 taacagaggaggaggaagag 114454
to top
>gb|AC015799.23| Homo sapiens chromosome 17, clone RP11-135N5, complete sequence
          Length = 180157

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     cagaggaggaggaagagagg 93
              ||||||||||||||||||||
Sbjct: 179480 cagaggaggaggaagagagg 179499
to top
>dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0077M12
          Length = 145337

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   ccgcgggggccctcctcgcc 131
             ||||||||||||||||||||
Sbjct: 79954 ccgcgggggccctcctcgcc 79935
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>dbj|AK068398.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151L03,
          full insert sequence
          Length = 1100

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 72 aacagaggaggaggaagaga 91
          ||||||||||||||||||||
Sbjct: 77 aacagaggaggaggaagaga 58
to top
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     acagaggaggaggaagagag 92
              ||||||||||||||||||||
Sbjct: 613900 acagaggaggaggaagagag 613881
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>emb|CR926424.1| Xenopus tropicalis finished cDNA, clone TGas127m02
          Length = 1875

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  agaagtaacagaggaggaggaaga 89
           ||||||||||||||||||| ||||
Sbjct: 463 agaagtaacagaggaggagaaaga 486
to top
>gb|AC159104.2| Mus musculus BAC clone RP23-246E2 from chromosome 13, complete sequence
          Length = 203694

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    cagaggaggaggaagagagg 93
             ||||||||||||||||||||
Sbjct: 15108 cagaggaggaggaagagagg 15089
to top
>gb|AC154246.3| Mus musculus BAC clone RP24-329G5 from chromosome 13, complete sequence
          Length = 177214

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     cagaggaggaggaagagagg 93
              ||||||||||||||||||||
Sbjct: 110726 cagaggaggaggaagagagg 110745
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>gb|AC111084.12| Mus musculus chromosome 7, clone RP23-143J24, complete sequence
          Length = 205564

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     gaggaggaggaagagaggcc 95
              ||||||||||||||||||||
Sbjct: 136788 gaggaggaggaagagaggcc 136769
to top
>gb|AC105298.21| Mus musculus strain C57BL/6J chromosome 5 clone rp23-224j9, complete
              sequence
          Length = 258789

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     agaggaggaggaagagaggc 94
              ||||||||||||||||||||
Sbjct: 180560 agaggaggaggaagagaggc 180579
to top
>gb|AC141560.4| Mus musculus BAC clone RP23-425A5 from 12, complete sequence
          Length = 196665

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    agaggaggaggaagagaggccggc 98
             |||||||||||| |||||||||||
Sbjct: 98156 agaggaggaggaggagaggccggc 98133
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>emb|CT010516.6| Mouse DNA sequence from clone RP23-276H24 on chromosome 14, complete
              sequence
          Length = 194815

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     gaggaggaggaagagaggcc 95
              ||||||||||||||||||||
Sbjct: 187557 gaggaggaggaagagaggcc 187538
to top
>gb|AC134670.3| Homo sapiens chromosome 17, clone CTD-2283G11, complete sequence
          Length = 36100

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    cagaggaggaggaagagagg 93
             ||||||||||||||||||||
Sbjct: 21478 cagaggaggaggaagagagg 21497


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,955,489
Number of Sequences: 3902068
Number of extensions: 2955489
Number of successful extensions: 119822
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119191
Number of HSP's gapped (non-prelim): 627
length of query: 321
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 299
effective length of database: 17,147,199,772
effective search space: 5127012731828
effective search space used: 5127012731828
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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