| Clone Name | bast64d10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_655839.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3327.2), mRNA Length = 1062 Score = 42.1 bits (21), Expect = 0.37 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 cttgtgctgccgtggcgcgcc 83 ||||||||||||||||||||| Sbjct: 697 cttgtgctgccgtggcgcgcc 717
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.37 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 ctcgccgctgccttccctctt 65 ||||||||||||||||||||| Sbjct: 35802788 ctcgccgctgccttccctctt 35802808 Score = 42.1 bits (21), Expect = 0.37 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ctcgccgctgccttccctctt 65 ||||||||||||||||||||| Sbjct: 30906263 ctcgccgctgccttccctctt 30906243 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 cgccgctgccttccctcttg 66 |||||||||||||||||||| Sbjct: 22578434 cgccgctgccttccctcttg 22578415
>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0638D12 Length = 161277 Score = 42.1 bits (21), Expect = 0.37 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ctcgccgctgccttccctctt 65 ||||||||||||||||||||| Sbjct: 106630 ctcgccgctgccttccctctt 106610
>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506B12 Length = 170759 Score = 42.1 bits (21), Expect = 0.37 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 ctcgccgctgccttccctctt 65 ||||||||||||||||||||| Sbjct: 67246 ctcgccgctgccttccctctt 67266
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ccatctcttcctcctgtcca 26 |||||||||||||||||||| Sbjct: 5068912 ccatctcttcctcctgtcca 5068931
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ccatctcttcctcctgtcca 26 |||||||||||||||||||| Sbjct: 5063012 ccatctcttcctcctgtcca 5063031
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ccatctcttcctcctgtcca 26 |||||||||||||||||||| Sbjct: 5064221 ccatctcttcctcctgtcca 5064240
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ccatctcttcctcctgtcca 26 |||||||||||||||||||| Sbjct: 5133156 ccatctcttcctcctgtcca 5133175
>gb|AC005865.1| Homo sapiens 12 PAC RPCI5-1063M23 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 112911 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 ctgccttccctcttgtgctg 71 |||||||||||||||||||| Sbjct: 80264 ctgccttccctcttgtgctg 80283
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 cacctcgatcgtctcgccgctgcc 56 ||||||||||||| |||||||||| Sbjct: 4036198 cacctcgatcgtcccgccgctgcc 4036175
>gb|AC017109.5| Homo sapiens chromosome 4 clone RP11-568O24, complete sequence Length = 195169 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ttgctccatctcttcctcct 21 |||||||||||||||||||| Sbjct: 4871 ttgctccatctcttcctcct 4890
>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1097D05 Length = 144879 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 cgccgctgccttccctcttg 66 |||||||||||||||||||| Sbjct: 94171 cgccgctgccttccctcttg 94152
>dbj|BS000016.1| Pan troglodytes chromosome 22 clone:PTB-066F21, map 22, complete sequences Length = 148564 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tccatctcttcctcctgtcc 25 |||||||||||||||||||| Sbjct: 26868 tccatctcttcctcctgtcc 26849
>gb|AF222685.1|AF222685 Homo sapiens chromosome 21 PAC 103K19 map 21q11.2, complete sequence Length = 85040 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tccatctcttcctcctgtcc 25 |||||||||||||||||||| Sbjct: 76851 tccatctcttcctcctgtcc 76832
>emb|AL163208.2|HS21C008 Homo sapiens chromosome 21 segment HS21C008 Length = 340000 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tccatctcttcctcctgtcc 25 |||||||||||||||||||| Sbjct: 235050 tccatctcttcctcctgtcc 235031
>gb|AF130248.1|AF130248 Homo sapiens clone 10J13 chromosome 21 map 21q11.2, complete sequence Length = 137074 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tccatctcttcctcctgtcc 25 |||||||||||||||||||| Sbjct: 21268 tccatctcttcctcctgtcc 21249
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ccatctcttcctcctgtcca 26 |||||||||||||||||||| Sbjct: 5241975 ccatctcttcctcctgtcca 5241994
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ccatctcttcctcctgtcca 26 |||||||||||||||||||| Sbjct: 5062886 ccatctcttcctcctgtcca 5062905
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ccatctcttcctcctgtcca 26 |||||||||||||||||||| Sbjct: 5042297 ccatctcttcctcctgtcca 5042316
>gb|AC102775.6| Mus musculus chromosome 8, clone RP23-115C10, complete sequence Length = 185846 Score = 38.2 bits (19), Expect = 5.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 ttgctccatctcttcctcctgtc 24 ||||||||||| ||||||||||| Sbjct: 100146 ttgctccatcttttcctcctgtc 100124
>gb|AC139328.4| Mus musculus BAC clone RP24-299C21 from chromosome Y, complete sequence Length = 156740 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 tctcttcctcctgtccaac 28 ||||||||||||||||||| Sbjct: 81384 tctcttcctcctgtccaac 81402
>gb|AC116473.13| Mus musculus chromosome 8, clone RP23-385E22, complete sequence Length = 186155 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 ttgctccatctcttcctcc 20 ||||||||||||||||||| Sbjct: 161567 ttgctccatctcttcctcc 161549
>gb|AF438337.1|AF438331S7 Mus musculus leukemia-associated protein MLLT1 (Mllt1) gene, exon 7 Length = 731 Score = 38.2 bits (19), Expect = 5.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 57 ttccctcttgtgctgccgtggcg 79 ||||||||||||||||| ||||| Sbjct: 292 ttccctcttgtgctgccctggcg 314
>ref|XM_754380.1| Ustilago maydis 521 hypothetical protein (UM03326.1) partial mRNA Length = 3876 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ctcgatcgtctcgccgctg 54 ||||||||||||||||||| Sbjct: 2529 ctcgatcgtctcgccgctg 2547
>gb|AC090821.13| Homo sapiens chromosome 8, clone CTD-2309H9, complete sequence Length = 166843 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 ctccatctcttcctcctgt 23 ||||||||||||||||||| Sbjct: 24006 ctccatctcttcctcctgt 23988
>gb|AC113123.8| Mus musculus chromosome 8, clone RP23-349O15, complete sequence Length = 213829 Score = 38.2 bits (19), Expect = 5.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 2 ttgctccatctcttcctcctgtc 24 ||||||||||| ||||||||||| Sbjct: 184958 ttgctccatcttttcctcctgtc 184980
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 ccgtggcgcgccagatggt 90 ||||||||||||||||||| Sbjct: 411025 ccgtggcgcgccagatggt 411043
>gb|AC123517.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBb0074K09, complete sequence Length = 135363 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 ctcgccgctgccttccctc 63 ||||||||||||||||||| Sbjct: 70399 ctcgccgctgccttccctc 70417
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 cgtggcgcgccagatggtc 91 ||||||||||||||||||| Sbjct: 167510 cgtggcgcgccagatggtc 167528
>gb|DQ447895.1| Cyathus striatus isolate AFTOL-ID 1333 RNA polymerase II largest subunit (rpb1) gene, partial cds Length = 1445 Score = 38.2 bits (19), Expect = 5.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 14 ttcctcctgtccaaccaagcacc 36 |||||| |||||||||||||||| Sbjct: 403 ttcctcgtgtccaaccaagcacc 381
>gb|AC118584.18| Papio anubis clone rp41-78d16, complete sequence Length = 189610 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 tgctccatctcttcctcct 21 ||||||||||||||||||| Sbjct: 158371 tgctccatctcttcctcct 158353
>gb|AC024599.9| Homo sapiens chromosome 10 clone RP11-159H3, complete sequence Length = 173391 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 attgctccatctcttcctc 19 ||||||||||||||||||| Sbjct: 135049 attgctccatctcttcctc 135067
>gb|AC073683.3| Mus musculus chromosome 17 clone RP23-124G7, complete sequence Length = 213137 Score = 38.2 bits (19), Expect = 5.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 57 ttccctcttgtgctgccgtggcg 79 ||||||||||||||||| ||||| Sbjct: 110332 ttccctcttgtgctgccctggcg 110354
>gb|AC158573.5| Mus musculus chromosome 8, clone RP23-101F17, complete sequence Length = 204567 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 tgctccatctcttcctcct 21 ||||||||||||||||||| Sbjct: 20347 tgctccatctcttcctcct 20365 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 tgctccatctcttcctcct 21 ||||||||||||||||||| Sbjct: 20287 tgctccatctcttcctcct 20305
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 ctcgccgctgccttccctc 63 ||||||||||||||||||| Sbjct: 6014316 ctcgccgctgccttccctc 6014334
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 ctcgccgctgccttccctc 63 ||||||||||||||||||| Sbjct: 24349131 ctcgccgctgccttccctc 24349149
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 cgccgctgccttccctctt 65 ||||||||||||||||||| Sbjct: 9857435 cgccgctgccttccctctt 9857417
>dbj|AP005007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0521F09 Length = 164823 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 cgccgctgccttccctctt 65 ||||||||||||||||||| Sbjct: 38397 cgccgctgccttccctctt 38379
>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1579_C03 Length = 122851 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 ctcgccgctgccttccctc 63 ||||||||||||||||||| Sbjct: 82324 ctcgccgctgccttccctc 82342
>gb|AC115020.11| Mus musculus chromosome 1, clone RP24-231D14, complete sequence Length = 188569 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 tgctccatctcttcctcct 21 ||||||||||||||||||| Sbjct: 88234 tgctccatctcttcctcct 88252
>gb|AC112948.12| Mus musculus chromosome 8, clone RP23-299I18, complete sequence Length = 197546 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 tgctccatctcttcctcct 21 ||||||||||||||||||| Sbjct: 82345 tgctccatctcttcctcct 82327 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 tgctccatctcttcctcct 21 ||||||||||||||||||| Sbjct: 82285 tgctccatctcttcctcct 82267
>gb|DQ068021.1| Cyathus striatus RNA polymerase II largest subunit (RPB1) gene, partial sequence Length = 1302 Score = 38.2 bits (19), Expect = 5.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 14 ttcctcctgtccaaccaagcacc 36 |||||| |||||||||||||||| Sbjct: 320 ttcctcgtgtccaaccaagcacc 298
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 ctcgccgctgccttccctc 63 ||||||||||||||||||| Sbjct: 6080793 ctcgccgctgccttccctc 6080811 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,005,088 Number of Sequences: 3902068 Number of extensions: 1005088 Number of successful extensions: 78379 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77818 Number of HSP's gapped (non-prelim): 561 length of query: 124 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 103 effective length of database: 17,151,101,840 effective search space: 1766563489520 effective search space used: 1766563489520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)