Clone Information

BLAST Search Result

Clone Name	bast64c07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AIR12_ARATH (Q94BT2) Auxin-induced in root cultures protein 12 p...	92	8e-19
2	DCOA_KLEPN (P13187) Oxaloacetate decarboxylase alpha chain (EC 4...	34	0.16
3	RA51B_HUMAN (O15315) DNA repair protein RAD51 homolog 2 (R51H2) ...	32	0.59
4	PROB_SYNY3 (P73071) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glut...	32	1.0
5	LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alterna...	32	1.0
6	STK39_RAT (O88506) STE20/SPS1-related proline-alanine-rich prote...	31	1.3
7	STE20_YEAST (Q03497) Serine/threonine-protein kinase STE20 (EC 2...	31	1.3
8	CPO_DROME (Q01617) Protein couch potato	31	1.3
9	IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2	30	2.3
10	IF2_XANCP (Q8P7U7) Translation initiation factor IF-2	30	2.3
11	CHEB1_PSEAE (O87125) Chemotaxis response regulator protein-gluta...	30	2.3
12	MK07_MOUSE (Q9WVS8) Mitogen-activated protein kinase 7 (EC 2.7.1...	30	2.9
13	TEGU_EHV1B (P28955) Large tegument protein	30	2.9
14	NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleo...	30	2.9
15	ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi...	30	2.9
16	ODO2_RAT (Q01205) Dihydrolipoyllysine-residue succinyltransferas...	30	3.8
17	VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protei...	30	3.8
18	SDC1_RAT (P26260) Syndecan-1 precursor (SYND1)	30	3.8
19	STK39_MOUSE (Q9Z1W9) STE20/SPS1-related proline-alanine-rich pro...	30	3.8
20	ODO2_HUMAN (P36957) Dihydrolipoyllysine-residue succinyltransfer...	30	3.8
21	CPN_DROME (Q02910) Calphotin	30	3.8
22	ODO2_PIG (Q9N0F1) Dihydrolipoyllysine-residue succinyltransferas...	30	3.8
23	WNK1_MOUSE (P83741) Serine/threonine-protein kinase WNK1 (EC 2.7...	30	3.8
24	SDC1_MOUSE (P18828) Syndecan-1 precursor (SYND1)	30	3.8
25	TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)	30	3.8
26	DNAA_BURPS (Q63YW5) Chromosomal replication initiator protein dnaA	30	3.8
27	VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antige...	29	5.0
28	VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antige...	29	5.0
29	ODO2_MOUSE (Q9D2G2) Dihydrolipoyllysine-residue succinyltransfer...	29	5.0
30	MYC2_MARMO (P20389) N-myc 2 proto-oncogene protein	29	5.0
31	GHR_PIG (P19756) Growth hormone receptor precursor (GH receptor)...	29	5.0
32	RCOR1_HUMAN (Q9UKL0) REST corepressor 1 (Protein CoREST)	29	5.0
33	COG5_HUMAN (Q9UP83) Conserved oligomeric Golgi complex component...	29	5.0
34	TAF4_HUMAN (O00268) Transcription initiation factor TFIID subuni...	29	5.0
35	ANPA_PSEAM (P04002) Ice-structuring protein A precursor (ISP A) ...	29	5.0
36	CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displace...	29	6.6
37	PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)	29	6.6
38	TRAC_RHISN (P55419) Probable conjugal transfer protein traC	29	6.6
39	ABCB9_RAT (Q9QYJ4) ATP-binding cassette sub-family B member 9 pr...	28	8.6
40	ABCB9_MOUSE (Q9JJ59) ATP-binding cassette sub-family B member 9 ...	28	8.6
41	AP180_HUMAN (O60641) Clathrin coat assembly protein AP180 (Clath...	28	8.6
42	MUC1_YEAST (P08640) Mucin-like protein 1 precursor	28	8.6
43	K0174_HUMAN (P53990) Protein KIAA0174 (Putative MAPK-activating ...	28	8.6
44	AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathri...	28	8.6
45	AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clath...	28	8.6

>AIR12_ARATH (Q94BT2) Auxin-induced in root cultures protein 12 precursor|
          Length = 252

 Score = 91.7 bits (226), Expect = 8e-19
 Identities = 44/74 (59%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
 Frame = +1

Query: 223 YAKCEDLPQLGAALHWTYDESKSSLSLAFVAAPAGANG-WVAWALNPTGEGMAGAQALVA 399
           +  CEDLP L + LH+TY+ S SSLS+AFVA P+ ANG WVAWA+NPTG  MAG+QA +A
Sbjct: 40  FDSCEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLA 99

Query: 400 LKGSGAAALTVRTY 441
            +  G AA  V+TY
Sbjct: 100 YRSGGGAAPVVKTY 113

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>DCOA_KLEPN (P13187) Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)|
          Length = 595

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 20/41 (48%), Positives = 22/41 (53%)
 Frame = -2

Query: 449 GDVYVLTVSAAAPEPLSATSACAPAMPSPVGLSAQATHPLA 327
           GDV  LT +A AP P  A  A APA  +P G     T PLA
Sbjct: 495 GDVSQLTAAAPAPAPAPAP-ASAPAAAAPAGAGTPVTAPLA 534

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>RA51B_HUMAN (O15315) DNA repair protein RAD51 homolog 2 (R51H2) (RAD51-like|
           protein 1) (Rad51B)
          Length = 384

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -2

Query: 389 ACAPAMPSPVGLSAQATHPLAPAGAATNASERDDLDSS*VQC------SAAPSCGRS 237
           ACAP M +  G+ AQ +   +PA  +T  S  D+     V C      +  P CG++
Sbjct: 59  ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKT 115

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>PROB_SYNY3 (P73071) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 375

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 289 SSLSLAFVAAPAGANG---WVAWALNPTGEGMAGAQALVALKGSGAAALTV 432
           ++L   F A P   N    W+A+ L PTG+    A A+ ALK  G + L +
Sbjct: 254 ANLGTQFEAQPRSDNARKRWIAYGLVPTGKIFIDAGAVQALKARGKSLLAI 304

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>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher) (Protein oracle)
          Length = 723

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
 Frame = -2

Query: 425 SAAAPEPLSATSACAPAMPSPVGLS-----AQATHPLA--PAGAATNASERDDLDSS*VQ 267
           ++ A  PL   SA +PA  SP+  S     A ATH  A   AG A +  E     +S   
Sbjct: 306 TSQATSPLLPASAQSPAAASPIAASPTLATAAATHAAAASAAGPAASPVENPRPQASAYS 365

Query: 266 CSAAPSCGRSSHLAY 222
            +AA S   S+H +Y
Sbjct: 366 PAAAASPAPSAHTSY 380

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>STK39_RAT (O88506) STE20/SPS1-related proline-alanine-rich protein kinase (EC|
           2.7.11.1) (Ste-20-related kinase)
           (Serine/threonine-protein kinase 39) (Pancreatic
           serine/threonine-protein kinase) (PS/TK) (PSTK1)
          Length = 553

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 22/42 (52%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = -2

Query: 428 VSAAAPEPLSATSACAPAMPSPVGLSAQATHPL---APAGAA 312
           V+AAA  P +ATSA APA P+P   +A A  P    APA AA
Sbjct: 20  VTAAAAAPAAATSAPAPA-PAPAAPAAPAPAPAAAPAPAPAA 60

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>STE20_YEAST (Q03497) Serine/threonine-protein kinase STE20 (EC 2.7.11.1)|
          Length = 939

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = -2

Query: 425 SAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERDDLDSS 276
           S  AP+P S+ SA AP + SPV  SA    PL    A T  +      SS
Sbjct: 473 SRPAPKPPSSASASAPIIKSPVMNSAANVSPLKQTHAPTTPNRTSPNRSS 522

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>CPO_DROME (Q01617) Protein couch potato|
          Length = 738

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
 Frame = -2

Query: 458 ARAGDVYVLTVSAAAPEPLSATSACA-----------PAMPSPVGLSAQATHPLAPAGAA 312
           A AG       +AAAP+  +AT+A A           PA+ SP G +  A+HP  P  AA
Sbjct: 640 AAAGGGGGAATAAAAPQSAAATAAAAAAASHHHYLSSPALASPAGSTNNASHPGNPQIAA 699

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>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2|
          Length = 902

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = -2

Query: 422 AAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAA 312
           AAAP P SA +A AP+ PS       A  P  PAGA+
Sbjct: 190 AAAPAPSSAPAARAPSSPS------SAPRPARPAGAS 220

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>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2|
          Length = 916

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = -2

Query: 422 AAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAA 312
           AAAP P SA +A AP+ PS       A  P  PAGA+
Sbjct: 204 AAAPAPSSAPAARAPSSPS------SAPRPARPAGAS 234

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>CHEB1_PSEAE (O87125) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 368

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -2

Query: 413 PEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASER 294
           P P + +S+ APA  S VG SA+     +PA A+T+A+ +
Sbjct: 141 PLPSATSSSHAPASSSSVGASARVGAGASPAPASTSAAPK 180

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>MK07_MOUSE (Q9WVS8) Mitogen-activated protein kinase 7 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 5) (ERK-5) (BMK1
           kinase)
          Length = 806

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 422 AAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGA 315
           A AP P  A S+  P   +P G  +Q+T PL PAG+
Sbjct: 584 APAPAPAPAPSSAQPTS-TPTGPVSQSTGPLQPAGS 618

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>TEGU_EHV1B (P28955) Large tegument protein|
          Length = 3421

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 19/50 (38%), Positives = 22/50 (44%)
 Frame = -2

Query: 425  SAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERDDLDSS 276
            SAAAP    A SA APA       +A A  P   A A   A  +D   S+
Sbjct: 2815 SAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAAPAKDQTKSA 2864

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>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
           (214 kDa nucleoporin) (CAN protein)
          Length = 2090

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 449 GDVYVLTVSAAAPEPLSATSACAPAMPSPVGLSAQ-ATHPLAPAGAA 312
           G       S+ AP+ L A++A APA   P   +A  AT  L PAG A
Sbjct: 432 GSTPTTPTSSQAPQKLDASAAAAPASLPPSSPAAPIATFSLLPAGGA 478

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>ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi-2)|
           (Abl-binding protein 3) (AblBP3) (Arg-binding protein 1)
           (ArgBP1)
          Length = 513

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = -2

Query: 443 VYVLTVSAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASE 297
           V+     +A   PL ATSA APA   P  + + +T P A AG A N ++
Sbjct: 281 VFPAPAGSAGTPPLPATSASAPAPLVPATVPS-STAPNAAAGGAPNLAD 328

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>ODO2_RAT (Q01205) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (EC 2.3.1.61) (Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex) (E2) (E2K)
          Length = 454

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 310 VAAPAGANGWVAWALNPTGEGMAGAQALVALKGSGAAALTVRTYTSPARA 459
           V  P+ ANG +   L P G  + G   L  L+ +GAA    +   +PA A
Sbjct: 114 VQVPSPANGIIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPATA 163

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>VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protein UL26)|
           [Contains: Capsid protein VP24 (EC 3.4.21.97)
           (Assemblin) (Protease); Capsid protein VP22A; UL26.5
           protein; C-terminal peptide]
          Length = 635

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -2

Query: 416 APEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERDDLDSS*VQCSAAPSCGRS 237
           AP P  A +AC P  P P   S Q   PL    A   A+     ++S  +  A  +   +
Sbjct: 554 APTPPYAPAACPPGPPPPPCPSTQTRAPLPTEPAFPPAATGSQPEASNAEAGALVNASSA 613

Query: 236 SHL 228
           +H+
Sbjct: 614 AHV 616

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>SDC1_RAT (P26260) Syndecan-1 precursor (SYND1)|
          Length = 313

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 446 DVYVLTVSAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERD 291
           DV++LT +  APEP S  +        P G   +   P+A   A  + + RD
Sbjct: 67  DVWLLTATPTAPEPTSRDTEATLTSILPAGEKPEEGEPVAHVEAEPDFTARD 118

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>STK39_MOUSE (Q9Z1W9) STE20/SPS1-related proline-alanine-rich protein kinase (EC|
           2.7.11.1) (Ste-20-related kinase)
           (Serine/threonine-protein kinase 39)
          Length = 556

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -2

Query: 425 SAAAPEPLSATSACAPA-MPSPVGLSAQATHPL---APAGAA 312
           +AAA  P +ATSA APA  P+P   +A A  P    APA AA
Sbjct: 22  AAAATAPAAATSAPAPAPAPAPAASAAPAPAPAAAPAPAPAA 63

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>ODO2_HUMAN (P36957) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (EC 2.3.1.61) (Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex) (E2) (E2
          Length = 453

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 310 VAAPAGANGWVAWALNPTGEGMAGAQALVALKGSGAAALTVRTYTSPARA 459
           V  P+ ANG +   L P G  + G   L  L+ +GAA    +   +PA A
Sbjct: 113 VQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAA 162

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>CPN_DROME (Q02910) Calphotin|
          Length = 864

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 428 VSAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNAS 300
           V+A+AP P + T   +P + +P  + A  T P+A   AA  A+
Sbjct: 141 VAASAPTPAAVTPVVSPVIATPPVVPANTTVPVAAPVAAVPAA 183

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>ODO2_PIG (Q9N0F1) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (EC 2.3.1.61) (Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex) (E2) (E2K)
          Length = 455

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 310 VAAPAGANGWVAWALNPTGEGMAGAQALVALKGSGAAALTVRTYTSPARA 459
           V  P+ ANG +   L P G  + G   L  L+ +GAA    +   +PA A
Sbjct: 114 VQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAA 163

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>WNK1_MOUSE (P83741) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein|
            kinase with no lysine 1) (Protein kinase,
            lysine-deficient 1)
          Length = 2377

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 16/58 (27%)
 Frame = -2

Query: 434  LTVSAAAPEPL--SATSACAPAMPSPVG--------------LSAQATHPLAPAGAAT 309
            +T +A AP  L  S TS C P    P+G              +S   TH  AP G AT
Sbjct: 1686 ITTTAVAPSKLMTSTTSTCLPPTSLPLGAAGMPVMPVGTPGQVSTPGTHASAPVGTAT 1743

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>SDC1_MOUSE (P18828) Syndecan-1 precursor (SYND1)|
          Length = 311

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 446 DVYVLTVSAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERD 291
           DV++LT +  APEP S+ +  A     P G   +   P+    A    + RD
Sbjct: 66  DVWLLTATPTAPEPTSSNTETAFTSVLPAGEKPEEGEPVLHVEAEPGFTARD 117

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>TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)|
          Length = 367

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
 Frame = -2

Query: 425 SAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASE--------RDDLDSS*V 270
           S   P P S+ S+C+ +  S    SA +T   AP   AT A+          +DL S   
Sbjct: 260 SRTPPPPSSSASSCSSSASSCSSASAASTPSGAPTCCATAAAAALLYGPGGAEDLLSPGA 319

Query: 269 QCSAAPSCGRSSHLAY 222
            C++  S G ++  A+
Sbjct: 320 PCASCSSSGANNAFAF 335

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>DNAA_BURPS (Q63YW5) Chromosomal replication initiator protein dnaA|
          Length = 533

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
 Frame = -2

Query: 422 AAAPEPLSATSACAPAM----PSPVGLSAQATHPLAPA---------GAATNASERDDLD 282
           +A P P++   A APA+    P+P G++A     +A A          AA NA E  DLD
Sbjct: 102 SANPAPVAPGPASAPAVDAHAPAPAGMNAATAAAVAAAQAAQAAQANAAALNADEAADLD 161

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>VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antigen) (MA)|
          Length = 886

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
 Frame = -2

Query: 437 VLTVSAAAPEPLSATSACAPAMPSPV----GLSAQATHPLAPAGAAT----NASERDDLD 282
           V T    +P P   TS  +P  PSP     G  ++A    +P  A T    NA+      
Sbjct: 468 VSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAV 527

Query: 281 SS*VQCSAAPSCGRSS 234
           ++    + +P+ G++S
Sbjct: 528 TTPTPNATSPTLGKTS 543

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>VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antigen) (MA)|
          Length = 886

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
 Frame = -2

Query: 437 VLTVSAAAPEPLSATSACAPAMPSPV----GLSAQATHPLAPAGAAT----NASERDDLD 282
           V T    +P P   TS  +P  PSP     G  ++A    +P  A T    NA+      
Sbjct: 468 VSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAV 527

Query: 281 SS*VQCSAAPSCGRSS 234
           ++    + +P+ G++S
Sbjct: 528 TTPTPNATSPTLGKTS 543

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>ODO2_MOUSE (Q9D2G2) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (EC 2.3.1.61) (Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex) (E2) (E2
          Length = 454

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 310 VAAPAGANGWVAWALNPTGEGMAGAQALVALKGSGAAALTVRTYTSPARA 459
           V  P+ ANG +   L P G  + G   L  L+ +GAA    +   +PA A
Sbjct: 114 VQVPSPANGIIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAETPAPA 163

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>MYC2_MARMO (P20389) N-myc 2 proto-oncogene protein|
          Length = 454

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = -2

Query: 443 VYVLTVSAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNA 303
           V++L VS   P P+    A APA  S VG  A      APA AA  A
Sbjct: 188 VFLLPVSKRNPVPVRVAPARAPARASAVG--AAVARAAAPATAAVAA 232

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>GHR_PIG (P19756) Growth hormone receptor precursor (GH receptor)|
           (Somatotropin receptor) [Contains: Growth
           hormone-binding protein (GH-binding protein) (GHBP)
           (Serum-binding protein)]
          Length = 638

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 446 DVYVLTVSAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNAS 300
           D+Y+ T S       SAT+ CAP+   PV          +P G   NA+
Sbjct: 564 DIYITTESLTTTAGRSATAECAPSSEMPVPDYTSIHIVQSPQGLVLNAT 612

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>RCOR1_HUMAN (Q9UKL0) REST corepressor 1 (Protein CoREST)|
          Length = 482

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = -2

Query: 425 SAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERDDLDSS*VQCSAAPSC 246
           +AA+    +A++A + A  SP   +A      + + AA +A+             AAP+ 
Sbjct: 18  AAASASAAAASAAASAACASPAATAASGAAASSASAAAASAA-------------AAPNN 64

Query: 245 GRSSHLAYVFPAGNFS 198
           G++  LA   P GN S
Sbjct: 65  GQNKSLAAAAPNGNSS 80

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>COG5_HUMAN (Q9UP83) Conserved oligomeric Golgi complex component 5 (13S Golgi|
           transport complex 90 kDa subunit) (GTC-90) (Golgi
           transport complex 1)
          Length = 839

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +1

Query: 313 AAPAGANGWVAWALNPTGEGMAGAQALVAL-----KGSGAAALTVR 435
           A+P G +   A  +NP    M G    VA+     +GSGAAA TVR
Sbjct: 12  ASPPGRSRSAADDINPAPANMEGGGGSVAVAGLGARGSGAAAATVR 57

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>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 419 AAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAA 312
           AAP P +  +A  P  P+P  L+    HP  P  AA
Sbjct: 259 AAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAA 294

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>ANPA_PSEAM (P04002) Ice-structuring protein A precursor (ISP A) (Antifreeze|
           protein A) (HPLC6)
          Length = 82

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 24/66 (36%), Positives = 28/66 (42%)
 Frame = +1

Query: 262 LHWTYDESKSSLSLAFVAAPAGANGWVAWALNPTGEGMAGAQALVALKGSGAAALTVRTY 441
           L WT   +++S   A  AAPA A    A A   T    A A AL A     AA LT    
Sbjct: 14  LFWTMRITEASPDPAAKAAPAAAAAPAA-AAPDTASDAAAAAALTAANAKAAAELTAANA 72

Query: 442 TSPARA 459
            + A A
Sbjct: 73  AAAAAA 78

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>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)|
            (CDP)
          Length = 1505

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -2

Query: 413  PEPLSATSACAPAMPSPVGLSAQAT---HPLAPAGA 315
            P P SAT+  APA P     SA A     P AP+ A
Sbjct: 1403 PSPASATATAAPAAPEDAATSAAAAPGEGPAAPSSA 1438

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>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)|
          Length = 939

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -2

Query: 422 AAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERDDLDSS*VQCSAAPSCG 243
           AAA    +A ++ AP+ PS   L ++      P G A +A  R D+  +  +  AA   G
Sbjct: 49  AAAAAAAAAAASAAPSAPSDRLLFSRRGQGADPGGKAQDAQPRPDVARADPRLEAASGAG 108

Query: 242 RSS 234
             S
Sbjct: 109 ADS 111

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>TRAC_RHISN (P55419) Probable conjugal transfer protein traC|
          Length = 102

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/43 (44%), Positives = 21/43 (48%)
 Frame = +1

Query: 292 SLSLAFVAAPAGANGWVAWALNPTGEGMAGAQALVALKGSGAA 420
           SL+  F     GANG  +    P G   AGA A  A  GSGAA
Sbjct: 55  SLAKRFRGGQGGANGASSGGKKPDGNATAGASA--AAVGSGAA 95

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>ABCB9_RAT (Q9QYJ4) ATP-binding cassette sub-family B member 9 precursor|
           (ATP-binding cassette transporter 9) (ABC transporter 9
           protein) (TAP-like protein) (TAPL)
          Length = 762

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 22/69 (31%), Positives = 28/69 (40%)
 Frame = +1

Query: 244 PQLGAALHWTYDESKSSLSLAFVAAPAGANGWVAWALNPTGEGMAGAQALVALKGSGAAA 423
           P   A   WTY    +S  L  + A    +   A AL P  EG  G     A + SGA  
Sbjct: 114 PWFWALFVWTYISLAASFLLWGLLATVRPD---AEALEPGNEGFHGEGGAPAEQASGATL 170

Query: 424 LTVRTYTSP 450
             + +YT P
Sbjct: 171 QKLLSYTKP 179

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>ABCB9_MOUSE (Q9JJ59) ATP-binding cassette sub-family B member 9 precursor|
           (ATP-binding cassette transporter 9) (ABC transporter 9
           protein) (TAP-like protein) (TAPL) (mABCB9)
          Length = 762

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 22/69 (31%), Positives = 28/69 (40%)
 Frame = +1

Query: 244 PQLGAALHWTYDESKSSLSLAFVAAPAGANGWVAWALNPTGEGMAGAQALVALKGSGAAA 423
           P   A   WTY    +S  L  + A    +   A AL P  EG  G     A + SGA  
Sbjct: 114 PWFWALFVWTYISLAASFLLWGLLATVRPD---AEALEPGNEGFHGEGGAPAEQASGATL 170

Query: 424 LTVRTYTSP 450
             + +YT P
Sbjct: 171 QKLLSYTKP 179

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>AP180_HUMAN (O60641) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein)
          Length = 907

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -2

Query: 422 AAAP--EPLSATSACAPAMPSPVGLSAQA---THPLAPAGAATNASERDDL 285
           AA+P   P ++  A APA P+PV  +  A     P AP+  +  A+   DL
Sbjct: 445 AASPGEAPAASEGAAAPATPTPVAAALDACSGNDPFAPSEGSAEAAPELDL 495

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>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -2

Query: 425 SAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERDDLDSS*VQCSAAP 252
           SA  P P S+T+  + A P P   S+      AP  ++T  S    + SS  + S+AP
Sbjct: 650 SAPVPTPSSSTTESSSA-PVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAP 706



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = -2

Query: 431 TVSAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERDDLDSS*VQCSAAP 252
           T S++AP   S T + +  +P+P   + +++   AP  ++T  S    + SS  + S+AP
Sbjct: 376 TESSSAPVTSSTTESSSAPVPTPSSSTTESSS--APVTSSTTESSSAPVTSSTTESSSAP 433



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = -2

Query: 431 TVSAAAPEPLSATSACAPAMPSPVGLSAQATHPLAPAGAATNASERDDLDSS*VQCSAAP 252
           T S++AP   S T + +  +P+P   + +++   AP  ++T  S    + SS  + S+AP
Sbjct: 337 TESSSAPVTSSTTESSSAPVPTPSSSTTESSS--APVTSSTTESSSAPVTSSTTESSSAP 394

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>K0174_HUMAN (P53990) Protein KIAA0174 (Putative MAPK-activating protein PM28)|
          Length = 364

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
 Frame = -2

Query: 446 DVYVLTVSAAAPEPLSATSACAPAMPS--------PVGLSAQATHPLAPAGAATNASERD 291
           D  + +     P P    SA  P+ P+        P   S   T P A AGA+T+ASE  
Sbjct: 289 DKNISSAQIVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPTASAGASTSASEDI 348

Query: 290 DLD 282
           D D
Sbjct: 349 DFD 351

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>AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein)
          Length = 915

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = -2

Query: 422 AAAP--EPLSATSACAPAMPSPVGLSAQA---THPLAPAGAATNASERDDLDSS*VQCSA 258
           AA+P   P ++  A APA P+PV  +  A     P AP+  +  A+   DL +     ++
Sbjct: 441 AASPGEAPAASEGATAPATPAPVAAALDACSGNDPFAPSEGSAEAAPELDLFAMKPPETS 500

Query: 257 APSCGRSSHLAYVFPA 210
           AP    ++  A   PA
Sbjct: 501 APVVTPTASTAPPVPA 516

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>AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein) (Phosphoprotein F1-20)
          Length = 901

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = -2

Query: 422 AAAP--EPLSATSACAPAMPSPVGLSAQA---THPLAPAGAATNASERDDLDSS*VQCSA 258
           AA+P   P ++  A APA P+PV  +  A     P AP+  +  A+   DL +     ++
Sbjct: 441 AASPGEAPAASEGATAPATPAPVAAALDACSGNDPFAPSEGSAEAAPELDLFAMKPPETS 500

Query: 257 APSCGRSSHLAYVFPA 210
           AP    ++  A   PA
Sbjct: 501 APVVTPTASTAPPVPA 516


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,198,613
Number of Sequences: 219361
Number of extensions: 521891
Number of successful extensions: 3327
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 3030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3291
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result