ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast64c06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474981.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 957 Score = 281 bits (142), Expect = 1e-72 Identities = 232/262 (88%) Strand = Plus / Plus Query: 156 tcagccccgcctccgacgaccgcttctgggacggcctgcgcaaccgcgtcgacaccatcc 215 |||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| Sbjct: 23 tcagccccgcctccgacgaccgcttctgggaccgcctccgcacccgcgtcgacaccatcc 82 Query: 216 tcgaggaccgccgcctcgtcgcctccgccgcgtccacgtgctcggtggcgtccgggcgcc 275 |||||||||||||||||||||| || |||| |||||||| ||||| |||| ||| Sbjct: 83 tcgaggaccgccgcctcgtcgctccccccgccgccacgtgcggggtggaatccgagcggg 142 Query: 276 ccaagcggctccgggaggactcgctgatgctggtccgcggcctcgactccgtcgccgcgt 335 ||||||||| |||||||||||||||||||||| || |||||||||||||||||||| | Sbjct: 143 ggaagcggctcagggaggactcgctgatgctggtgcgtggcctcgactccgtcgccgcct 202 Query: 336 cgctcgcgcagctctccgacaccctcaccgccgcccagaagggcgtgaacgctctggcga 395 |||| ||||||||||||||||||||||||||||| |||||||| ||||| || || || | Sbjct: 203 cgctggcgcagctctccgacaccctcaccgccgcgcagaagggagtgaatgcgctcgcca 262 Query: 396 cgtgctcgtcccacgcgaggga 417 ||||||| ||||| |||||||| Sbjct: 263 cgtgctcttcccaggcgaggga 284
>dbj|AK059410.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C06, full insert sequence Length = 1133 Score = 274 bits (138), Expect = 3e-70 Identities = 231/262 (88%) Strand = Plus / Plus Query: 156 tcagccccgcctccgacgaccgcttctgggacggcctgcgcaaccgcgtcgacaccatcc 215 |||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| Sbjct: 68 tcagccccgcctccgacgaccgcttctgggaccgcctccgcacccgcgtcgacaccatcc 127 Query: 216 tcgaggaccgccgcctcgtcgcctccgccgcgtccacgtgctcggtggcgtccgggcgcc 275 |||||||||||||||||||||| || |||| |||||||| ||||| |||| ||| Sbjct: 128 tcgaggaccgccgcctcgtcgctccccccgccgccacgtgcggggtggaatccgagcggg 187 Query: 276 ccaagcggctccgggaggactcgctgatgctggtccgcggcctcgactccgtcgccgcgt 335 ||||||||| |||||||||||||||||||||| || |||||||||||||||||||| Sbjct: 188 ggaagcggctcagggaggactcgctgatgctggtgcgtggcctcgactccgtcgccgccc 247 Query: 336 cgctcgcgcagctctccgacaccctcaccgccgcccagaagggcgtgaacgctctggcga 395 |||| ||||||||||||||||||||||||||||| |||||||| ||||| || || || | Sbjct: 248 cgctggcgcagctctccgacaccctcaccgccgcgcagaagggagtgaatgcgctcgcca 307 Query: 396 cgtgctcgtcccacgcgaggga 417 ||||||| ||||| |||||||| Sbjct: 308 cgtgctcttcccaggcgaggga 329
>emb|AL606996.3|OSJN00123 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0071D01, complete sequence Length = 78794 Score = 151 bits (76), Expect = 3e-33 Identities = 94/100 (94%) Strand = Plus / Minus Query: 278 aagcggctccgggaggactcgctgatgctggtccgcggcctcgactccgtcgccgcgtcg 337 ||||||||| |||||||||||||||||||||| || |||||||||||||||||||| ||| Sbjct: 78489 aagcggctcagggaggactcgctgatgctggtgcgtggcctcgactccgtcgccgcctcg 78430 Query: 338 ctcgcgcagctctccgacaccctcaccgccgcccagaagg 377 || ||||||||||||||||||||||||||||| ||||||| Sbjct: 78429 ctggcgcagctctccgacaccctcaccgccgcgcagaagg 78390 Score = 139 bits (70), Expect = 1e-29 Identities = 79/82 (96%) Strand = Plus / Minus Query: 156 tcagccccgcctccgacgaccgcttctgggacggcctgcgcaaccgcgtcgacaccatcc 215 |||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| Sbjct: 78698 tcagccccgcctccgacgaccgcttctgggaccgcctccgcacccgcgtcgacaccatcc 78639 Query: 216 tcgaggaccgccgcctcgtcgc 237 |||||||||||||||||||||| Sbjct: 78638 tcgaggaccgccgcctcgtcgc 78617
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 151 bits (76), Expect = 3e-33 Identities = 94/100 (94%) Strand = Plus / Minus Query: 278 aagcggctccgggaggactcgctgatgctggtccgcggcctcgactccgtcgccgcgtcg 337 ||||||||| |||||||||||||||||||||| || |||||||||||||||||||| ||| Sbjct: 8545920 aagcggctcagggaggactcgctgatgctggtgcgtggcctcgactccgtcgccgcctcg 8545861 Query: 338 ctcgcgcagctctccgacaccctcaccgccgcccagaagg 377 || ||||||||||||||||||||||||||||| ||||||| Sbjct: 8545860 ctggcgcagctctccgacaccctcaccgccgcgcagaagg 8545821 Score = 139 bits (70), Expect = 1e-29 Identities = 79/82 (96%) Strand = Plus / Minus Query: 156 tcagccccgcctccgacgaccgcttctgggacggcctgcgcaaccgcgtcgacaccatcc 215 |||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| Sbjct: 8546129 tcagccccgcctccgacgaccgcttctgggaccgcctccgcacccgcgtcgacaccatcc 8546070 Query: 216 tcgaggaccgccgcctcgtcgc 237 |||||||||||||||||||||| Sbjct: 8546069 tcgaggaccgccgcctcgtcgc 8546048 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 tggaggaggagcccgacgcg 448 |||||||||||||||||||| Sbjct: 1779023 tggaggaggagcccgacgcg 1779004
>emb|AL731598.2|OSJN00248 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065B15, complete sequence Length = 150007 Score = 151 bits (76), Expect = 3e-33 Identities = 94/100 (94%) Strand = Plus / Minus Query: 278 aagcggctccgggaggactcgctgatgctggtccgcggcctcgactccgtcgccgcgtcg 337 ||||||||| |||||||||||||||||||||| || |||||||||||||||||||| ||| Sbjct: 6363 aagcggctcagggaggactcgctgatgctggtgcgtggcctcgactccgtcgccgcctcg 6304 Query: 338 ctcgcgcagctctccgacaccctcaccgccgcccagaagg 377 || ||||||||||||||||||||||||||||| ||||||| Sbjct: 6303 ctggcgcagctctccgacaccctcaccgccgcgcagaagg 6264 Score = 139 bits (70), Expect = 1e-29 Identities = 79/82 (96%) Strand = Plus / Minus Query: 156 tcagccccgcctccgacgaccgcttctgggacggcctgcgcaaccgcgtcgacaccatcc 215 |||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| Sbjct: 6572 tcagccccgcctccgacgaccgcttctgggaccgcctccgcacccgcgtcgacaccatcc 6513 Query: 216 tcgaggaccgccgcctcgtcgc 237 |||||||||||||||||||||| Sbjct: 6512 tcgaggaccgccgcctcgtcgc 6491
>gb|AY657653.1| Synthetic construct Peudomonas aeruginosa clone FLH041463.01F PA4803 gene, partial cds Length = 618 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 459 gcggcggcgcctcgaccctggtcg 482 |||||||||||||||||||||||| Sbjct: 143 gcggcggcgcctcgaccctggtcg 166
>gb|AE004893.1| Pseudomonas aeruginosa PAO1, section 454 of 529 of the complete genome Length = 13324 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Minus Query: 459 gcggcggcgcctcgaccctggtcg 482 |||||||||||||||||||||||| Sbjct: 5869 gcggcggcgcctcgaccctggtcg 5846
>gb|AY622319.1| Mentha spicata limonene-3-hydroxylase (lim3h) mRNA, complete cds Length = 1491 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 199 ccgcgtcgacaccatcctcgagg 221 ||||||||||||||||||||||| Sbjct: 720 ccgcgtcgacaccatcctcgagg 742
>gb|AY281027.1| Mentha x gracilis limonene-3-hydroxylase mRNA, complete cds Length = 1732 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 199 ccgcgtcgacaccatcctcgagg 221 ||||||||||||||||||||||| Sbjct: 724 ccgcgtcgacaccatcctcgagg 746
>gb|AF124817.1|AF124817 Mentha x piperita cytochrome p450 isoform PM2 mRNA, complete cds Length = 1497 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 199 ccgcgtcgacaccatcctcgagg 221 ||||||||||||||||||||||| Sbjct: 723 ccgcgtcgacaccatcctcgagg 745
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 328 cgccgcgtcgctcgcgcagctc 349 |||||||||||||||||||||| Sbjct: 26264 cgccgcgtcgctcgcgcagctc 26285
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 167 tccgacgaccgcttctgggacg 188 |||||||||||||||||||||| Sbjct: 5955348 tccgacgaccgcttctgggacg 5955369
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 ccgtcgccgcgtcgctcgcgc 344 ||||||||||||||||||||| Sbjct: 461174 ccgtcgccgcgtcgctcgcgc 461154
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 ccgtcgccgcgtcgctcgcgc 344 ||||||||||||||||||||| Sbjct: 1780440 ccgtcgccgcgtcgctcgcgc 1780420
>gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, complete sequence Length = 256999 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 277 caagcggctccgggaggactc 297 ||||||||||||||||||||| Sbjct: 231957 caagcggctccgggaggactc 231977
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 ccgtcgccgcgtcgctcgcgc 344 ||||||||||||||||||||| Sbjct: 1003514 ccgtcgccgcgtcgctcgcgc 1003534
>gb|AC120373.10| Mus musculus chromosome 15, clone RP24-512O2, complete sequence Length = 159741 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 277 caagcggctccgggaggactc 297 ||||||||||||||||||||| Sbjct: 87486 caagcggctccgggaggactc 87466
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 cgtcgcctccgccgcgtccac 252 ||||||||||||||||||||| Sbjct: 4731443 cgtcgcctccgccgcgtccac 4731423
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 ccgacgaccgcttctgggacg 188 ||||||||||||||||||||| Sbjct: 8593069 ccgacgaccgcttctgggacg 8593049
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 ccgtcgccgcgtcgctcgcgc 344 ||||||||||||||||||||| Sbjct: 1302287 ccgtcgccgcgtcgctcgcgc 1302307 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cgccgcgtcgctcgcgcagc 347 |||||||||||||||||||| Sbjct: 2178715 cgccgcgtcgctcgcgcagc 2178734
>ref|XM_471138.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1416 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 tggaggaggagcccgacgcg 448 |||||||||||||||||||| Sbjct: 1037 tggaggaggagcccgacgcg 1056
>gb|BT018854.1| Zea mays clone EL01N0556B07.d mRNA sequence Length = 1562 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 ccgatggactccgccgcggcgtcc 145 |||||||||||||| ||||||||| Sbjct: 581 ccgatggactccgcggcggcgtcc 604
>gb|BT017305.1| Zea mays clone EL01N0316E09.c mRNA sequence Length = 1435 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 ccgccgcctcgtcgcctccgccgc 246 |||||||| ||||||||||||||| Sbjct: 160 ccgccgccgcgtcgcctccgccgc 183
>gb|AY596557.1| Saccharum officinarum clone SCCCCL3120B05, complete sequence Length = 1460 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 ccgccgcctcgtcgcctccgccgc 246 |||||||| ||||||||||||||| Sbjct: 209 ccgccgccgcgtcgcctccgccgc 232
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 gcggcggcgcctcgaccctg 478 |||||||||||||||||||| Sbjct: 2344751 gcggcggcgcctcgaccctg 2344732
>emb|BX842608.1|OSJN00298 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1340F09, complete sequence Length = 149449 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 tggaggaggagcccgacgcg 448 |||||||||||||||||||| Sbjct: 121975 tggaggaggagcccgacgcg 121956
>emb|AL662964.3|OSJN00161 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H09, complete sequence Length = 155672 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 tggaggaggagcccgacgcg 448 |||||||||||||||||||| Sbjct: 74290 tggaggaggagcccgacgcg 74271
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 tcgaggaccgccgcctcgtc 235 |||||||||||||||||||| Sbjct: 878465 tcgaggaccgccgcctcgtc 878446
>emb|AJ276219.1|SAU276219 Stigmatella aurantiaca ephA gene for putative epoxide hydrolase Length = 1587 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 gagcgcgagacggtggagga 435 |||||||||||||||||||| Sbjct: 520 gagcgcgagacggtggagga 539
>emb|AJ276218.1|SAU276218 Stigmatella aurantiaca hspA gene for heat shock protein Length = 3459 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 gagcgcgagacggtggagga 435 |||||||||||||||||||| Sbjct: 2940 gagcgcgagacggtggagga 2921
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gcctcgactccgtcgccgcg 334 |||||||||||||||||||| Sbjct: 4942068 gcctcgactccgtcgccgcg 4942049
>gb|AY442225.1| Streptomyces diastaticus polyketide rim gene cluster, partial sequence Length = 19055 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cccgtcgccgcgccgcacac 103 |||||||||||||||||||| Sbjct: 3025 cccgtcgccgcgccgcacac 3006
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 cgcctcgtcgcctccgccgc 246 |||||||||||||||||||| Sbjct: 17395770 cgcctcgtcgcctccgccgc 17395751
>gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055P24 genomic sequence, complete sequence Length = 134058 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 cgcctcgtcgcctccgccgc 246 |||||||||||||||||||| Sbjct: 24765 cgcctcgtcgcctccgccgc 24746
>gb|AF546152.1| Streptomyces sp. 100/Eco52 UnbL (unbL), UnbV (unbV), UnbU (unbU), PskE (pksE), and TebC (tebC) genes, complete cds Length = 10352 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 cgacaccctcaccgccgccc 371 |||||||||||||||||||| Sbjct: 7903 cgacaccctcaccgccgccc 7922
>dbj|AK107172.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-G04, full insert sequence Length = 1544 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 tggaggaggagcccgacgcg 448 |||||||||||||||||||| Sbjct: 1078 tggaggaggagcccgacgcg 1097
>dbj|AK099202.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023116K03, full insert sequence Length = 1455 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 cgcctcgtcgcctccgccgc 246 |||||||||||||||||||| Sbjct: 57 cgcctcgtcgcctccgccgc 76
>dbj|AK072265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006K06, full insert sequence Length = 1461 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 cgcctcgtcgcctccgccgc 246 |||||||||||||||||||| Sbjct: 66 cgcctcgtcgcctccgccgc 85
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 gcgcgagacggtggaggagg 437 |||||||||||||||||||| Sbjct: 986911 gcgcgagacggtggaggagg 986930
>dbj|AK061181.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-D05, full insert sequence Length = 1132 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 cgcctcgtcgcctccgccgc 246 |||||||||||||||||||| Sbjct: 29 cgcctcgtcgcctccgccgc 48
>gb|AY103781.1| Zea mays PCO113646 mRNA sequence Length = 1654 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 ccgccgcctcgtcgcctccgccgc 246 |||||||| ||||||||||||||| Sbjct: 352 ccgccgccgcgtcgcctccgccgc 375
>gb|AF065244.1|AF065244 Agrobacterium tumefaciens strain K84 plasmid pAtK84b ornithine cyclodeaminase (ocd) gene, partial cds; conjugal transfer regulatory protein (traR) and SmoC-like regulatory protein (sml) genes, complete cds; mannopine synthesis-like protein (msl) gene, partial cds; and unknown genes Length = 4860 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ccgcggcctcgactccgtcg 329 |||||||||||||||||||| Sbjct: 4496 ccgcggcctcgactccgtcg 4515
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 cgcctcgtcgcctccgccgc 246 |||||||||||||||||||| Sbjct: 17404810 cgcctcgtcgcctccgccgc 17404791
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gggaggactcgctgatgctg 307 |||||||||||||||||||| Sbjct: 909763 gggaggactcgctgatgctg 909782
>gb|M30949.1|ORARGIT Orangutan rRNA gene internal transcribed spacer 1 (ITS1) Length = 1070 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 ccgccgcggcgtcctccctcgtcg 155 ||||||||||||||| |||||||| Sbjct: 31 ccgccgcggcgtccttcctcgtcg 54 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,411,867 Number of Sequences: 3902068 Number of extensions: 2411867 Number of successful extensions: 60610 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58679 Number of HSP's gapped (non-prelim): 1931 length of query: 496 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 474 effective length of database: 17,147,199,772 effective search space: 8127772691928 effective search space used: 8127772691928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
