ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast64c04 |
|---|---|
| Clone Library Name | barley_pub |
>PLC_LISMO (P34024) 1-phosphatidylinositol phosphodiesterase precursor (EC| 4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase) (Phosphatidylinositol-specific phospholipase C) (PI-PLC) Length = 317 Score = 57.0 bits (136), Expect = 2e-08 Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Frame = +2 Query: 125 KTWMAELGPERLRVHQVVWPGTHNSATAEIGVPF-VTRPFAQCQSLSVYDQLATGCRLLD 301 K WM+ L P+ + + PGTH++ + + + +T+P AQ Q++S+Y QL G R +D Sbjct: 46 KQWMSAL-PDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYID 104 Query: 302 VRVQKDRRVCHGPLVASYTVDVVIDDVRRF 391 +R + + + HGP+ + ++ V++ + +F Sbjct: 105 IRAKDNLNIYHGPIFLNASLSGVLETITQF 134
>PLC_BACTU (P08954) 1-phosphatidylinositol phosphodiesterase precursor (EC| 4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase) (Phosphatidylinositol-specific phospholipase C) (PI-PLC) Length = 329 Score = 37.4 bits (85), Expect = 0.017 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%) Frame = +2 Query: 131 WMAELGPERLRVHQVVWPGTHNSATAEIGVPFVTRPFAQCQSLSVYDQLATGCRLLDV-- 304 WM + P+ + + ++ PGTH+S T ++ P + + + Q Q+ G R+ D+ Sbjct: 44 WMQPI-PDNIPLARISIPGTHDSGTFKLQNP-IKQVWGMTQEYDFRYQMDHGARIFDIRG 101 Query: 305 RVQKDRRVC--HGPLVASYTVDVVIDDVRRF 391 R+ D + HGPL T+ I++ ++F Sbjct: 102 RLTDDNTIVLHHGPLYLYVTLHEFINEAKQF 132
>PLC_BACCE (P14262) 1-phosphatidylinositol phosphodiesterase precursor (EC| 4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase) (Phosphatidylinositol-specific phospholipase C) (PI-PLC) Length = 329 Score = 37.0 bits (84), Expect = 0.022 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%) Frame = +2 Query: 131 WMAELGPERLRVHQVVWPGTHNSATAEIGVPFVTRPFAQCQSLSVYDQLATGCRLLDV-- 304 WM + P+ + + ++ PGTH+S T ++ P + + + Q Q+ G R+ D+ Sbjct: 44 WMQPI-PDSIPLARISIPGTHDSGTFKLQNP-IKQVWGMTQEYDFRYQMDHGARIFDIRG 101 Query: 305 RVQKDRRVC--HGPLVASYTVDVVIDDVRRF 391 R+ D + HGPL T+ I++ ++F Sbjct: 102 RLTDDNTIVLHHGPLYLYVTLHEFINEAKQF 132
>GA2L2_HUMAN (Q8NHY3) GAS2-like protein 2 (Growth arrest-specific 2-like 2)| (GAS2-related protein on chromosome 17) (GAR17 protein) Length = 880 Score = 34.3 bits (77), Expect = 0.14 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = -1 Query: 165 TRSRSGPSSAIHVLRSAGRWPDPGKSWPEADRRLA 61 TRS P S +++ R AG+WP+PG + +A + LA Sbjct: 625 TRSGVIPRSGVYIPRLAGQWPEPGGPYDKAIQELA 659
>GA2L2_MOUSE (Q5SSG4) GAS2-like protein 2 (Growth arrest-specific 2-like 2)| Length = 860 Score = 33.1 bits (74), Expect = 0.31 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -1 Query: 165 TRSRSGPSSAIHVLRSAGRWPDPGKSWPEADRRL 64 TRS++ P S ++V GRWP+PG + + R L Sbjct: 610 TRSQAIPRSGVYVPSLGGRWPEPGGPYDKVIREL 643
>MUTS_THET8 (Q56239) DNA mismatch repair protein mutS| Length = 818 Score = 31.2 bits (69), Expect = 1.2 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Frame = -3 Query: 253 LALREGAGDE-GHADLGRGGVVGARPHHLVHPQPL--RPELRHPRLAVRRPVAGP---WE 92 LALR G +A +GG + RP L P PE L V P+ G + Sbjct: 222 LALRRAQGALLAYARATQGGALSVRPFRLYDPGAFVRLPEASLKALEVFEPLRGQDTLFG 281 Query: 91 VLARGRQAPGQRLLLA 44 VL R APG+RLL A Sbjct: 282 VLDETRTAPGRRLLQA 297
>MUTS_THET2 (P61671) DNA mismatch repair protein mutS| Length = 811 Score = 31.2 bits (69), Expect = 1.2 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Frame = -3 Query: 253 LALREGAGDE-GHADLGRGGVVGARPHHLVHPQPL--RPELRHPRLAVRRPVAGP---WE 92 LALR G +A +GG + RP L P PE L V P+ G + Sbjct: 215 LALRRAQGALLAYARATQGGALSVRPFRLYDPGAFVRLPEASLKALEVFEPLRGQDTLFG 274 Query: 91 VLARGRQAPGQRLLLA 44 VL R APG+RLL A Sbjct: 275 VLDETRTAPGRRLLQA 290
>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein| kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1243 Score = 30.8 bits (68), Expect = 1.6 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = -3 Query: 277 ELVVDGERLALREGAGDEGHADLGRGGVVGARPHHLVHPQPL 152 E + + +R A GAG E D G+ VG P L HP P+ Sbjct: 1068 EALAESDRAAEGLGAGVEEEGDDGKEPQVGGSPQPLSHPSPV 1109
>PURL_THEMA (Q9X0X3) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 603 Score = 30.8 bits (68), Expect = 1.6 Identities = 19/47 (40%), Positives = 24/47 (51%) Frame = -3 Query: 226 EGHADLGRGGVVGARPHHLVHPQPLRPELRHPRLAVRRPVAGPWEVL 86 EG DLG GGV+ A LV L + R+ +R P PWE+L Sbjct: 232 EGAQDLGAGGVLSA-TSELVAKGNLGAIVHLDRVPLREPDMEPWEIL 277
>MUTS_THECA (Q9ZIX6) DNA mismatch repair protein mutS| Length = 817 Score = 30.0 bits (66), Expect = 2.7 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Frame = -3 Query: 220 HADLGRGGVVGARPHHLVHPQPL--RPELRHPRLAVRRPVAGP---WEVLARGRQAPGQR 56 +A +GG + RP L P + PE L V P+ G + VL R APG+R Sbjct: 232 YARATQGGALSVRPFRLYDPGAIVRLPEASLKALEVFEPLRGQDTLFGVLDETRTAPGRR 291 Query: 55 LLLA 44 LL A Sbjct: 292 LLQA 295
>END4_BACHK (Q6HDN3) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 298 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -3 Query: 238 GAGDEGHADLGRGGVVGARPHHLVHPQPLRPELRHPRLAVRRPVAG 101 GAG + H ++G G + HH+VH P+L H + P G Sbjct: 224 GAGKDRHENIGFGHIGYKALHHIVH----HPQLTHVPKILETPYVG 265
>END4_BACCZ (Q634Q3) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 298 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -3 Query: 238 GAGDEGHADLGRGGVVGARPHHLVHPQPLRPELRHPRLAVRRPVAG 101 GAG + H ++G G + HH+VH P+L H + P G Sbjct: 224 GAGKDRHENIGFGHIGYKALHHIVH----HPQLTHVPKILETPYVG 265
>END4_BACCR (Q818H3) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 298 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -3 Query: 238 GAGDEGHADLGRGGVVGARPHHLVHPQPLRPELRHPRLAVRRPVAG 101 GAG + H ++G G + HH+VH P+L H + P G Sbjct: 224 GAGKDRHENIGFGHIGYKALHHIVH----HPQLMHVPKILETPYVG 265
>END4_BACAN (Q81LV1) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 298 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -3 Query: 238 GAGDEGHADLGRGGVVGARPHHLVHPQPLRPELRHPRLAVRRPVAG 101 GAG + H ++G G + HH+VH P+L H + P G Sbjct: 224 GAGKDRHENIGFGHIGYKALHHIVH----HPQLTHVPKILETPYVG 265
>XKR5_MOUSE (Q5GH66) XK-related protein 5| Length = 676 Score = 28.9 bits (63), Expect = 5.9 Identities = 26/100 (26%), Positives = 44/100 (44%) Frame = +2 Query: 2 AFFSGQVNRVKEVASQQQALARRLSASGQDFPGSGHRPADRKTWMAELGPERLRVHQVVW 181 +FFS + ++A + +++R +A G D PG P + +L + L HQ + Sbjct: 398 SFFSHHHWLLLKLALKTGSVSRINAALGGDSPGCSCPPLLGSSQHCDLQRKPLFSHQDLP 457 Query: 182 PGTHNSATAEIGVPFVTRPFAQCQSLSVYDQLATGCRLLD 301 + T E G +V P A+ +SL L+ L D Sbjct: 458 SSPCDPLTLEKGSEYVGAPKAEMESLETSSYLSFASELED 497
>MTMR1_MOUSE (Q9Z2C4) Myotubularin-related protein 1 (EC 3.1.3.-)| Length = 669 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -3 Query: 277 ELVVDGERLALREGAGDEGHADLGRGGV 194 E + G R ALR G GD+ HAD R + Sbjct: 477 EWISFGHRFALRVGHGDDNHADADRSPI 504
>ATX7_MOUSE (Q8R4I1) Ataxin-7 (Spinocerebellar ataxia type 7 protein homolog)| Length = 867 Score = 28.9 bits (63), Expect = 5.9 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Frame = -3 Query: 247 LREGAGDE--GHADLGRGGVVGARPHHLVHPQPLRPELRHPRLAVRRPVA 104 + E A D+ G GG AR PQPL+P+ +HP L RRP A Sbjct: 1 MSERAADDVRGEPRRAAGGAAAARQQQQ-QPQPLQPQRQHPPL--RRPRA 47
>CO2_PANTR (Q8SQ74) Complement C2 precursor (EC 3.4.21.43) (C3/C5 convertase)| [Contains: Complement C2b fragment; Complement C2a fragment] Length = 752 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = -1 Query: 192 WVPGHT-TWCTRSRSGPSSAIHVLRSAGRWPDPGKSWPEADRRLASACC 49 W PG T+ PS A + +S+G+W PG A R L+ A C Sbjct: 41 WAPGSLLTYSCPQGLYPSPASRLCKSSGQWQTPG-----ATRSLSKAVC 84
>CO2_HUMAN (P06681) Complement C2 precursor (EC 3.4.21.43) (C3/C5 convertase)| [Contains: Complement C2b fragment; Complement C2a fragment] Length = 752 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = -1 Query: 192 WVPGHT-TWCTRSRSGPSSAIHVLRSAGRWPDPGKSWPEADRRLASACC 49 W PG T+ PS A + +S+G+W PG A R L+ A C Sbjct: 41 WAPGSLLTYSCPQGLYPSPASRLCKSSGQWQTPG-----ATRSLSKAVC 84
>CO2_GORGO (Q863A0) Complement C2 precursor (EC 3.4.21.43) (C3/C5 convertase)| [Contains: Complement C2b fragment; Complement C2a fragment] Length = 752 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = -1 Query: 192 WVPGHT-TWCTRSRSGPSSAIHVLRSAGRWPDPGKSWPEADRRLASACC 49 W PG T+ PS A + +S+G+W PG A R L+ A C Sbjct: 41 WAPGSLLTYSCPQGLYPSPASRLCKSSGQWQTPG-----ATRSLSKAVC 84
>DAPB_BRAJA (Q89WK2) Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR)| Length = 271 Score = 28.5 bits (62), Expect = 7.7 Identities = 27/85 (31%), Positives = 36/85 (42%) Frame = -3 Query: 280 GELVVDGERLALREGAGDEGHADLGRGGVVGARPHHLVHPQPLRPELRHPRLAVRRPVAG 101 G ++ G+ A G + HAD GR G+ GAR + LR +V G Sbjct: 167 GTALMLGQAAAAGRGISLDEHADRGRDGITGARKPGNIGFASLRGGTAAGDHSV--SFLG 224 Query: 100 PWEVLARGRQAPGQRLLLARHFLDA 26 P+E L QA R+L A L A Sbjct: 225 PFERLTLSHQAE-DRMLFAHGALKA 248 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,312,206 Number of Sequences: 219361 Number of extensions: 851949 Number of successful extensions: 3229 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3228 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
