ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast64c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FIBA_RAT (P06399) Fibrinogen alpha chain precursor [Contains: Fi... 29 2.6
2YMD8_YEAST (Q03697) Hypothetical 49.6 kDa protein in CAT2-AMD1 i... 29 3.4
3SMS1_CHICK (Q7T3T4) Phosphatidylcholine:ceramide cholinephosphot... 28 5.8
4SMS1_MOUSE (Q8VCQ6) Phosphatidylcholine:ceramide cholinephosphot... 27 9.8
5SMS1_HUMAN (Q86VZ5) Phosphatidylcholine:ceramide cholinephosphot... 27 9.8
6SWF1_YEAST (Q04629) Palmitoyltransferase SWF1 (EC 2.3.1.-) (Spor... 27 9.8
7TIE1_MOUSE (Q06806) Tyrosine-protein kinase receptor Tie-1 precu... 27 9.8

>FIBA_RAT (P06399) Fibrinogen alpha chain precursor [Contains: Fibrinopeptide|
           A]
          Length = 782

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 117 GGSGSGWWRPGCVRACARGDSGLVDSGVEADLRIWGWG 4
           G  GSG+WRPG   + + G+ G   +G + D   WG G
Sbjct: 299 GHGGSGYWRPGSSGSGSDGNWGSGTTGSD-DTGTWGAG 335



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>YMD8_YEAST (Q03697) Hypothetical 49.6 kDa protein in CAT2-AMD1 intergenic|
           region
          Length = 442

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 233 YVAVWIFLSFAVIVYNKYILDPK 301
           +V  W F S A+ +YN+++ DPK
Sbjct: 9   FVFGWYFCSIALSIYNRWMFDPK 31



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>SMS1_CHICK (Q7T3T4) Phosphatidylcholine:ceramide cholinephosphotransferase 1|
           (EC 2.7.-.-) (Sphingomyelin synthase 1) (MOB protein)
          Length = 417

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 194 SESVMRKVLLSYCYVAVWIFLSFAVIVYNKYILDPKMYNWPFP 322
           ++ V+++   +     VW +  F     N   + P+ Y+WPFP
Sbjct: 356 NQQVLKEASQTNLLARVWWYKPFQYFEKNVQGIVPRSYHWPFP 398



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>SMS1_MOUSE (Q8VCQ6) Phosphatidylcholine:ceramide cholinephosphotransferase 1|
           (EC 2.7.-.-) (Transmembrane protein 23) (Sphingomyelin
           synthase 1) (Mob protein)
          Length = 419

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 194 SESVMRKVLLSYCYVAVWIFLSFAVIVYNKYILDPKMYNWPFP 322
           ++ V+++         VW +  F     N   + P+ Y+WPFP
Sbjct: 358 NQQVLKEASQMNLLARVWWYRPFQYFEKNVQGIVPRSYHWPFP 400



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>SMS1_HUMAN (Q86VZ5) Phosphatidylcholine:ceramide cholinephosphotransferase 1|
           (EC 2.7.-.-) (Transmembrane protein 23) (Sphingomyelin
           synthase 1) (Mob protein)
          Length = 419

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 194 SESVMRKVLLSYCYVAVWIFLSFAVIVYNKYILDPKMYNWPFP 322
           ++ V+++         VW +  F     N   + P+ Y+WPFP
Sbjct: 358 NQQVLKEASQMNLLARVWWYRPFQYFEKNVQGIVPRSYHWPFP 400



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>SWF1_YEAST (Q04629) Palmitoyltransferase SWF1 (EC 2.3.1.-) (Spore wall|
           formation protein 1)
          Length = 336

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 215 VLLSYCYVAVWIFLSFAVIVYNKYILDPKMYNW 313
           +LLS  + + W F +F   V+  +++D + Y W
Sbjct: 17  ILLSPVFKSTWPFSTFYRNVFQPFLVDDQKYRW 49



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>TIE1_MOUSE (Q06806) Tyrosine-protein kinase receptor Tie-1 precursor (EC|
           2.7.10.1)
          Length = 1134

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 114 GSGSGWWRPGCVRAC 70
           G G+G W PGCV+ C
Sbjct: 212 GCGAGRWGPGCVKDC 226


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,750,100
Number of Sequences: 219361
Number of extensions: 221168
Number of successful extensions: 555
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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