ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast64b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK121995.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
2gb|AC135502.4| Oryza sativa chromosome 3 BAC OSJNBb0085A04 genom... 62 2e-06
3gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 62 2e-06
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 2e-06
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
6gb|AF272758.1|AF272758 Zea mays kinesin heavy chain (KIN13) mRNA... 58 3e-05
7ref|XM_312233.2| Anopheles gambiae str. PEST ENSANGP00000002724 ... 44 0.42
8gb|AC124427.5| Mus musculus BAC clone RP24-232N5 from chromosome... 42 1.7
9gb|AC123534.3| Mus musculus BAC clone RP23-356I5 from chromosome... 42 1.7
10emb|AL162430.15| Human DNA sequence from clone RP11-296A18 on ch... 42 1.7
11gb|AC097470.3| Homo sapiens BAC clone RP11-65E19 from 4, complet... 42 1.7
12gb|AY815754.1| Schistosoma japonicum SJCHGC05764 protein mRNA, c... 40 6.5
13emb|AL355381.11| Human DNA sequence from clone RP11-726A23 on ch... 40 6.5
14emb|X03774.1|HALDC Hafnia alvei gene for lysine decarboxylase (LDC) 40 6.5
15gb|AC153626.5| Mus musculus 6 BAC RP23-245J24 (Roswell Park Canc... 40 6.5
16gb|AC013438.6| Homo sapiens BAC clone RP11-218M2 from 2, complet... 40 6.5
17gb|AC131206.2| Homo sapiens 12 BAC RP11-157G21 (Roswell Park Can... 40 6.5
18dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 6.5
19emb|BX072536.4| Mouse DNA sequence from clone RP23-5A21 on chrom... 40 6.5

>dbj|AK121995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110A05, full
            insert sequence
          Length = 3726

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Plus

                                                                        
Query: 195  gaagctgtatgtgaagaacaggcagctaagatcaaggaactgagcaacttgattgagcaa 254
            |||||| |||||||||||||||| | |||||||||||| |||||||| ||| |||| |||
Sbjct: 2446 gaagctttatgtgaagaacaggccgataagatcaaggagctgagcaatttggttgaccaa 2505

                                
Query: 255  caaaagaagggatcagaaga 274
             | |||||| | ||||||||
Sbjct: 2506 tataagaagtgttcagaaga 2525



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>gb|AC135502.4| Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence,
            complete sequence
          Length = 132292

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 195  gaagctgtatgtgaagaacaggcagctaagatcaaggaactgagcaa 241
            |||||| |||||||||||||||| | |||||||||||| ||||||||
Sbjct: 1606 gaagctttatgtgaagaacaggccgataagatcaaggagctgagcaa 1560



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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
              sequence
          Length = 190055

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                             
Query: 195    gaagctgtatgtgaagaacaggcagctaagatcaaggaactgagcaa 241
              |||||| |||||||||||||||| | |||||||||||| ||||||||
Sbjct: 189623 gaagctttatgtgaagaacaggccgataagatcaaggagctgagcaa 189577



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                               
Query: 195      gaagctgtatgtgaagaacaggcagctaagatcaaggaactgagcaa 241
                |||||| |||||||||||||||| | |||||||||||| ||||||||
Sbjct: 21496712 gaagctttatgtgaagaacaggccgataagatcaaggagctgagcaa 21496666



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                               
Query: 195      gaagctgtatgtgaagaacaggcagctaagatcaaggaactgagcaa 241
                |||||| |||||||||||||||| | |||||||||||| ||||||||
Sbjct: 21489741 gaagctttatgtgaagaacaggccgataagatcaaggagctgagcaa 21489695



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>gb|AF272758.1|AF272758 Zea mays kinesin heavy chain (KIN13) mRNA, partial cds
          Length = 2798

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 426  agccttctggaccagataaggaacggcagcacggaccagga 466
            |||||||| |||||| |||||||||||||||| ||||||||
Sbjct: 1798 agccttcttgaccagttaaggaacggcagcacagaccagga 1838



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>ref|XM_312233.2| Anopheles gambiae str. PEST ENSANGP00000002724 (ENSANGG00000002255),
            partial mRNA
          Length = 2358

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 364  gcgaaatccagaagctgaagga 385
            ||||||||||||||||||||||
Sbjct: 1124 gcgaaatccagaagctgaagga 1145



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>gb|AC124427.5| Mus musculus BAC clone RP24-232N5 from chromosome 8, complete sequence
          Length = 205525

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 253    aacaaaagaagggatcagaag 273
              |||||||||||||||||||||
Sbjct: 154840 aacaaaagaagggatcagaag 154820



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>gb|AC123534.3| Mus musculus BAC clone RP23-356I5 from chromosome 14, complete sequence
          Length = 205222

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 25    gttcatcctgcaagaaagcaa 45
             |||||||||||||||||||||
Sbjct: 92197 gttcatcctgcaagaaagcaa 92177



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>emb|AL162430.15| Human DNA sequence from clone RP11-296A18 on chromosome 1 Contains for
             novel genes, a cofilin 1 (non-muscle) (CFL1) pseudogene,
             the RNF11 gene for ring finger protein 11, a ribosomal
             protein S2 (RPS2) pseudogene and the 3' end of the C1orf34
             gene for chromosome 1 open reading frame 34, complete
             sequence
          Length = 211791

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 366   gaaatccagaagctgaaggat 386
             |||||||||||||||||||||
Sbjct: 58320 gaaatccagaagctgaaggat 58340



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>gb|AC097470.3| Homo sapiens BAC clone RP11-65E19 from 4, complete sequence
          Length = 110702

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 41   agcaatggatacaaatgatga 61
            |||||||||||||||||||||
Sbjct: 6265 agcaatggatacaaatgatga 6285



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>gb|AY815754.1| Schistosoma japonicum SJCHGC05764 protein mRNA, complete cds
          Length = 581

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 366 gaaatccagaagctgaaggatcaa 389
           |||||||||||| |||||||||||
Sbjct: 319 gaaatccagaagttgaaggatcaa 342



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>emb|AL355381.11| Human DNA sequence from clone RP11-726A23 on chromosome X, complete
              sequence
          Length = 138653

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    aacaggcagctaagatcaag 230
              ||||||||||||||||||||
Sbjct: 119172 aacaggcagctaagatcaag 119153



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>emb|X03774.1|HALDC Hafnia alvei gene for lysine decarboxylase (LDC)
          Length = 2961

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  ctgaacaatgtgaggatagc 323
            ||||||||||||||||||||
Sbjct: 2776 ctgaacaatgtgaggatagc 2757



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>gb|AC153626.5| Mus musculus 6 BAC RP23-245J24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 190365

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     atgatgacctttcagaggac 74
              ||||||||||||||||||||
Sbjct: 122831 atgatgacctttcagaggac 122812



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>gb|AC013438.6| Homo sapiens BAC clone RP11-218M2 from 2, complete sequence
          Length = 65971

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 290   tgaagataagattgctgaacaatg 313
             ||||||| ||||||||||||||||
Sbjct: 24908 tgaagatgagattgctgaacaatg 24885



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>gb|AC131206.2| Homo sapiens 12 BAC RP11-157G21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177260

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   attgagcaacaaaagaaggg 265
             ||||||||||||||||||||
Sbjct: 35669 attgagcaacaaaagaaggg 35688



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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 325     ggacgccactcgatgtgtat 344
               ||||||||||||||||||||
Sbjct: 2138587 ggacgccactcgatgtgtat 2138606



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>emb|BX072536.4| Mouse DNA sequence from clone RP23-5A21 on chromosome X, complete
              sequence
          Length = 246587

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 30     tcctgcaagaaagcaatggataca 53
              |||||||| |||||||||||||||
Sbjct: 241320 tcctgcaacaaagcaatggataca 241297


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,134,930
Number of Sequences: 3902068
Number of extensions: 4134930
Number of successful extensions: 75991
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75899
Number of HSP's gapped (non-prelim): 92
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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