| Clone Name | bast64b08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110A05, full insert sequence Length = 3726 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 195 gaagctgtatgtgaagaacaggcagctaagatcaaggaactgagcaacttgattgagcaa 254 |||||| |||||||||||||||| | |||||||||||| |||||||| ||| |||| ||| Sbjct: 2446 gaagctttatgtgaagaacaggccgataagatcaaggagctgagcaatttggttgaccaa 2505 Query: 255 caaaagaagggatcagaaga 274 | |||||| | |||||||| Sbjct: 2506 tataagaagtgttcagaaga 2525
>gb|AC135502.4| Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence, complete sequence Length = 132292 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 195 gaagctgtatgtgaagaacaggcagctaagatcaaggaactgagcaa 241 |||||| |||||||||||||||| | |||||||||||| |||||||| Sbjct: 1606 gaagctttatgtgaagaacaggccgataagatcaaggagctgagcaa 1560
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 195 gaagctgtatgtgaagaacaggcagctaagatcaaggaactgagcaa 241 |||||| |||||||||||||||| | |||||||||||| |||||||| Sbjct: 189623 gaagctttatgtgaagaacaggccgataagatcaaggagctgagcaa 189577
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 195 gaagctgtatgtgaagaacaggcagctaagatcaaggaactgagcaa 241 |||||| |||||||||||||||| | |||||||||||| |||||||| Sbjct: 21496712 gaagctttatgtgaagaacaggccgataagatcaaggagctgagcaa 21496666
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 195 gaagctgtatgtgaagaacaggcagctaagatcaaggaactgagcaa 241 |||||| |||||||||||||||| | |||||||||||| |||||||| Sbjct: 21489741 gaagctttatgtgaagaacaggccgataagatcaaggagctgagcaa 21489695
>gb|AF272758.1|AF272758 Zea mays kinesin heavy chain (KIN13) mRNA, partial cds Length = 2798 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 426 agccttctggaccagataaggaacggcagcacggaccagga 466 |||||||| |||||| |||||||||||||||| |||||||| Sbjct: 1798 agccttcttgaccagttaaggaacggcagcacagaccagga 1838
>ref|XM_312233.2| Anopheles gambiae str. PEST ENSANGP00000002724 (ENSANGG00000002255), partial mRNA Length = 2358 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 364 gcgaaatccagaagctgaagga 385 |||||||||||||||||||||| Sbjct: 1124 gcgaaatccagaagctgaagga 1145
>gb|AC124427.5| Mus musculus BAC clone RP24-232N5 from chromosome 8, complete sequence Length = 205525 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 aacaaaagaagggatcagaag 273 ||||||||||||||||||||| Sbjct: 154840 aacaaaagaagggatcagaag 154820
>gb|AC123534.3| Mus musculus BAC clone RP23-356I5 from chromosome 14, complete sequence Length = 205222 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 gttcatcctgcaagaaagcaa 45 ||||||||||||||||||||| Sbjct: 92197 gttcatcctgcaagaaagcaa 92177
>emb|AL162430.15| Human DNA sequence from clone RP11-296A18 on chromosome 1 Contains for novel genes, a cofilin 1 (non-muscle) (CFL1) pseudogene, the RNF11 gene for ring finger protein 11, a ribosomal protein S2 (RPS2) pseudogene and the 3' end of the C1orf34 gene for chromosome 1 open reading frame 34, complete sequence Length = 211791 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 gaaatccagaagctgaaggat 386 ||||||||||||||||||||| Sbjct: 58320 gaaatccagaagctgaaggat 58340
>gb|AC097470.3| Homo sapiens BAC clone RP11-65E19 from 4, complete sequence Length = 110702 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 agcaatggatacaaatgatga 61 ||||||||||||||||||||| Sbjct: 6265 agcaatggatacaaatgatga 6285
>gb|AY815754.1| Schistosoma japonicum SJCHGC05764 protein mRNA, complete cds Length = 581 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 gaaatccagaagctgaaggatcaa 389 |||||||||||| ||||||||||| Sbjct: 319 gaaatccagaagttgaaggatcaa 342
>emb|AL355381.11| Human DNA sequence from clone RP11-726A23 on chromosome X, complete sequence Length = 138653 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 aacaggcagctaagatcaag 230 |||||||||||||||||||| Sbjct: 119172 aacaggcagctaagatcaag 119153
>emb|X03774.1|HALDC Hafnia alvei gene for lysine decarboxylase (LDC) Length = 2961 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 ctgaacaatgtgaggatagc 323 |||||||||||||||||||| Sbjct: 2776 ctgaacaatgtgaggatagc 2757
>gb|AC153626.5| Mus musculus 6 BAC RP23-245J24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190365 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 atgatgacctttcagaggac 74 |||||||||||||||||||| Sbjct: 122831 atgatgacctttcagaggac 122812
>gb|AC013438.6| Homo sapiens BAC clone RP11-218M2 from 2, complete sequence Length = 65971 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 tgaagataagattgctgaacaatg 313 ||||||| |||||||||||||||| Sbjct: 24908 tgaagatgagattgctgaacaatg 24885
>gb|AC131206.2| Homo sapiens 12 BAC RP11-157G21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177260 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 attgagcaacaaaagaaggg 265 |||||||||||||||||||| Sbjct: 35669 attgagcaacaaaagaaggg 35688
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 ggacgccactcgatgtgtat 344 |||||||||||||||||||| Sbjct: 2138587 ggacgccactcgatgtgtat 2138606
>emb|BX072536.4| Mouse DNA sequence from clone RP23-5A21 on chromosome X, complete sequence Length = 246587 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 tcctgcaagaaagcaatggataca 53 |||||||| ||||||||||||||| Sbjct: 241320 tcctgcaacaaagcaatggataca 241297 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,134,930 Number of Sequences: 3902068 Number of extensions: 4134930 Number of successful extensions: 75991 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75899 Number of HSP's gapped (non-prelim): 92 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)