ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast64b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AXN2_MOUSE (O88566) Axin-2 (Axis inhibition protein 2) (Conducti... 32 1.2
2RDRP_YOMV (Q66220) RNA-directed RNA polymerase (EC 2.7.7.48) (18... 29 7.9

>AXN2_MOUSE (O88566) Axin-2 (Axis inhibition protein 2) (Conductin) (Axin-like|
           protein) (Axil)
          Length = 840

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 426 LPRMXSQCREQGIKIDGRESGLAAAGGGEQVEERAGEQRSD 304
           LP+  ++  E G+ +  R+ G+++A GG Q+    G++  D
Sbjct: 576 LPKRNAKGTEPGLALSARDGGMSSAAGGPQLPGEEGDRSQD 616



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>RDRP_YOMV (Q66220) RNA-directed RNA polymerase (EC 2.7.7.48) (182 kDa protein)|
            [Contains: Methyltransferase/RNA helicase (MT/HEL) (125
            kDa protein)]
          Length = 1597

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 471  PLEIVSNAPHFVLLALPRMXSQCREQGIKID 379
            PLEI+S A   VL+AL R  ++C+   + +D
Sbjct: 1046 PLEIISRASPHVLVALTRHTTRCKYYTVVLD 1076


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,674,129
Number of Sequences: 219361
Number of extensions: 425354
Number of successful extensions: 1410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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