ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast64b05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470383.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1746 Score = 167 bits (84), Expect = 4e-38 Identities = 313/389 (80%), Gaps = 3/389 (0%) Strand = Plus / Plus Query: 91 cgcgccgtcgagggctacgcgctcttcttcgacgacctcctctcgcggtcccatgcgtgg 150 ||||||| |||||||| |||||||||||||||||||||||| |||||| | || ||| || Sbjct: 268 cgcgccgccgagggcttcgcgctcttcttcgacgacctcctgtcgcgggcgcaggcgcgg 327 Query: 151 gactggttctccgacgtgctcccccgcctcgtgcgcgtcctcctccgcctccccgcgctg 210 ||||||||| | |||| |||| ||||| ||| ||||||||||||||||| ||||| Sbjct: 328 gactggttcgaccacgtcgccccctccctcgcccgcctcctcctccgcctccccacgctg 387 Query: 211 ctcgaggaccactacgccgccgcccgggccgcgac---cgggctccgcctccttgggcct 267 ||||||| ||||||| ||||||| | | || | | |||||||||| |||| | | Sbjct: 388 ctcgagggccactaccgcgccgccggcgacgaggctcgcgggctccgcatcctgagctcg 447 Query: 268 caggacgcgggcttcgtgctcctaggccaggagctcgtcgctgcgttgctcgcctgcgcg 327 ||||| || || |||||||||| |||||||||||| ||| ||| |||||||||||||| Sbjct: 448 caggatgccgggctcgtgctcctcagccaggagctcgccgccgcgctgctcgcctgcgcg 507 Query: 328 ctcttctacctgttccccaccgccggccgcggcgaggcccgactcccggccatcaatttt 387 ||||||| ||||||||||||||||| | | |||||| | |||||||| |||||||| Sbjct: 508 ctcttctgcctgttccccaccgccgatagggccgaggcgtgcctcccggcgatcaatttc 567 Query: 388 gatgccttgttctcggcactgactaancatgcgaggcagagccagtagcacaaagtgagg 447 ||| | | || |||||||| | | || ||||||| |||||| |||| || |||||| Sbjct: 568 gatagcctatttgcggcactgtgttataattcgaggcaaagccaggagcagaaggtgagg 627 Query: 448 tgcattgctcactatttcgagagggtgac 476 ||| ||| ||||||||| || |||||||| Sbjct: 628 tgccttgttcactattttgacagggtgac 656
>dbj|AK068101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129K10, full insert sequence Length = 1746 Score = 167 bits (84), Expect = 4e-38 Identities = 313/389 (80%), Gaps = 3/389 (0%) Strand = Plus / Plus Query: 91 cgcgccgtcgagggctacgcgctcttcttcgacgacctcctctcgcggtcccatgcgtgg 150 ||||||| |||||||| |||||||||||||||||||||||| |||||| | || ||| || Sbjct: 268 cgcgccgccgagggcttcgcgctcttcttcgacgacctcctgtcgcgggcgcaggcgcgg 327 Query: 151 gactggttctccgacgtgctcccccgcctcgtgcgcgtcctcctccgcctccccgcgctg 210 ||||||||| | |||| |||| ||||| ||| ||||||||||||||||| ||||| Sbjct: 328 gactggttcgaccacgtcgccccctccctcgcccgcctcctcctccgcctccccacgctg 387 Query: 211 ctcgaggaccactacgccgccgcccgggccgcgac---cgggctccgcctccttgggcct 267 ||||||| ||||||| ||||||| | | || | | |||||||||| |||| | | Sbjct: 388 ctcgagggccactaccgcgccgccggcgacgaggctcgcgggctccgcatcctgagctcg 447 Query: 268 caggacgcgggcttcgtgctcctaggccaggagctcgtcgctgcgttgctcgcctgcgcg 327 ||||| || || |||||||||| |||||||||||| ||| ||| |||||||||||||| Sbjct: 448 caggatgccgggctcgtgctcctcagccaggagctcgccgccgcgctgctcgcctgcgcg 507 Query: 328 ctcttctacctgttccccaccgccggccgcggcgaggcccgactcccggccatcaatttt 387 ||||||| ||||||||||||||||| | | |||||| | |||||||| |||||||| Sbjct: 508 ctcttctgcctgttccccaccgccgatagggccgaggcgtgcctcccggcgatcaatttc 567 Query: 388 gatgccttgttctcggcactgactaancatgcgaggcagagccagtagcacaaagtgagg 447 ||| | | || |||||||| | | || ||||||| |||||| |||| || |||||| Sbjct: 568 gatagcctatttgcggcactgtgttataattcgaggcaaagccaggagcagaaggtgagg 627 Query: 448 tgcattgctcactatttcgagagggtgac 476 ||| ||| ||||||||| || |||||||| Sbjct: 628 tgccttgttcactattttgacagggtgac 656
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 157 bits (79), Expect = 4e-35 Identities = 219/265 (82%), Gaps = 3/265 (1%) Strand = Plus / Minus Query: 91 cgcgccgtcgagggctacgcgctcttcttcgacgacctcctctcgcggtcccatgcgtgg 150 ||||||| |||||||| |||||||||||||||||||||||| |||||| | || ||| || Sbjct: 35169861 cgcgccgccgagggcttcgcgctcttcttcgacgacctcctgtcgcgggcgcaggcgcgg 35169802 Query: 151 gactggttctccgacgtgctcccccgcctcgtgcgcgtcctcctccgcctccccgcgctg 210 ||||||||| | |||| |||| ||||| ||| ||||||||||||||||| ||||| Sbjct: 35169801 gactggttcgaccacgtcgccccctccctcgcccgcctcctcctccgcctccccacgctg 35169742 Query: 211 ctcgaggaccactacgccgccgcccgggccgcgac---cgggctccgcctccttgggcct 267 ||||||| ||||||| ||||||| | | || | | |||||||||| |||| | | Sbjct: 35169741 ctcgagggccactaccgcgccgccggcgacgaggctcgcgggctccgcatcctgagctcg 35169682 Query: 268 caggacgcgggcttcgtgctcctaggccaggagctcgtcgctgcgttgctcgcctgcgcg 327 ||||| || || |||||||||| |||||||||||| ||| ||| |||||||||||||| Sbjct: 35169681 caggatgccgggctcgtgctcctcagccaggagctcgccgccgcgctgctcgcctgcgcg 35169622 Query: 328 ctcttctacctgttccccaccgccg 352 ||||||| ||||||||||||||||| Sbjct: 35169621 ctcttctgcctgttccccaccgccg 35169597 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ggctccgcctccttgggcct 267 |||||||||||||||||||| Sbjct: 6510970 ggctccgcctccttgggcct 6510951
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete sequence Length = 156606 Score = 157 bits (79), Expect = 4e-35 Identities = 219/265 (82%), Gaps = 3/265 (1%) Strand = Plus / Minus Query: 91 cgcgccgtcgagggctacgcgctcttcttcgacgacctcctctcgcggtcccatgcgtgg 150 ||||||| |||||||| |||||||||||||||||||||||| |||||| | || ||| || Sbjct: 48622 cgcgccgccgagggcttcgcgctcttcttcgacgacctcctgtcgcgggcgcaggcgcgg 48563 Query: 151 gactggttctccgacgtgctcccccgcctcgtgcgcgtcctcctccgcctccccgcgctg 210 ||||||||| | |||| |||| ||||| ||| ||||||||||||||||| ||||| Sbjct: 48562 gactggttcgaccacgtcgccccctccctcgcccgcctcctcctccgcctccccacgctg 48503 Query: 211 ctcgaggaccactacgccgccgcccgggccgcgac---cgggctccgcctccttgggcct 267 ||||||| ||||||| ||||||| | | || | | |||||||||| |||| | | Sbjct: 48502 ctcgagggccactaccgcgccgccggcgacgaggctcgcgggctccgcatcctgagctcg 48443 Query: 268 caggacgcgggcttcgtgctcctaggccaggagctcgtcgctgcgttgctcgcctgcgcg 327 ||||| || || |||||||||| |||||||||||| ||| ||| |||||||||||||| Sbjct: 48442 caggatgccgggctcgtgctcctcagccaggagctcgccgccgcgctgctcgcctgcgcg 48383 Query: 328 ctcttctacctgttccccaccgccg 352 ||||||| ||||||||||||||||| Sbjct: 48382 ctcttctgcctgttccccaccgccg 48358
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 157 bits (79), Expect = 4e-35 Identities = 219/265 (82%), Gaps = 3/265 (1%) Strand = Plus / Minus Query: 91 cgcgccgtcgagggctacgcgctcttcttcgacgacctcctctcgcggtcccatgcgtgg 150 ||||||| |||||||| |||||||||||||||||||||||| |||||| | || ||| || Sbjct: 35259933 cgcgccgccgagggcttcgcgctcttcttcgacgacctcctgtcgcgggcgcaggcgcgg 35259874 Query: 151 gactggttctccgacgtgctcccccgcctcgtgcgcgtcctcctccgcctccccgcgctg 210 ||||||||| | |||| |||| ||||| ||| ||||||||||||||||| ||||| Sbjct: 35259873 gactggttcgaccacgtcgccccctccctcgcccgcctcctcctccgcctccccacgctg 35259814 Query: 211 ctcgaggaccactacgccgccgcccgggccgcgac---cgggctccgcctccttgggcct 267 ||||||| ||||||| ||||||| | | || | | |||||||||| |||| | | Sbjct: 35259813 ctcgagggccactaccgcgccgccggcgacgaggctcgcgggctccgcatcctgagctcg 35259754 Query: 268 caggacgcgggcttcgtgctcctaggccaggagctcgtcgctgcgttgctcgcctgcgcg 327 ||||| || || |||||||||| |||||||||||| ||| ||| |||||||||||||| Sbjct: 35259753 caggatgccgggctcgtgctcctcagccaggagctcgccgccgcgctgctcgcctgcgcg 35259694 Query: 328 ctcttctacctgttccccaccgccg 352 ||||||| ||||||||||||||||| Sbjct: 35259693 ctcttctgcctgttccccaccgccg 35259669 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ggctccgcctccttgggcct 267 |||||||||||||||||||| Sbjct: 6510183 ggctccgcctccttgggcct 6510164
>gb|AC004596.2| Homo sapiens chromosome 17, clone CTB-175E5, complete sequence Length = 92000 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 277 ggcttcgtgctcctaggccaggag 300 |||||||||||||||||||||||| Sbjct: 43610 ggcttcgtgctcctaggccaggag 43633
>emb|AL031770.12|HS20B11 Human DNA sequence from clone RP1-20B11 on chromosome 6p25.1-25.3, complete sequence Length = 140385 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 385 tttgatgccttgttctcggcact 407 ||||||||||||||||||||||| Sbjct: 29062 tttgatgccttgttctcggcact 29040
>gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0043I04, complete sequence Length = 145191 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 ctcccggcacgcgccgtcgagg 103 |||||||||||||||||||||| Sbjct: 128365 ctcccggcacgcgccgtcgagg 128386
>gb|AC114533.17| Mus musculus chromosome 1, clone RP24-255G23, complete sequence Length = 147505 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 16 cttccctccccatcccctcccc 37 |||||||||||||||||||||| Sbjct: 21148 cttccctccccatcccctcccc 21169
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 ctcccggcacgcgccgtcgagg 103 |||||||||||||||||||||| Sbjct: 21782345 ctcccggcacgcgccgtcgagg 21782366
>emb|CT009704.12| Mouse DNA sequence from clone RP23-115B21 on chromosome 16, complete sequence Length = 226520 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 tccctccccatcccctccccgc 39 |||||||||||||||||||||| Sbjct: 97642 tccctccccatcccctccccgc 97621
>ref|XM_506317.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_H04.108 mRNA Length = 874 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 tcctcctccgcctccccgcgc 208 ||||||||||||||||||||| Sbjct: 179 tcctcctccgcctccccgcgc 199
>ref|XM_477991.1| Oryza sativa (japonica cultivar-group), mRNA Length = 845 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 tcctcctccgcctccccgcgc 208 ||||||||||||||||||||| Sbjct: 192 tcctcctccgcctccccgcgc 212
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ccgctgcggctcctgccctcc 62 ||||||||||||||||||||| Sbjct: 1985860 ccgctgcggctcctgccctcc 1985840
>gb|AC154025.12| Mus musculus 6 BAC RP24-539J4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 165821 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 13 ccacttccctccccatcccctcccc 37 |||||||||||||| |||||||||| Sbjct: 93720 ccacttccctccccttcccctcccc 93696 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 13 ccacttccctccccatcccctcccc 37 |||||||||||||| |||||||||| Sbjct: 93583 ccacttccctccccttcccctcccc 93559 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 13 ccacttccctccccatcccctcccc 37 |||||||||||||| |||||||||| Sbjct: 93495 ccacttccctccccttcccctcccc 93471
>gb|AC102334.10| Mus musculus chromosome 15, clone RP24-544N15, complete sequence Length = 162721 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 ttccctccccatcccctcccc 37 ||||||||||||||||||||| Sbjct: 114036 ttccctccccatcccctcccc 114016
>gb|AY363618.1| Malus baccata putative TIR-NBS type R protein 4 (R4) gene, complete cds Length = 3366 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 cgtcctcctccgcctccccgc 206 ||||||||||||||||||||| Sbjct: 841 cgtcctcctccgcctccccgc 861
>emb|AL353146.9| Human DNA sequence from clone RP11-168O10 on chromosome 10 Contains the IFIT1 gene for interferon-induced protein with tetratricopeptide repeats 1, the 5' end of a variant of the LIPA gene for lipase A lysosomal acid cholesterol esterase (Wolman disease), the gene for retinoic acid- and interferon-inducible protein (58kD) (RI58), a novel gene, the gene for a novel protein similar to monocarboxylate, the 3' end of a novel gene and a CpG island, complete sequence Length = 126887 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 ccctccccatcccctccccgc 39 ||||||||||||||||||||| Sbjct: 36240 ccctccccatcccctccccgc 36220
>emb|X56928.1|ATTECR A.teichomyceticus tecR gene, ORF's 1 & 2 Length = 2614 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 actacgccgccgcccgggccg 241 ||||||||||||||||||||| Sbjct: 996 actacgccgccgcccgggccg 976
>emb|AJ010302.1|RSP010302 Rhodobacter sphaeroides photosynthetic gene cluster Length = 40707 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 ccgctgcggctcctgccctcc 62 ||||||||||||||||||||| Sbjct: 35274 ccgctgcggctcctgccctcc 35294
>gb|AC011490.7| Homo sapiens chromosome 19 clone CTB-179L3, complete sequence Length = 115289 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 16 cttccctccccatcccctccccgca 40 ||||||||||| ||||||||||||| Sbjct: 16649 cttccctccccctcccctccccgca 16673
>gb|AF195122.1| Rhodobacter sphaeroides photosynthetic gene cluster, partial sequence Length = 66280 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 ccgctgcggctcctgccctcc 62 ||||||||||||||||||||| Sbjct: 60396 ccgctgcggctcctgccctcc 60416
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 tcctcctccgcctccccgcgc 208 ||||||||||||||||||||| Sbjct: 16211354 tcctcctccgcctccccgcgc 16211374
>emb|AL805898.11| Mouse DNA sequence from clone RP23-432F24 on chromosome 4, complete sequence Length = 215828 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ccacttccctccccatcccct 33 ||||||||||||||||||||| Sbjct: 210988 ccacttccctccccatcccct 211008
>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_H04 Length = 151699 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 tcctcctccgcctccccgcgc 208 ||||||||||||||||||||| Sbjct: 31792 tcctcctccgcctccccgcgc 31812
>dbj|AK104968.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-E04, full insert sequence Length = 874 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 tcctcctccgcctccccgcgc 208 ||||||||||||||||||||| Sbjct: 179 tcctcctccgcctccccgcgc 199
>dbj|AK073834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068J20, full insert sequence Length = 844 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 tcctcctccgcctccccgcgc 208 ||||||||||||||||||||| Sbjct: 191 tcctcctccgcctccccgcgc 211
>emb|AL807748.10| Mouse DNA sequence from clone RP23-170A3 on chromosome 4, complete sequence Length = 170162 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 cacttccctccccatcccctc 34 ||||||||||||||||||||| Sbjct: 30196 cacttccctccccatcccctc 30176
>gb|AC168117.2| Mus musculus BAC clone RP23-461G13 from chromosome 17, complete sequence Length = 169205 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 acttccctccccatcccctc 34 |||||||||||||||||||| Sbjct: 106471 acttccctccccatcccctc 106490
>gb|AC152826.2| Mus musculus BAC clone RP23-111C21 from chromosome 8, complete sequence Length = 196497 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 gctccgcctccttgggcctcagga 272 |||||||||||||||||| ||||| Sbjct: 147496 gctccgcctccttgggccacagga 147519
>ref|XM_423730.1| PREDICTED: Gallus gallus similar to Olfactory receptor 5BF1 (LOC426052), partial mRNA Length = 880 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 gaggtgcattgctcactatt 463 |||||||||||||||||||| Sbjct: 113 gaggtgcattgctcactatt 132
>ref|XM_362721.1| Magnaporthe grisea 70-15 predicted protein (MG08327.4) partial mRNA Length = 543 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 ggcagagccagtagcacaaa 441 |||||||||||||||||||| Sbjct: 450 ggcagagccagtagcacaaa 431
>ref|XM_654596.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2084.2), mRNA Length = 3243 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 aggccaggagctcgtcgctg 310 |||||||||||||||||||| Sbjct: 1159 aggccaggagctcgtcgctg 1140
>gb|AC093799.2| Homo sapiens BAC clone RP11-307C18 from 7, complete sequence Length = 156195 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tccctccccatcccctcccc 37 |||||||||||||||||||| Sbjct: 88359 tccctccccatcccctcccc 88340
>gb|AC105429.3| Homo sapiens chromosome 16 clone RP11-106D4, complete sequence Length = 160582 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 ctcctgccctccccgcaccctcct 74 |||| ||||||||||||||||||| Sbjct: 129397 ctcccgccctccccgcaccctcct 129420
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome Length = 138390 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 caccgccggccgcggcgaggcccg 368 ||||||||||| |||||||||||| Sbjct: 76823 caccgccggccccggcgaggcccg 76800
>ref|XM_850967.1| PREDICTED: Canis familiaris similar to CG4452-PA, isoform A, transcript variant 6 (LOC485117), mRNA Length = 1240 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cgccgccgcccgggccgcga 244 |||||||||||||||||||| Sbjct: 202 cgccgccgcccgggccgcga 183
>ref|XM_542235.2| PREDICTED: Canis familiaris similar to CG4452-PA, isoform A, transcript variant 1 (LOC485117), mRNA Length = 1046 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cgccgccgcccgggccgcga 244 |||||||||||||||||||| Sbjct: 202 cgccgccgcccgggccgcga 183
>ref|XM_850892.1| PREDICTED: Canis familiaris similar to CG4452-PA, isoform A, transcript variant 5 (LOC485117), mRNA Length = 1619 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cgccgccgcccgggccgcga 244 |||||||||||||||||||| Sbjct: 202 cgccgccgcccgggccgcga 183
>ref|XM_843233.1| PREDICTED: Canis familiaris similar to CG4452-PA, isoform A, transcript variant 2 (LOC485117), mRNA Length = 2067 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cgccgccgcccgggccgcga 244 |||||||||||||||||||| Sbjct: 202 cgccgccgcccgggccgcga 183
>gb|AC131114.3| Mus musculus BAC clone RP24-212G16 from chromosome 19, complete sequence Length = 160122 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 49 ggctcctgccctccccgcaccctcctcc 76 |||||| |||||||| |||||||||||| Sbjct: 116015 ggctccagccctccctgcaccctcctcc 115988
>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0081P02, complete sequence Length = 162425 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ggctccgcctccttgggcct 267 |||||||||||||||||||| Sbjct: 53732 ggctccgcctccttgggcct 53713
>gb|AY363616.1| Malus baccata putative TIR-NBS type R protein 4 (R4) mRNA, complete cds Length = 2243 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 cgtcctcctccgcctccccg 205 |||||||||||||||||||| Sbjct: 367 cgtcctcctccgcctccccg 386
>gb|AC119250.9| Mus musculus chromosome 18, clone RP24-274F16, complete sequence Length = 124705 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tccctccccatcccctcccc 37 |||||||||||||||||||| Sbjct: 109788 tccctccccatcccctcccc 109769
>emb|Z97192.2|HS29C18 Human DNA sequence from clone RP1-29C18 on chromosome 22, complete sequence Length = 143701 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 cctgttccccaccgccggcc 355 |||||||||||||||||||| Sbjct: 33385 cctgttccccaccgccggcc 33404
>emb|Y17794.1|GGY17794 Gallus gallus mRNA for transcription factor cFKH-1 Length = 1970 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 169 ctcccccgcctcgtgcgcgtcctcctccgcctcccc 204 ||||||| |||| | ||| ||||||||||||||||| Sbjct: 761 ctccccctcctcctccgcctcctcctccgcctcccc 796
>gb|AC166172.1| Mus musculus BAC clone RP23-106N22 from chromosome 17, complete sequence Length = 213656 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tccctccccatcccctcccc 37 |||||||||||||||||||| Sbjct: 181172 tccctccccatcccctcccc 181191
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 gccgccgcccgggccgcgac 245 |||||||||||||||||||| Sbjct: 138298 gccgccgcccgggccgcgac 138317
>emb|AJ271405.1|SRO271405 Streptomyces rochei sttO gene, sttN gene, sttM gene, sttL gene, sttK gene, sttJ gene, sttI gene, sttH gene, sttG gene, sttF gene and sttE gene, strain F20 Length = 13339 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgccgcccgggccgcga 244 |||||||||||||||||||| Sbjct: 2785 cgccgccgcccgggccgcga 2804
>gb|AC104024.8| Homo sapiens chromosome 17, clone RP11-416I2, complete sequence Length = 97645 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 ctccccatcccctccccgca 40 |||||||||||||||||||| Sbjct: 19109 ctccccatcccctccccgca 19128
>gb|AC079111.7| Homo sapiens chromosome 17, clone RP11-367G9, complete sequence Length = 163410 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 ctccccatcccctccccgca 40 |||||||||||||||||||| Sbjct: 14303 ctccccatcccctccccgca 14284
>dbj|AK056794.1| Homo sapiens cDNA FLJ32232 fis, clone PLACE6004578, highly similar to CYTOCHROME P450 11A1, MITOCHONDRIAL PRECURSOR (EC 1.14.15.6) Length = 2000 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 acgccgccgcccgggccgcg 243 |||||||||||||||||||| Sbjct: 28 acgccgccgcccgggccgcg 47
>dbj|AK134512.1| Mus musculus 11 days embryo head cDNA, RIKEN full-length enriched library, clone:6230427N15 product:transmembrane 7 superfamily member 2, full insert sequence Length = 3082 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 49 ggctcctgccctccccgcaccctcctcc 76 |||||| |||||||| |||||||||||| Sbjct: 760 ggctccagccctccctgcaccctcctcc 733
>emb|BX936349.5| Mouse DNA sequence from clone RP23-416N9 on chromosome X, complete sequence Length = 96071 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 acttccctccccatcccctc 34 |||||||||||||||||||| Sbjct: 10546 acttccctccccatcccctc 10527
>emb|BX927321.6| Mouse DNA sequence from clone RP23-144M4 on chromosome X, complete sequence Length = 233474 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 acttccctccccatcccctc 34 |||||||||||||||||||| Sbjct: 117412 acttccctccccatcccctc 117393
>gb|AC136636.6| Mus musculus BAC clone RP24-183E22 from chromosome 1, complete sequence Length = 182542 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 acttccctccccatcccctc 34 |||||||||||||||||||| Sbjct: 88973 acttccctccccatcccctc 88992
>gb|AC154652.2| Mus musculus BAC clone RP24-261L18 from chromosome 17, complete sequence Length = 166922 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tccctccccatcccctcccc 37 |||||||||||||||||||| Sbjct: 153892 tccctccccatcccctcccc 153873
>emb|BX936287.9| Mouse DNA sequence from clone RP23-221M16 on chromosome X, complete sequence Length = 184662 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 acttccctccccatcccctc 34 |||||||||||||||||||| Sbjct: 26066 acttccctccccatcccctc 26047
>emb|BX936348.7| Mouse DNA sequence from clone RP23-348D19 on chromosome X, complete sequence Length = 62362 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 acttccctccccatcccctc 34 |||||||||||||||||||| Sbjct: 58253 acttccctccccatcccctc 58234
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tccctccccatcccctcccc 37 |||||||||||||||||||| Sbjct: 4718031 tccctccccatcccctcccc 4718050
>gb|AC010531.8| Homo sapiens chromosome 16 clone RP11-178L8, complete sequence Length = 175051 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 ctcctgccctccccgcaccctcct 74 |||| ||||||||||||||||||| Sbjct: 104940 ctcccgccctccccgcaccctcct 104917
>gb|AC016737.8| Homo sapiens BAC clone RP11-394I13 from 2, complete sequence Length = 196085 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 tcctcctccgcctccccgcgctgc 211 ||||||||| |||||||||||||| Sbjct: 29072 tcctcctcctcctccccgcgctgc 29095
>ref|NM_205006.1| Gallus gallus winged-helix transcription factor (CFKH-1), mRNA Length = 1970 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 169 ctcccccgcctcgtgcgcgtcctcctccgcctcccc 204 ||||||| |||| | ||| ||||||||||||||||| Sbjct: 761 ctccccctcctcctccgcctcctcctccgcctcccc 796
>gb|AC090826.15| Homo sapiens chromosome 15, clone CTD-2311M21, complete sequence Length = 169518 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 acgccgccgcccgggccgcg 243 |||||||||||||||||||| Sbjct: 103409 acgccgccgcccgggccgcg 103390
>gb|AC129959.6| Bos taurus, clone RP42-518P7, complete sequence Length = 211988 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 ccacttccctccccatcccctccc 36 ||||||||||||||||||| |||| Sbjct: 3808 ccacttccctccccatcccatccc 3831
>ref|XM_226408.3| PREDICTED: Rattus norvegicus similar to RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein (LOC307797), mRNA Length = 2805 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 gctccgcctccttgggcctcagga 272 |||||||||||||||||| ||||| Sbjct: 79 gctccgcctccttgggccacagga 56
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 cgccggccgcggcgaggccc 367 |||||||||||||||||||| Sbjct: 4231145 cgccggccgcggcgaggccc 4231126 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 ccgcctccccgcgctgctcgagga 218 ||||||||| |||||||||||||| Sbjct: 2679284 ccgcctcccggcgctgctcgagga 2679307
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 gatcgccgccgccacttccc 21 |||||||||||||||||||| Sbjct: 2249638 gatcgccgccgccacttccc 2249657
>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1572_F02 Length = 93626 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tccctccccatcccctcccc 37 |||||||||||||||||||| Sbjct: 90103 tccctccccatcccctcccc 90122
>dbj|AB076982.1| Avena sativa AsHHT3 mRNA for hydroxyanthranilate hydroxycinnamoyltransferase 3, complete cds Length = 1659 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ccgcaccctcctccgggccc 82 |||||||||||||||||||| Sbjct: 570 ccgcaccctcctccgggccc 589
>dbj|AB076981.1| Avena sativa AsHHT2 mRNA for hydroxyanthranilate hydroxycinnamoyltransferase 2, complete cds Length = 1770 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ccgcaccctcctccgggccc 82 |||||||||||||||||||| Sbjct: 717 ccgcaccctcctccgggccc 736
>gb|AC004841.2|AC004841 Homo sapiens PAC clone RP4-607J23 from 7q21.2-q31.1, complete sequence Length = 132072 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tccctccccatcccctcccc 37 |||||||||||||||||||| Sbjct: 99505 tccctccccatcccctcccc 99486
>gb|AC117767.13| Mus musculus chromosome 1, clone RP24-507O16, complete sequence Length = 192892 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 cacttccctccccatcccctcccc 37 ||||||||||||| |||||||||| Sbjct: 84685 cacttccctccccctcccctcccc 84708
>gb|AC140933.1| Gallus gallus BAC clone TAM31-60P10 from chromosome ul, complete sequence Length = 119242 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ttccctccccatcccctccc 36 |||||||||||||||||||| Sbjct: 97064 ttccctccccatcccctccc 97045
>emb|CR954969.10| Mouse DNA sequence from clone RP23-332J14 on chromosome X, complete sequence Length = 204157 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 acttccctccccatcccctc 34 |||||||||||||||||||| Sbjct: 12053 acttccctccccatcccctc 12072
>gb|AC131692.5| Mus musculus BAC clone RP23-391B20 from 19, complete sequence Length = 236246 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 49 ggctcctgccctccccgcaccctcctcc 76 |||||| |||||||| |||||||||||| Sbjct: 86766 ggctccagccctccctgcaccctcctcc 86739
>emb|AL611985.22| Mouse DNA sequence from clone RP23-421E12 on chromosome 4, complete sequence Length = 219205 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tccctccccatcccctcccc 37 |||||||||||||||||||| Sbjct: 138318 tccctccccatcccctcccc 138299
>emb|AL672050.7| Mouse DNA sequence from clone RP23-315F2 on chromosome X, complete sequence Length = 174151 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 acttccctccccatcccctc 34 |||||||||||||||||||| Sbjct: 74587 acttccctccccatcccctc 74568
>gb|AF494280.1| Homo sapiens GC-binding transcription factor Sp3 gene, partial cds Length = 9596 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 tcctcctccgcctccccgcgctgc 211 ||||||||| |||||||||||||| Sbjct: 927 tcctcctcctcctccccgcgctgc 904
>emb|AL731846.3| Sminthopsis DNA sequence from clone XX-38L18, complete sequence Length = 48504 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 cttccctccccatcccctcc 35 |||||||||||||||||||| Sbjct: 4776 cttccctccccatcccctcc 4795 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,842,561 Number of Sequences: 3902068 Number of extensions: 3842561 Number of successful extensions: 95851 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94593 Number of HSP's gapped (non-prelim): 1256 length of query: 498 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 476 effective length of database: 17,147,199,772 effective search space: 8162067091472 effective search space used: 8162067091472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
