ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast64a04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470036.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1474 Score = 420 bits (212), Expect = e-114 Identities = 278/300 (92%) Strand = Plus / Plus Query: 203 gctgaaggcctgctgatgaacggcaacttcgagacggcgccgaggaaggtgaacaagacc 262 ||||||||||| || || || |||||||||||||||||||||||||||||||||||||| Sbjct: 236 gctgaaggcctcctcatcaatggcaacttcgagacggcgccgaggaaggtgaacaagaca 295 Query: 263 ctcatcgtgggccggcactcgctgccggggtggacgctgcggggccacgtcgagtacgtc 322 |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 296 ctcatcgtcggccgccactcgctgccggggtggacgctgcgggggcacgtcgagtacgtc 355 Query: 323 tccgccgggccgcagcccggcggcatgttcttcgccgtgccgcacggcgtgcacgcgctc 382 |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 356 tccggcgggccgcagcccggcggcatgttcttcgcggtgccgcacggcgtgcacgctctc 415 Query: 383 cgcctcggcagccacgcgtcggcgtcgcagaacgtgtccgtgcgccccggctcgctctac 442 ||||| ||| ||| |||||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 416 cgcctgggcggccgcgcgtcggcgtcccagaacgtgtccgtgcgccccggcgcgctctac 475 Query: 443 gcgctcaccttcgccgccacccgcacctgcgcgcaggacgaggccctgcgcatcgccgtc 502 |||||||||||||||||||| ||||| ||||| ||||||||||| || ||| |||||||| Sbjct: 476 gcgctcaccttcgccgccacgcgcacgtgcgcccaggacgaggcgctccgcgtcgccgtc 535
>dbj|AK059286.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D10, full insert sequence Length = 1396 Score = 420 bits (212), Expect = e-114 Identities = 278/300 (92%) Strand = Plus / Plus Query: 203 gctgaaggcctgctgatgaacggcaacttcgagacggcgccgaggaaggtgaacaagacc 262 ||||||||||| || || || |||||||||||||||||||||||||||||||||||||| Sbjct: 235 gctgaaggcctcctcatcaatggcaacttcgagacggcgccgaggaaggtgaacaagaca 294 Query: 263 ctcatcgtgggccggcactcgctgccggggtggacgctgcggggccacgtcgagtacgtc 322 |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 295 ctcatcgtcggccgccactcgctgccggggtggacgctgcgggggcacgtcgagtacgtc 354 Query: 323 tccgccgggccgcagcccggcggcatgttcttcgccgtgccgcacggcgtgcacgcgctc 382 |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 355 tccggcgggccgcagcccggcggcatgttcttcgcggtgccgcacggcgtgcacgctctc 414 Query: 383 cgcctcggcagccacgcgtcggcgtcgcagaacgtgtccgtgcgccccggctcgctctac 442 ||||| ||| ||| |||||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 415 cgcctgggcggccgcgcgtcggcgtcccagaacgtgtccgtgcgccccggcgcgctctac 474 Query: 443 gcgctcaccttcgccgccacccgcacctgcgcgcaggacgaggccctgcgcatcgccgtc 502 |||||||||||||||||||| ||||| ||||| ||||||||||| || ||| |||||||| Sbjct: 475 gcgctcaccttcgccgccacgcgcacgtgcgcccaggacgaggcgctccgcgtcgccgtc 534
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 410 bits (207), Expect = e-111 Identities = 261/279 (93%) Strand = Plus / Plus Query: 224 ggcaacttcgagacggcgccgaggaaggtgaacaagaccctcatcgtgggccggcactcg 283 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 33462563 ggcaacttcgagacggcgccgaggaaggtgaacaagacactcatcgtcggccgccactcg 33462622 Query: 284 ctgccggggtggacgctgcggggccacgtcgagtacgtctccgccgggccgcagcccggc 343 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 33462623 ctgccggggtggacgctgcgggggcacgtcgagtacgtctccggcgggccgcagcccggc 33462682 Query: 344 ggcatgttcttcgccgtgccgcacggcgtgcacgcgctccgcctcggcagccacgcgtcg 403 |||||||||||||| |||||||||||||||||||| |||||||| ||| ||| ||||||| Sbjct: 33462683 ggcatgttcttcgcggtgccgcacggcgtgcacgctctccgcctgggcggccgcgcgtcg 33462742 Query: 404 gcgtcgcagaacgtgtccgtgcgccccggctcgctctacgcgctcaccttcgccgccacc 463 ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 33462743 gcgtcccagaacgtgtccgtgcgccccggcgcgctctacgcgctcaccttcgccgccacg 33462802 Query: 464 cgcacctgcgcgcaggacgaggccctgcgcatcgccgtc 502 ||||| ||||| ||||||||||| || ||| |||||||| Sbjct: 33462803 cgcacgtgcgcccaggacgaggcgctccgcgtcgccgtc 33462841
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 410 bits (207), Expect = e-111 Identities = 261/279 (93%) Strand = Plus / Minus Query: 224 ggcaacttcgagacggcgccgaggaaggtgaacaagaccctcatcgtgggccggcactcg 283 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 35548 ggcaacttcgagacggcgccgaggaaggtgaacaagacactcatcgtcggccgccactcg 35489 Query: 284 ctgccggggtggacgctgcggggccacgtcgagtacgtctccgccgggccgcagcccggc 343 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 35488 ctgccggggtggacgctgcgggggcacgtcgagtacgtctccggcgggccgcagcccggc 35429 Query: 344 ggcatgttcttcgccgtgccgcacggcgtgcacgcgctccgcctcggcagccacgcgtcg 403 |||||||||||||| |||||||||||||||||||| |||||||| ||| ||| ||||||| Sbjct: 35428 ggcatgttcttcgcggtgccgcacggcgtgcacgctctccgcctgggcggccgcgcgtcg 35369 Query: 404 gcgtcgcagaacgtgtccgtgcgccccggctcgctctacgcgctcaccttcgccgccacc 463 ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 35368 gcgtcccagaacgtgtccgtgcgccccggcgcgctctacgcgctcaccttcgccgccacg 35309 Query: 464 cgcacctgcgcgcaggacgaggccctgcgcatcgccgtc 502 ||||| ||||| ||||||||||| || ||| |||||||| Sbjct: 35308 cgcacgtgcgcccaggacgaggcgctccgcgtcgccgtc 35270
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 410 bits (207), Expect = e-111 Identities = 261/279 (93%) Strand = Plus / Plus Query: 224 ggcaacttcgagacggcgccgaggaaggtgaacaagaccctcatcgtgggccggcactcg 283 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 33553073 ggcaacttcgagacggcgccgaggaaggtgaacaagacactcatcgtcggccgccactcg 33553132 Query: 284 ctgccggggtggacgctgcggggccacgtcgagtacgtctccgccgggccgcagcccggc 343 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 33553133 ctgccggggtggacgctgcgggggcacgtcgagtacgtctccggcgggccgcagcccggc 33553192 Query: 344 ggcatgttcttcgccgtgccgcacggcgtgcacgcgctccgcctcggcagccacgcgtcg 403 |||||||||||||| |||||||||||||||||||| |||||||| ||| ||| ||||||| Sbjct: 33553193 ggcatgttcttcgcggtgccgcacggcgtgcacgctctccgcctgggcggccgcgcgtcg 33553252 Query: 404 gcgtcgcagaacgtgtccgtgcgccccggctcgctctacgcgctcaccttcgccgccacc 463 ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 33553253 gcgtcccagaacgtgtccgtgcgccccggcgcgctctacgcgctcaccttcgccgccacg 33553312 Query: 464 cgcacctgcgcgcaggacgaggccctgcgcatcgccgtc 502 ||||| ||||| ||||||||||| || ||| |||||||| Sbjct: 33553313 cgcacgtgcgcccaggacgaggcgctccgcgtcgccgtc 33553351
>dbj|AK121037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050P15, full insert sequence Length = 1182 Score = 410 bits (207), Expect = e-111 Identities = 261/279 (93%) Strand = Plus / Plus Query: 224 ggcaacttcgagacggcgccgaggaaggtgaacaagaccctcatcgtgggccggcactcg 283 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 42 ggcaacttcgagacggcgccgaggaaggtgaacaagacactcatcgtcggccgccactcg 101 Query: 284 ctgccggggtggacgctgcggggccacgtcgagtacgtctccgccgggccgcagcccggc 343 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 102 ctgccggggtggacgctgcgggggcacgtcgagtacgtctccggcgggccgcagcccggc 161 Query: 344 ggcatgttcttcgccgtgccgcacggcgtgcacgcgctccgcctcggcagccacgcgtcg 403 |||||||||||||| |||||||||||||||||||| |||||||| ||| ||| ||||||| Sbjct: 162 ggcatgttcttcgcggtgccgcacggcgtgcacgctctccgcctgggcggccgcgcgtcg 221 Query: 404 gcgtcgcagaacgtgtccgtgcgccccggctcgctctacgcgctcaccttcgccgccacc 463 ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 222 gcgtcccagaacgtgtccgtgcgccccggcgcgctctacgcgctcaccttcgccgccacg 281 Query: 464 cgcacctgcgcgcaggacgaggccctgcgcatcgccgtc 502 ||||| ||||| ||||||||||| || ||| |||||||| Sbjct: 282 cgcacgtgcgcccaggacgaggcgctccgcgtcgccgtc 320
>gb|AY596618.1| Saccharum officinarum clone SCCCCL4009G04, complete sequence Length = 811 Score = 373 bits (188), Expect = e-100 Identities = 272/300 (90%) Strand = Plus / Plus Query: 194 gctcaggacgctgaaggcctgctgatgaacggcaacttcgagacggcgccgaggaaggtg 253 ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| || Sbjct: 183 gctcaagacgctgaaggcctgctcatcaacggcaacttcgagacggcgccgaggaagctg 242 Query: 254 aacaagaccctcatcgtgggccggcactcgctgccggggtggacgctgcggggccacgtc 313 ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||| Sbjct: 243 aacaagaccctcatcgtgggccggcactcgctgcctgggtggacggtgcaggggcacgtg 302 Query: 314 gagtacgtctccgccgggccgcagcccggcggcatgttcttcgccgtgccgcacggcgtg 373 ||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 303 gagtacgtctcgggcgggccgcagcccgggggcatgttcttcgcggtgccgcacggcgtg 362 Query: 374 cacgcgctccgcctcggcagccacgcgtcggcgtcgcagaacgtgtccgtgcgccccggc 433 |||||||||||||||||||||| |||||||||||||||||||||| | ||||| || ||| Sbjct: 363 cacgcgctccgcctcggcagccgcgcgtcggcgtcgcagaacgtgacggtgcggccgggc 422 Query: 434 tcgctctacgcgctcaccttcgccgccacccgcacctgcgcgcaggacgaggccctgcgc 493 |||| |||||||| || ||||| || || || || ||||||||||||||| |||||||| Sbjct: 423 gcgctgtacgcgctgacgttcgcggcgacgcggacgtgcgcgcaggacgagtccctgcgc 482
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 133 bits (67), Expect = 6e-28 Identities = 168/199 (84%), Gaps = 2/199 (1%) Strand = Plus / Plus Query: 279 actcgctgccggggtggacgctgcggggccacgtcgagtacgtctccgccgggccgcagc 338 ||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||||||||| Sbjct: 5802236 actcgctgccggggtgggcgctgcgcggccgcgtcgagtacgtctccggcgggccgcagc 5802295 Query: 339 ccggcggcatgttcttcgccgtgccgcacggcgtgcacgcgctccgcctcggcagc-cac 397 ||||||| |||| |||||||| ||| |||| |||||||||||||| || ||| | | Sbjct: 5802296 ccggcgggatgtacttcgccgccgcgccgggcgcccacgcgctccgcct-gggagcgcgc 5802354 Query: 398 gcgtcggcgtcgcagaacgtgtccgtgcgccccggctcgctctacgcgctcaccttcgcc 457 ||||||||| ||||| ||| | |||||||||||| || ||||||||||| ||||| Sbjct: 5802355 gcgtcggcggcgcaggcggtggcggtgcgccccggcgcggcgtacgcgctcacgttcgcg 5802414 Query: 458 gccacccgcacctgcgcgc 476 ||||| ||| ||||||||| Sbjct: 5802415 gccacgcgcgcctgcgcgc 5802433
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1119_B04 Length = 151721 Score = 133 bits (67), Expect = 6e-28 Identities = 168/199 (84%), Gaps = 2/199 (1%) Strand = Plus / Plus Query: 279 actcgctgccggggtggacgctgcggggccacgtcgagtacgtctccgccgggccgcagc 338 ||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||||||||| Sbjct: 109264 actcgctgccggggtgggcgctgcgcggccgcgtcgagtacgtctccggcgggccgcagc 109323 Query: 339 ccggcggcatgttcttcgccgtgccgcacggcgtgcacgcgctccgcctcggcagc-cac 397 ||||||| |||| |||||||| ||| |||| |||||||||||||| || ||| | | Sbjct: 109324 ccggcgggatgtacttcgccgccgcgccgggcgcccacgcgctccgcct-gggagcgcgc 109382 Query: 398 gcgtcggcgtcgcagaacgtgtccgtgcgccccggctcgctctacgcgctcaccttcgcc 457 ||||||||| ||||| ||| | |||||||||||| || ||||||||||| ||||| Sbjct: 109383 gcgtcggcggcgcaggcggtggcggtgcgccccggcgcggcgtacgcgctcacgttcgcg 109442 Query: 458 gccacccgcacctgcgcgc 476 ||||| ||| ||||||||| Sbjct: 109443 gccacgcgcgcctgcgcgc 109461
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 97 ctccgcctcctccgccgtcgcc 118 |||||||||||||||||||||| Sbjct: 26599293 ctccgcctcctccgccgtcgcc 26599314
>dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0460H04 Length = 166490 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 97 ctccgcctcctccgccgtcgcc 118 |||||||||||||||||||||| Sbjct: 132946 ctccgcctcctccgccgtcgcc 132967
>dbj|AP004803.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0677B10 Length = 134423 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 97 ctccgcctcctccgccgtcgcc 118 |||||||||||||||||||||| Sbjct: 15723 ctccgcctcctccgccgtcgcc 15744
>gb|U46602.1|ZMU46602 Zea mays USDA Ames 15820 ITS1, 5.8S ribosomal RNA, ITS2 Length = 599 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 326 gccgggccgcagcccggcggca 347 |||||||||||||||||||||| Sbjct: 63 gccgggccgcagcccggcggca 42
>ref|XM_480945.1| Oryza sativa (japonica cultivar-group), mRNA Length = 378 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 94 cgtctccgcctcctccgccgtcgcc 118 |||||||||||||||||||| |||| Sbjct: 253 cgtctccgcctcctccgccgccgcc 229
>gb|AC146913.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0013C12 map near S6115, complete sequence Length = 123718 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 94 cgtctccgcctcctccgccgtcgcc 118 |||||||||||||||||||| |||| Sbjct: 68793 cgtctccgcctcctccgccgccgcc 68769
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 cgtctccgcctcctccgccgtcgcc 118 |||||||||||||||||||| |||| Sbjct: 18861924 cgtctccgcctcctccgccgccgcc 18861948 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ccgcctcctccgccgtcgcc 118 |||||||||||||||||||| Sbjct: 18917046 ccgcctcctccgccgtcgcc 18917027
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 94 cgtctccgcctcctccgccgtcgcc 118 |||||||||||||||||||| |||| Sbjct: 12901457 cgtctccgcctcctccgccgccgcc 12901433
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 cgtctccgcctcctccgccgtcgcc 118 |||||||||||||||||||| |||| Sbjct: 8820820 cgtctccgcctcctccgccgccgcc 8820844
>dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0437G01 Length = 147101 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 cgtctccgcctcctccgccgtcgcc 118 |||||||||||||||||||| |||| Sbjct: 98569 cgtctccgcctcctccgccgccgcc 98593
>dbj|AP003859.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1033_B09 Length = 120648 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 cgtctccgcctcctccgccgtcgcc 118 |||||||||||||||||||| |||| Sbjct: 4463 cgtctccgcctcctccgccgccgcc 4487
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 ctacgcgctcaccttcgccgc 459 ||||||||||||||||||||| Sbjct: 1625858 ctacgcgctcaccttcgccgc 1625878
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 439 ctacgcgctcaccttcgccgccacc 463 |||||||| |||||||||||||||| Sbjct: 738915 ctacgcgcgcaccttcgccgccacc 738939
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 94 cgtctccgcctcctccgccgtcgcc 118 |||||||||||||||||||| |||| Sbjct: 12981664 cgtctccgcctcctccgccgccgcc 12981640
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 cgtctccgcctcctccgccgtcgcc 118 |||||||||||||||||||| |||| Sbjct: 18788151 cgtctccgcctcctccgccgccgcc 18788175 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ccgcctcctccgccgtcgcc 118 |||||||||||||||||||| Sbjct: 18843273 ccgcctcctccgccgtcgcc 18843254
>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153064 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 94 cgtctccgcctcctccgccgtcgcc 118 |||||||||||||||||||| |||| Sbjct: 108455 cgtctccgcctcctccgccgccgcc 108431 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ccgcctcctccgccgtcgcc 118 |||||||||||||||||||| Sbjct: 53333 ccgcctcctccgccgtcgcc 53352
>emb|AL670720.7| Mouse DNA sequence from clone RP23-321M9 on chromosome 4, complete sequence Length = 200628 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 ctgcgtcgccaagctcgcttg 50 ||||||||||||||||||||| Sbjct: 37924 ctgcgtcgccaagctcgcttg 37944
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 342 gcggcatgttcttcgccgtgccgc 365 ||||||||||||||||| |||||| Sbjct: 194098 gcggcatgttcttcgccttgccgc 194075
>ref|XM_476187.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1869 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ctccgccgtcgccacgctcg 125 |||||||||||||||||||| Sbjct: 1641 ctccgccgtcgccacgctcg 1660
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 472 cgcgcaggacgaggccctgcgcat 495 |||||||||||||| ||||||||| Sbjct: 1792842 cgcgcaggacgagggcctgcgcat 1792865
>gb|AY492272.1| Corynebacterium variabile strain CIP 102112 RpoB (rpoB) gene, partial cds Length = 3343 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 cgtcgagtacgtctccgccg 329 |||||||||||||||||||| Sbjct: 1883 cgtcgagtacgtctccgccg 1902
>ref|XM_954917.1| Neurospora crassa OR74A hypothetical protein (NCU06148.1) partial mRNA Length = 2316 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cctcctccgccgtcgccacg 121 |||||||||||||||||||| Sbjct: 2053 cctcctccgccgtcgccacg 2034
>ref|XM_326002.1| Neurospora crassa OR74A hypothetical protein (NCU06148.1) partial mRNA Length = 2316 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cctcctccgccgtcgccacg 121 |||||||||||||||||||| Sbjct: 2053 cctcctccgccgtcgccacg 2034
>gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1003C08, complete sequence Length = 152527 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ctccgccgtcgccacgctcg 125 |||||||||||||||||||| Sbjct: 17010 ctccgccgtcgccacgctcg 16991
>gb|L46798.1|LEIGP63E Leishmania amazonensis ecto-metalloproteinase precursor (gp63) gene, complete cds Length = 2046 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 ggccctgcgcatcgccgtct 503 |||||||||||||||||||| Sbjct: 459 ggccctgcgcatcgccgtct 478
>gb|BC059215.1| Mus musculus transcriptional regulating factor 1, mRNA (cDNA clone MGC:66566 IMAGE:6412734), complete cds Length = 4555 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ctccgcctcctccgccgtcgccac 120 ||||||||||||||||| |||||| Sbjct: 2342 ctccgcctcctccgccgccgccac 2365
>gb|AC112683.10| Mus musculus chromosome 17, clone RP23-332P1, complete sequence Length = 206979 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ctccgcctcctccgccgtcgccac 120 ||||||||||||||||| |||||| Sbjct: 102762 ctccgcctcctccgccgccgccac 102785
>emb|Z82186.1|HS49D8 Human DNA sequence from clone CITF22-49D8 on chromosome 22, complete sequence Length = 35860 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 cgtctccgcctcctccgccg 113 |||||||||||||||||||| Sbjct: 23283 cgtctccgcctcctccgccg 23264
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cgccgtcgccacgctcgccg 128 |||||||||||||||||||| Sbjct: 1565589 cgccgtcgccacgctcgccg 1565608
>dbj|AB244732.1| Pseudomonas sp. MIS38 genes for putative RNA polymerase sigma-70 factor, putative pyoverdine chromophore precursor synthetase, complete cds Length = 13923 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 tcgccgccacccgcacctgc 472 |||||||||||||||||||| Sbjct: 9538 tcgccgccacccgcacctgc 9519
>dbj|AK046822.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B830015H24 product:ZINC FINGER TRANSCRIPTION FACTOR TREP-132 homolog [Homo sapiens], full insert sequence Length = 3953 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ctccgcctcctccgccgtcgccac 120 ||||||||||||||||| |||||| Sbjct: 1820 ctccgcctcctccgccgccgccac 1843
>dbj|AK035176.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430096I18 product:similar to ZINC FINGER TRANSCRIPTION FACTOR TREP-132 [Homo sapiens], full insert sequence Length = 3255 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ctccgcctcctccgccgtcgccac 120 ||||||||||||||||| |||||| Sbjct: 1949 ctccgcctcctccgccgccgccac 1972
>emb|AJ621311.1| Thermoproteus tenax tktA gene for transketolase C-terminal subunit Length = 948 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 ctacgcgctcaccttcgccg 458 |||||||||||||||||||| Sbjct: 225 ctacgcgctcaccttcgccg 244
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 208 aggcctgctgatgaacggcaacttcgag 235 |||||||||| | ||||||||||||||| Sbjct: 24702563 aggcctgctgctcaacggcaacttcgag 24702590
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 91 ctgcgtctccgcctcctccgccgtcgcc 118 |||||||||| |||||||||||| |||| Sbjct: 20042307 ctgcgtctcctcctcctccgccgccgcc 20042334
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ctccgccgtcgccacgctcg 125 |||||||||||||||||||| Sbjct: 7278755 ctccgccgtcgccacgctcg 7278736
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ccgcctcctccgccgtcgcc 118 |||||||||||||||||||| Sbjct: 30029779 ccgcctcctccgccgtcgcc 30029798
>gb|AY081774.1| Mus musculus transcriptional regulating protein 132 mRNA, complete cds Length = 4272 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ctccgcctcctccgccgtcgccac 120 ||||||||||||||||| |||||| Sbjct: 2089 ctccgcctcctccgccgccgccac 2112
>gb|AF345236.1|AF345236 Narenga porphyrocoma isolate R36 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 590 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 gccgggccgcagcccggcggcatg 349 ||||||||| |||||||||||||| Sbjct: 63 gccgggccgaagcccggcggcatg 40
>gb|AF345235.1|AF345235 Narenga porphyrocoma isolate R35 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 590 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 gccgggccgcagcccggcggcatg 349 ||||||||| |||||||||||||| Sbjct: 63 gccgggccgaagcccggcggcatg 40
>gb|AF345234.1|AF345234 Narenga porphyrocoma isolate R34 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 590 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 gccgggccgcagcccggcggcatg 349 ||||||||| |||||||||||||| Sbjct: 63 gccgggccgaagcccggcggcatg 40
>gb|AF345233.1|AF345233 Narenga porphyrocoma isolate R33 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 590 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 gccgggccgcagcccggcggcatg 349 ||||||||| |||||||||||||| Sbjct: 63 gccgggccgaagcccggcggcatg 40
>gb|AF133240.2|AF133240 Rhodobacter sphaeroides flagellar proximal rod protein FlgB (flgB), flagellar proximal rod protein FlgC (flgC), flagellar scaffolding protein FlgD (flgD), flagellar hook protein FlgE (flgE), and flagellar proximal rod protein FlgF (flgF) genes, complete cds Length = 3604 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 472 cgcgcaggacgaggccctgcgcat 495 |||||||||||||| ||||||||| Sbjct: 123 cgcgcaggacgagggcctgcgcat 100
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 ccttcgccgccacccgcacc 469 |||||||||||||||||||| Sbjct: 8829834 ccttcgccgccacccgcacc 8829815
>gb|AE004799.1| Pseudomonas aeruginosa PAO1, section 360 of 529 of the complete genome Length = 14652 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 gcctgctgatgaacggcaacttcg 233 ||||||||||| |||||||||||| Sbjct: 5067 gcctgctgatggacggcaacttcg 5044
>dbj|AB080263.1| Oryza sativa (japonica cultivar-group) OsRad51A2 gene for Rad51, complete cds Length = 4165 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ccgcctcctccgccgtcgcc 118 |||||||||||||||||||| Sbjct: 851 ccgcctcctccgccgtcgcc 832
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ccgcctcctccgccgtcgcc 118 |||||||||||||||||||| Sbjct: 9376 ccgcctcctccgccgtcgcc 9395
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 tcttcgccgtgccgcacggc 370 |||||||||||||||||||| Sbjct: 5410645 tcttcgccgtgccgcacggc 5410626
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 tcaccttcgccgccacccgc 466 |||||||||||||||||||| Sbjct: 2692946 tcaccttcgccgccacccgc 2692965
>dbj|AP006175.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0669G04 Length = 74610 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 91 ctgcgtctccgcctcctccgccgtcgcc 118 |||||||||| |||||||||||| |||| Sbjct: 49438 ctgcgtctcctcctcctccgccgccgcc 49465
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ccgcctcctccgccgtcgcc 118 |||||||||||||||||||| Sbjct: 130055 ccgcctcctccgccgtcgcc 130074
>dbj|AK120886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028P22, full insert sequence Length = 2111 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ctccgccgtcgccacgctcg 125 |||||||||||||||||||| Sbjct: 1690 ctccgccgtcgccacgctcg 1709
>dbj|AK101403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037G04, full insert sequence Length = 2423 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 91 ctgcgtctccgcctcctccgccgtcgcc 118 |||||||||| |||||||||||| |||| Sbjct: 14 ctgcgtctcctcctcctccgccgccgcc 41
>gb|AY110240.1| Zea mays CL5921_1 mRNA sequence Length = 872 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gccacgcgtcggcgtcgcag 412 |||||||||||||||||||| Sbjct: 413 gccacgcgtcggcgtcgcag 432
>gb|U46633.1|ZMU46633 Zea mays ssp. mexicana Doebley M092 ITS1, 5.8S ribosomal RNA, ITS2 Length = 602 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 gccgggccgcagcccggcggcatg 349 ||||||||| |||||||||||||| Sbjct: 63 gccgggccggagcccggcggcatg 40
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 208 aggcctgctgatgaacggcaacttcgag 235 |||||||||| | ||||||||||||||| Sbjct: 92086 aggcctgctgctcaacggcaacttcgag 92113
>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151203 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ccgcctcctccgccgtcgcc 118 |||||||||||||||||||| Sbjct: 13163 ccgcctcctccgccgtcgcc 13144
>ref|NM_172622.1| Mus musculus transcriptional regulating factor 1 (Trerf1), mRNA Length = 3953 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ctccgcctcctccgccgtcgccac 120 ||||||||||||||||| |||||| Sbjct: 1820 ctccgcctcctccgccgccgccac 1843
>gb|BC108416.1| Mus musculus transcriptional regulating factor 1, mRNA (cDNA clone MGC:118525 IMAGE:5697521), complete cds Length = 4018 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ctccgcctcctccgccgtcgccac 120 ||||||||||||||||| |||||| Sbjct: 1802 ctccgcctcctccgccgccgccac 1825
>gb|U06937.1|CRU06937 Chlamydomonas reinhardtii 21gr ribosomal protein S14 (CRY1) gene, complete cds Length = 4697 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 cgccacccgcacctgcgcgc 476 |||||||||||||||||||| Sbjct: 3281 cgccacccgcacctgcgcgc 3262
>dbj|AB080264.1| Oryza sativa (japonica cultivar-group) OsRad51A2 mRNA for Rad51, complete cds Length = 1303 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ccgcctcctccgccgtcgcc 118 |||||||||||||||||||| Sbjct: 52 ccgcctcctccgccgtcgcc 33 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,566,420 Number of Sequences: 3902068 Number of extensions: 2566420 Number of successful extensions: 69780 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67677 Number of HSP's gapped (non-prelim): 2098 length of query: 503 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 481 effective length of database: 17,147,199,772 effective search space: 8247803090332 effective search space used: 8247803090332 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
