>NPBL_COPCI (Q00333) Protein rad9 (SCC2 homolog)|
          Length = 2157

 Score = 34.3 bits (77), Expect = 0.073
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -3

Query: 257 SWSSMTR-SEPMTPPSIADDGCRSAPLSGSDRGATASDIPDMAAASVSLLSICSYGK 90
           S+  MT  S+P+TP        R APL+ + R + AS +P  A++S S+ S+ S  K
Sbjct: 372 SYKPMTLISQPLTPS-------RGAPLTPTSRASNASSVPTTASSSTSITSMSSSSK 421

>TWIST_DROME (P10627) Protein twist|
          Length = 490

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = -3

Query: 302 SGTRPDIEKTMMKATSWSSMTRSEPMTPPSIADDGCRSAPLSGSDRGATA 153
           S  R D+E     A S  S      M+P  +ADDG   + L GSD G  A
Sbjct: 290 SSDRDDMEYARHNALSSVSDLNGGVMSPACLADDGSAGSLLDGSDAGGKA 339

>TWIST_DROER (Q8I1G0) Protein twist|
          Length = 490

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = -3

Query: 302 SGTRPDIEKTMMKATSWSSMTRSEPMTPPSIADDGCRSAPLSGSDRGATA 153
           S  R D+E     A S  S      M+P  +ADDG   + L GSD G  A
Sbjct: 290 SSDRDDMEYARHNALSSVSDLNGGVMSPACLADDGSAGSLLDGSDAGGKA 339

>BRNQ_BACSU (P94499) Branched-chain amino acid transport system carrier protein|
           brnQ (Branched-chain amino acid uptake carrier brnQ)
          Length = 440

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 232 SLRVIELQLVAFIMVFSMSGLVPLIDLAFPVVTTLYLIVLSRLAFPSLHS 381
           S + I + L  F  + +  GL  LI ++ PV+ T+Y I +S +    LHS
Sbjct: 317 SYKKIAVVLSVFSTLVANIGLTQLIKVSMPVLLTMYPIAISLIFLTFLHS 366

>ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)|
          Length = 1669

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = -3

Query: 314 ARSMSGTRPDIEKTMMKATSWSSMTRSEPMTPPSIADDGCRSAPLSGSDRGATASDIPDM 135
           A S+SG+ P    T    TS SS + S   +  S       +AP + S  GA  + +   
Sbjct: 667 ASSISGSTPASSITSTSCTSSSSSSASMSSSCSSSNSGSTTTAPTTSSSAGAPTAPLTLA 726

Query: 134 AAASVSLLSI 105
           AAA  +L ++
Sbjct: 727 AAAETTLANV 736

>SYTL5_RAT (Q812E4) Synaptotagmin-like protein 5|
          Length = 753

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 182 LSGSDRGAT-ASDIPDMAAASVSLLSICSYGKCATDRRSP 66
           +SGSDRG+T +SD+ D  A   +    CS G     +RSP
Sbjct: 225 VSGSDRGSTTSSDLTDQEAGRGAPKGSCSNGGIPVTQRSP 264

>KN8R_YEAST (P53739) Probable serine/threonine-protein kinase YNR047W (EC|
           2.7.11.1)
          Length = 893

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 287 DIEK-TMMKATSWSSMTRSEPMTPPSIADDGCRSAPLSGSDRGATASD 147
           D++K    K   WS +   EP   P +++DG   A LS + +  T+ D
Sbjct: 770 DVKKHPFFKKVQWSLLRNQEPPLIPVLSEDGYDFAKLSSNKKRQTSQD 817

>IAA19_ARATH (O24409) Auxin-responsive protein IAA19 (Indoleacetic acid-induced|
           protein 19) (MASSUGU2 protein)
          Length = 197

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -3

Query: 287 DIEKTMMKATSWSSMTRSEPMTPPSIADDGCRSAPLSGSDRGATASDIPDMAAASVSLLS 108
           D+ + MMK  +++ M     MT      D C S  +S        +D P   +  V    
Sbjct: 21  DVAEKMMKKRAFTEMN----MTSSGSNSDQCESGVVSSGGDAEKVNDSPAAKSQVVGWPP 76

Query: 107 ICSYGK 90
           +CSY K
Sbjct: 77  VCSYRK 82

>EGSA_PYRFU (Q8U147) Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261)|
           (sn-glycerol-1-phosphate dehydrogenase) (G-1-P
           dehydrogenase) (Enantiomeric glycerophosphate synthase)
          Length = 346

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +1

Query: 19  LSSRKLVPRCSSFHYSGDRRSVAHLP*LQIDRRLTEAAAMSGISLAVAPRSDPDNGAERQ 198
           L S K+V R +     GD   V         R++ +A   SG+++++A  S P +GAE  
Sbjct: 198 LMSAKMVMRDAEIIRIGDDEGV---------RKVVKALISSGVAMSIAGSSRPASGAEHL 248

Query: 199 PSSAM 213
            S A+
Sbjct: 249 FSHAL 253

>POLG_HCVCO (Q9WMX2) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3009

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 200  GCRSAPLSGSDRGATASDIPDMAAASVSLLSICSYGKCAT 81
            GC    L+G DR     ++  ++ A+ S L+ C  G C T
Sbjct: 1040 GCIITSLTGRDRNQVEGEVQVVSTATQSFLATCVNGVCWT 1079

>PAC1_PSES3 (P15557) Acylase ACY 1 [Includes: Cephalosporin acylase (EC|
           3.5.1.-) (GL-7ACA acylase); Gamma-glutamyltranspeptidase
           (EC 2.3.2.2) (GGT)] [Contains: Acylase ACY 1 large
           subunit; Acylase ACY 1 small subunit]
          Length = 557

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 230 PMTPPSIADDGCRSAPLSGSDRGATASDIPDMAAASVSLL 111
           P+  P +AD  C   P SGS RG   ++ P  +AA   +L
Sbjct: 3   PVPVPRVADFTCEKKPASGS-RGMVVTNHPLASAAGAQIL 41

>E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78)|
          Length = 866

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -3

Query: 260 TSWSSMTRSEPMTPPSIADDGCRSAPLSGSDRGATASDIPDMAAASVSLLS 108
           TS SS + S   + P   D GC SA  SGS R   +S     ++A  S +S
Sbjct: 239 TSSSSPSSSAAHSSP---DSGCSSASSSGSSRSCGSSSASSSSSAVSSTIS 286

>SNPC3_MACFA (Q4R6Y6) snRNA-activating protein complex subunit 3 (SNAPc subunit|
           3) (snRNA-activating protein complex 50 kDa subunit)
           (SNAPc 50 kDa subunit) (Small nuclear RNA-activating
           complex polypeptide 3)
          Length = 412

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -3

Query: 221 PPSIADDGCRSAPLSGSDRGATASDIPDMAAASVSLLSICSYG--KCATDRRSPE 63
           PP+ A  G R    S  +  A A D+     A+  L ++C     KC  D   PE
Sbjct: 66  PPASALPGSRGIADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPE 120

>POLG_HCVTW (P29846) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3009

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 200  GCRSAPLSGSDRGATASDIPDMAAASVSLLSICSYGKCAT 81
            GC    L+G D+     ++  ++ A+ S L+ C  G C T
Sbjct: 1040 GCIITSLTGRDKNQVEGEVQVVSTATQSFLATCINGVCWT 1079

>POLG_HCVJT (Q00269) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3009

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 200  GCRSAPLSGSDRGATASDIPDMAAASVSLLSICSYGKCAT 81
            GC    L+G D+     ++  ++ A+ S L+ C  G C T
Sbjct: 1040 GCIVTSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWT 1079

>POLG_HCVJA (P26662) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3009

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 200  GCRSAPLSGSDRGATASDIPDMAAASVSLLSICSYGKCAT 81
            GC    L+G D+     ++  ++ A+ S L+ C  G C T
Sbjct: 1040 GCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWT 1079

>POLG_HCVBK (P26663) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3009

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 200  GCRSAPLSGSDRGATASDIPDMAAASVSLLSICSYGKCAT 81
            GC    L+G D+     ++  ++ A+ S L+ C  G C T
Sbjct: 1040 GCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWT 1079

>MOX2R_RAT (Q9ES58) Cell surface glycoprotein OX2 receptor precursor (CD200|
           cell surface glycoprotein receptor) (OX102 antigen)
          Length = 327

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -3

Query: 290 PDIEKTMMKATSWSSMTRSEPMTPPSIADDGCRSAPLSGSDRGATASDIPDMAA-ASVSL 114
           P I  T +   +W+   R +P    S   D   +   + SDR  T +  PD+A    +S 
Sbjct: 59  PSISLTKVILITWTITLRGQPSCIISYKADTRETHESNCSDRSITWASTPDLAPDLQISA 118

Query: 113 LSICSYGKCATDRRSPE 63
           +++   G+ + D   P+
Sbjct: 119 VALQHEGRYSCDIAVPD 135

>MMSB_PSEAE (P28811) 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (HIBADH)|
          Length = 298

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 112 RRLTEAAAMSGISLAVAPRSDPDNGAERQPSSAMLGG 222
           R++ EAAA  G++L  AP S    GA     S ++GG
Sbjct: 103 RKVAEAAAAKGLTLLDAPVSGGVGGARAGTLSFIVGG 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,919,194
Number of Sequences: 219361
Number of extensions: 559741
Number of successful extensions: 1924
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1923
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)