ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast63h07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472276.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 825 Score = 218 bits (110), Expect = 1e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 203 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 262 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 80 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 139 Query: 263 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 322 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 140 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 199 Query: 323 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 368 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 200 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 245
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 218 bits (110), Expect = 1e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 203 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 262 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 97464 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 97523 Query: 263 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 322 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 97524 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 97583 Query: 323 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 368 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 97584 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 97629 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 124 gaggcagctgccatgtcgggaatatcgctggccgtggcgccgcgg 168 ||||| || ||||||||||| || |||||||| |||| ||||||| Sbjct: 97373 gaggcggcggccatgtcggggatgtcgctggcggtggggccgcgg 97417
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 218 bits (110), Expect = 1e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 203 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 262 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 19005539 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 19005598 Query: 263 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 322 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 19005599 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 19005658 Query: 323 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 368 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 19005659 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 19005704 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 tcccgctcatcgacctcgcct 316 ||||||||||||||||||||| Sbjct: 29304945 tcccgctcatcgacctcgcct 29304965 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 124 gaggcagctgccatgtcgggaatatcgctggccgtggcgccgcgg 168 ||||| || ||||||||||| || |||||||| |||| ||||||| Sbjct: 19005448 gaggcggcggccatgtcggggatgtcgctggcggtggggccgcgg 19005492
>gb|AC127350.3| Mus musculus BAC clone RP23-64P14 from chromosome 18, complete sequence Length = 190228 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 7 tgccttcctctgctttcctctc 28 |||||||||||||||||||||| Sbjct: 165180 tgccttcctctgctttcctctc 165159
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 189 ggagcggcagccgtcgtcggcg 210 |||||||||||||||||||||| Sbjct: 4168143 ggagcggcagccgtcgtcggcg 4168122
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 240 cgtcatcgagctccagctcgtc 261 |||||||||||||||||||||| Sbjct: 5944913 cgtcatcgagctccagctcgtc 5944934
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 189 ggagcggcagccgtcgtcggcg 210 |||||||||||||||||||||| Sbjct: 4168130 ggagcggcagccgtcgtcggcg 4168109
>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123469 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 189 ggagcggcagccgtcgtcggcg 210 |||||||||||||||||||||| Sbjct: 110539 ggagcggcagccgtcgtcggcg 110518
>ref|XM_483522.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1500 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 gtcgtcaccaccctctacctc 342 ||||||||||||||||||||| Sbjct: 532 gtcgtcaccaccctctacctc 552
>ref|XM_507308.1| PREDICTED Oryza sativa (japonica cultivar-group), P0702C09.33 mRNA Length = 1517 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 gtcgtcaccaccctctacctc 342 ||||||||||||||||||||| Sbjct: 533 gtcgtcaccaccctctacctc 553
>ref|XM_473641.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1023 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 tcccgctcatcgacctcgcct 316 ||||||||||||||||||||| Sbjct: 116 tcccgctcatcgacctcgcct 136
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 339 cctcatcgtcctctcccgcctcgcc 363 ||||||| ||||||||||||||||| Sbjct: 3533142 cctcatcctcctctcccgcctcgcc 3533118
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 catcgacctcgccttcccggt 323 ||||||||||||||||||||| Sbjct: 67420 catcgacctcgccttcccggt 67440
>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence Length = 149892 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 tcccgctcatcgacctcgcct 316 ||||||||||||||||||||| Sbjct: 107991 tcccgctcatcgacctcgcct 108011
>emb|AL022071.1|SPBC354 S.pombe chromosome II cosmid c354 Length = 44124 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 gcctcgccttcccttcgctcc 376 ||||||||||||||||||||| Sbjct: 26893 gcctcgccttcccttcgctcc 26873
>ref|NM_001021140.1| Schizosaccharomyces pombe 972h- glucoamylase (SPBC354.10), partial mRNA Length = 2892 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 gcctcgccttcccttcgctcc 376 ||||||||||||||||||||| Sbjct: 150 gcctcgccttcccttcgctcc 130
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gtcgtcaccaccctctacctc 342 ||||||||||||||||||||| Sbjct: 26719880 gtcgtcaccaccctctacctc 26719860 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tcccgctcatcgacctcgcc 315 |||||||||||||||||||| Sbjct: 18562873 tcccgctcatcgacctcgcc 18562854 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tcccgctcatcgacctcgcc 315 |||||||||||||||||||| Sbjct: 18502719 tcccgctcatcgacctcgcc 18502700
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 339 cctcatcgtcctctcccgcctcgcc 363 ||||||| ||||||||||||||||| Sbjct: 3533253 cctcatcctcctctcccgcctcgcc 3533229
>dbj|AB210848.1| Lemna gibba LgGI H1 mRNA for GI homologue, complete cds Length = 3936 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 246 cgagctccagctcgtcgccttcatc 270 |||||||||||||||| |||||||| Sbjct: 2307 cgagctccagctcgtccccttcatc 2331
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gtcgtcaccaccctctacctc 342 ||||||||||||||||||||| Sbjct: 8396209 gtcgtcaccaccctctacctc 8396189
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 339 cctcatcgtcctctcccgcctcgcc 363 ||||||| ||||||||||||||||| Sbjct: 50795 cctcatcctcctctcccgcctcgcc 50771
>gb|AF230488.1|AF230488 Streptomyces coelicolor A3(2) F23a (f23a) gene, complete cds; and F23b (f23b) gene, partial cds Length = 1270 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 catcgacctcgccttcccggt 323 ||||||||||||||||||||| Sbjct: 847 catcgacctcgccttcccggt 827
>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702C09 Length = 138203 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gtcgtcaccaccctctacctc 342 ||||||||||||||||||||| Sbjct: 131407 gtcgtcaccaccctctacctc 131387
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 210 gatgctggggggcgtcatgggctcg 234 ||||||||| ||||||||||||||| Sbjct: 6714248 gatgctgggcggcgtcatgggctcg 6714224
>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24 Length = 186132 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gtcgtcaccaccctctacctc 342 ||||||||||||||||||||| Sbjct: 63222 gtcgtcaccaccctctacctc 63202
>dbj|AK106127.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F06, full insert sequence Length = 1500 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 gtcgtcaccaccctctacctc 342 ||||||||||||||||||||| Sbjct: 532 gtcgtcaccaccctctacctc 552
>dbj|AK104142.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-E07, full insert sequence Length = 1361 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 tcccgctcatcgacctcgcct 316 ||||||||||||||||||||| Sbjct: 191 tcccgctcatcgacctcgcct 211
>dbj|AK070510.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056B21, full insert sequence Length = 1517 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 gtcgtcaccaccctctacctc 342 ||||||||||||||||||||| Sbjct: 533 gtcgtcaccaccctctacctc 553
>dbj|AK061337.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C05, full insert sequence Length = 1361 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 tcccgctcatcgacctcgcct 316 ||||||||||||||||||||| Sbjct: 191 tcccgctcatcgacctcgcct 211
>ref|XM_482200.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1131 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 tcccgctcatcgacctcgcc 315 |||||||||||||||||||| Sbjct: 170 tcccgctcatcgacctcgcc 189
>ref|XM_482192.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 tcccgctcatcgacctcgcc 315 |||||||||||||||||||| Sbjct: 170 tcccgctcatcgacctcgcc 189
>ref|NM_197632.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0082M15.6), mRNA Length = 1024 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 337 tacctcatcgtcctctcccgcctcgccttccc 368 |||||| ||||||||||| |||||||||||| Sbjct: 229 tacctcgtcgtcctctccgtcctcgccttccc 260
>ref|NM_146153.3| Mus musculus thyroid hormone receptor associated protein 3 (Thrap3), mRNA Length = 4350 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 2814 cctcgccttcccggtcgtca 2795
>ref|XR_002399.1| PREDICTED: Mus musculus similar to thyroid hormone receptor associated protein 3 (LOC669162), mRNA Length = 3407 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 1881 cctcgccttcccggtcgtca 1862
>gb|BC040346.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone IMAGE:3498255), with apparent retained intron Length = 4283 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 2745 cctcgccttcccggtcgtca 2726
>gb|BC048391.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone IMAGE:6314114), complete cds Length = 1715 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 180 cctcgccttcccggtcgtca 161
>emb|AL390119.25| Human DNA sequence from clone RP11-403P14 on chromosome 1 Contains the 3' end of the PBX1 gene for pre-B-cell leukemia transcription factor 1 and a ribosomal protein L35a (RPL35A) pseudogene, complete sequence Length = 197482 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 cctgccttcctctgctttcctctc 28 |||||||||| ||||||||||||| Sbjct: 84288 cctgccttccactgctttcctctc 84265
>emb|AL139289.6| Human DNA sequence from clone RP1-92O14 on chromosome 1p33-34.2 Contains the 3' end of the TIE gene for tyrosine kinase with immunoglobulin and epidermal growth factor homology domains, the MPL gene for myeloproliferative leukemia virus oncogene, two novel genes, the CDC20 gene for CDC20 cell division cycle 20 homolog (S. cerevisiae), the ELOVL1 gene for elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1, the MED8 gene for mediator of RNA polymerase II transcription subunit 8 homolog (yeast) and the 5' end of the gene for a novel protein (LOC149469), complete sequence Length = 90433 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 ccctgccttcctctgctttcctct 27 |||||||||| ||||||||||||| Sbjct: 56593 ccctgccttcttctgctttcctct 56570
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 gccgtcgtcggcgatgctgg 217 |||||||||||||||||||| Sbjct: 49183 gccgtcgtcggcgatgctgg 49202
>gb|BC092239.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone MGC:116673 IMAGE:30659321), complete cds Length = 4266 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 2730 cctcgccttcccggtcgtca 2711
>gb|BC033472.1| Mus musculus thyroid hormone receptor associated protein 3, mRNA (cDNA clone IMAGE:4947317), with apparent retained intron Length = 1955 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 411 cctcgccttcccggtcgtca 392
>gb|AC093420.2| Homo sapiens chromosome 1 clone RP11-282K6, complete sequence Length = 193766 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 ccctgccttcctctgctttcctct 27 |||||||||| ||||||||||||| Sbjct: 190572 ccctgccttcttctgctttcctct 190549
>ref|NM_001038053.1| Bos taurus eukaryotic translation initiation factor 2-alpha kinase 1 (EIF2AK1), mRNA Length = 2860 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 cggcgatgctggggggcgtc 225 |||||||||||||||||||| Sbjct: 79 cggcgatgctggggggcgtc 98
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete sequence Length = 158550 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 337 tacctcatcgtcctctcccgcctcgccttccc 368 |||||| ||||||||||| |||||||||||| Sbjct: 138441 tacctcgtcgtcctctccgtcctcgccttccc 138472
>dbj|AK153954.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430012L16 product:thyroid hormone receptor associated protein 3, full insert sequence Length = 2121 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 613 cctcgccttcccggtcgtca 594
>dbj|AK169008.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920073L08 product:thyroid hormone receptor associated protein 3, full insert sequence Length = 1764 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 253 cctcgccttcccggtcgtca 234
>gb|DQ077734.1| Acipenser sturio arylalkylamine N-acetyltransferse 2 (AANAT2) mRNA, partial cds Length = 246 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 cagctcgtcgccttcatcat 272 |||||||||||||||||||| Sbjct: 16 cagctcgtcgccttcatcat 35
>dbj|AK046010.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230333E16 product:THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN COMPLEX COMPONENT TRAP150 homolog [Homo sapiens], full insert sequence Length = 2659 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 1147 cctcgccttcccggtcgtca 1128
>gb|BC111252.1| Bos taurus cDNA clone MGC:134528 IMAGE:8066490, complete cds Length = 2860 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 cggcgatgctggggggcgtc 225 |||||||||||||||||||| Sbjct: 79 cggcgatgctggggggcgtc 98
>gb|AF327494.1|AF327494 Styrax benzoin internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 645 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccttcctctgctttcctctc 28 |||||||||||||||||||| Sbjct: 78 ccttcctctgctttcctctc 97
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 tacctcatcgtcctctcccgcctcgccttccc 368 |||||| ||||||||||| |||||||||||| Sbjct: 20925950 tacctcgtcgtcctctccgtcctcgccttccc 20925919
>gb|AC132874.10| Mus musculus chromosome 7, clone RP24-215K5, complete sequence Length = 154316 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 21164 cctcgccttcccggtcgtca 21183
>gb|AY189899.1| Pseudorabies virus strain Ea UL15 (UL15), UL17 (UL17), UL16 (UL16), and UL14 (UL14) genes, complete cds; and UL13 (UL13) gene, partial cds Length = 6671 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 cctcgtcccgctcatcgacctcgc 314 ||||||||||||||||| |||||| Sbjct: 4579 cctcgtcccgctcatcgccctcgc 4556
>emb|AL731780.6| Mouse DNA sequence from clone RP23-365D10 on chromosome 4, complete sequence Length = 78870 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 67422 cctcgccttcccggtcgtca 67441
>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0671F11 Length = 159409 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tcccgctcatcgacctcgcc 315 |||||||||||||||||||| Sbjct: 144896 tcccgctcatcgacctcgcc 144877 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tcccgctcatcgacctcgcc 315 |||||||||||||||||||| Sbjct: 84742 tcccgctcatcgacctcgcc 84723
>dbj|AK110059.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-D08, full insert sequence Length = 3071 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggctcgctccgcgtcatcga 248 |||||||||||||||||||| Sbjct: 2696 ggctcgctccgcgtcatcga 2677
>dbj|AK107224.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-D06, full insert sequence Length = 1141 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 337 tacctcatcgtcctctcccgcctcgccttccc 368 |||||| ||||||||||| |||||||||||| Sbjct: 362 tacctcgtcgtcctctccgtcctcgccttccc 393
>gb|BC091635.1| Xenopus laevis cDNA clone MGC:98683 IMAGE:7200779, complete cds Length = 4541 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 2989 cctcgccttcccggtcgtca 2970
>tpe|BN000505.3| TPA: TPA_inf: Magnaporthe grisea 70-15 syn8 gene for putative polyketide synthase, exons 1-2 Length = 13004 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ccctctacctcatcgtcctctccc 355 ||||||| |||||||||||||||| Sbjct: 8703 ccctctagctcatcgtcctctccc 8726
>gb|BC088415.1| Rattus norvegicus thyroid hormone receptor associated protein 3, mRNA (cDNA clone MGC:94882 IMAGE:7110766), complete cds Length = 3586 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 2814 cctcgccttcccggtcgtca 2795
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 tacctcatcgtcctctcccgcctcgccttccc 368 |||||| ||||||||||| |||||||||||| Sbjct: 20937214 tacctcgtcgtcctctccgtcctcgccttccc 20937183
>ref|NM_001009693.1| Rattus norvegicus thyroid hormone receptor associated protein 3 (Thrap3), mRNA Length = 3586 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 2814 cctcgccttcccggtcgtca 2795
>gb|AC149603.5| Mus musculus BAC clone RP23-479L9 from 7, complete sequence Length = 177637 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cctcgccttcccggtcgtca 328 |||||||||||||||||||| Sbjct: 171918 cctcgccttcccggtcgtca 171899 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,413,400 Number of Sequences: 3902068 Number of extensions: 2413400 Number of successful extensions: 59467 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58779 Number of HSP's gapped (non-prelim): 685 length of query: 400 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 378 effective length of database: 17,147,199,772 effective search space: 6481641513816 effective search space used: 6481641513816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
