ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast63h01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0080I08, complete sequence Length = 197156 Score = 103 bits (52), Expect = 4e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 213 gactacgtgccggtgtacgtagcgctggggatgatcggcctggcggtgacgctgggggcg 272 |||||||||||||||||||| ||| |||||||||||| || ||||| ||||||| | Sbjct: 29633 gactacgtgccggtgtacgtggcgatggggatgatcgcggtgtcggtgtcgctgggcctg 29574 Query: 273 cacacggcgcggcagcagctggcgcacgcgcccaacgtctgggtcgacaagcgcaagcgc 332 |||||| |||||||||||||||||||||||||||| || |||||||| ||||| Sbjct: 29573 gcgacggcgaggcagcagctggcgcacgcgcccaacgtgcggctcgacaagaagaagcgg 29514 Query: 333 gaggcggtgcccgaggtggc 352 ||| |||||||||||||||| Sbjct: 29513 gagacggtgcccgaggtggc 29494
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 103 bits (52), Expect = 4e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 213 gactacgtgccggtgtacgtagcgctggggatgatcggcctggcggtgacgctgggggcg 272 |||||||||||||||||||| ||| |||||||||||| || ||||| ||||||| | Sbjct: 18764366 gactacgtgccggtgtacgtggcgatggggatgatcgcggtgtcggtgtcgctgggcctg 18764307 Query: 273 cacacggcgcggcagcagctggcgcacgcgcccaacgtctgggtcgacaagcgcaagcgc 332 |||||| |||||||||||||||||||||||||||| || |||||||| ||||| Sbjct: 18764306 gcgacggcgaggcagcagctggcgcacgcgcccaacgtgcggctcgacaagaagaagcgg 18764247 Query: 333 gaggcggtgcccgaggtggc 352 ||| |||||||||||||||| Sbjct: 18764246 gagacggtgcccgaggtggc 18764227
>dbj|AK063652.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-B03, full insert sequence Length = 770 Score = 103 bits (52), Expect = 4e-19 Identities = 118/140 (84%) Strand = Plus / Plus Query: 213 gactacgtgccggtgtacgtagcgctggggatgatcggcctggcggtgacgctgggggcg 272 |||||||||||||||||||| ||| |||||||||||| || ||||| ||||||| | Sbjct: 198 gactacgtgccggtgtacgtggcgatggggatgatcgcggtgtcggtgtcgctgggcctg 257 Query: 273 cacacggcgcggcagcagctggcgcacgcgcccaacgtctgggtcgacaagcgcaagcgc 332 |||||| |||||||||||||||||||||||||||| || |||||||| ||||| Sbjct: 258 gcgacggcgaggcagcagctggcgcacgcgcccaacgtgcggctcgacaagaagaagcgg 317 Query: 333 gaggcggtgcccgaggtggc 352 ||| |||||||||||||||| Sbjct: 318 gagacggtgcccgaggtggc 337
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 103 bits (52), Expect = 4e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 213 gactacgtgccggtgtacgtagcgctggggatgatcggcctggcggtgacgctgggggcg 272 |||||||||||||||||||| ||| |||||||||||| || ||||| ||||||| | Sbjct: 18924439 gactacgtgccggtgtacgtggcgatggggatgatcgcggtgtcggtgtcgctgggcctg 18924380 Query: 273 cacacggcgcggcagcagctggcgcacgcgcccaacgtctgggtcgacaagcgcaagcgc 332 |||||| |||||||||||||||||||||||||||| || |||||||| ||||| Sbjct: 18924379 gcgacggcgaggcagcagctggcgcacgcgcccaacgtgcggctcgacaagaagaagcgg 18924320 Query: 333 gaggcggtgcccgaggtggc 352 ||| |||||||||||||||| Sbjct: 18924319 gagacggtgcccgaggtggc 18924300
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 277 cggcgcggcagcagctggcgca 298 |||||||||||||||||||||| Sbjct: 2495629 cggcgcggcagcagctggcgca 2495608
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 277 cggcgcggcagcagctggcgc 297 ||||||||||||||||||||| Sbjct: 203079 cggcgcggcagcagctggcgc 203099
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 3904460 gctggggatgatcggcctgg 3904479
>gb|AC168047.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940115D9, complete sequence Length = 108001 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 gcggcagcagctggcgcacgcgcc 304 ||||| |||||||||||||||||| Sbjct: 5760 gcggccgcagctggcgcacgcgcc 5737
>ref|XM_472725.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1338 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cgacaagcgcaagcgcgagg 336 |||||||||||||||||||| Sbjct: 990 cgacaagcgcaagcgcgagg 1009
>gb|AY022805.1| Oryza sativa microsatellite MRG5130 containing (CGC)X8, closest to marker RG177, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cgacaagcgcaagcgcgagg 336 |||||||||||||||||||| Sbjct: 147 cgacaagcgcaagcgcgagg 128
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 4351765 gctggggatgatcggcctgg 4351746
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 4112990 gctggggatgatcggcctgg 4112971
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 3844993 gctggggatgatcggcctgg 3844974
>emb|AL035415.22|HS705F19 Human DNA sequence from clone RP4-705F19 on chromosome 1p32.2-34.2 Contains the 5' end of the SSBP3 gene for single stranded DNA binding protein 3, two novel genes and a CpG island, complete sequence Length = 136502 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 cacaaagaactccaaaccac 40 |||||||||||||||||||| Sbjct: 89641 cacaaagaactccaaaccac 89622
>ref|XM_778071.1| PREDICTED: Strongylocentrotus purpuratus similar to Baculoviral IAP repeat-containing protein 6 (Ubiquitin-conjugating BIR-domain enzyme apollon) (LOC577866), mRNA Length = 15738 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ctctgctgataacacccagg 77 |||||||||||||||||||| Sbjct: 7059 ctctgctgataacacccagg 7078
>gb|AC099042.9| Oryza sativa chromosome 10 BAC OSJNBa0041L14 genomic sequence, complete sequence Length = 158742 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 gccgccgccgctctccgcac 124 |||||||||||||||||||| Sbjct: 110673 gccgccgccgctctccgcac 110654
>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7 Length = 348764 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 tcggcctggcggtgacgctg 266 |||||||||||||||||||| Sbjct: 218428 tcggcctggcggtgacgctg 218409
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence Length = 138969 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cgacaagcgcaagcgcgagg 336 |||||||||||||||||||| Sbjct: 18434 cgacaagcgcaagcgcgagg 18453
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 3793445 gctggggatgatcggcctgg 3793464
>gb|AE005971.1| Caulobacter crescentus CB15 section 297 of 359 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ggcgcggcagcagctggcgc 297 |||||||||||||||||||| Sbjct: 9052 ggcgcggcagcagctggcgc 9033
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gacaagcgcaagcgcgaggc 337 |||||||||||||||||||| Sbjct: 741240 gacaagcgcaagcgcgaggc 741221
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cgacaagcgcaagcgcgagg 336 |||||||||||||||||||| Sbjct: 22809659 cgacaagcgcaagcgcgagg 22809678
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cggcgcggcagcagctggcg 296 |||||||||||||||||||| Sbjct: 25781977 cggcgcggcagcagctggcg 25781996
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gccgccgccgctctccgcac 124 |||||||||||||||||||| Sbjct: 6491507 gccgccgccgctctccgcac 6491526
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 3868834 gctggggatgatcggcctgg 3868815
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 205 ccgtgggcgactacgtgccggtgtacgtagcg 236 ||||||||| | ||||||||||||||| |||| Sbjct: 888413 ccgtgggcggcgacgtgccggtgtacgaagcg 888382
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 caagcgcaagcgcgaggcgg 339 |||||||||||||||||||| Sbjct: 1824909 caagcgcaagcgcgaggcgg 1824890 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 cggcctggcggtgacgctgg 267 |||||||||||||||||||| Sbjct: 895230 cggcctggcggtgacgctgg 895211
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 tcggcctccaccgcggccgcgcac 182 |||||| ||||||||||||||||| Sbjct: 3486936 tcggccgccaccgcggccgcgcac 3486913 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 3008122 gctggggatgatcggcctgg 3008103
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gccgccgccgctctccgcac 124 |||||||||||||||||||| Sbjct: 6493893 gccgccgccgctctccgcac 6493912
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cggcgcggcagcagctggcg 296 |||||||||||||||||||| Sbjct: 25710153 cggcgcggcagcagctggcg 25710172
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cggcgcggcagcagctggcg 296 |||||||||||||||||||| Sbjct: 3428 cggcgcggcagcagctggcg 3447
>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 167131 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cggcgcggcagcagctggcg 296 |||||||||||||||||||| Sbjct: 149215 cggcgcggcagcagctggcg 149234
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 4703085 gctggggatgatcggcctgg 4703066
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 4634102 gctggggatgatcggcctgg 4634083
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 3881050 gctggggatgatcggcctgg 3881031
>gb|L10328.1|ECOUW82 E. coli; the region from 81.5 to 84.5 minutes Length = 136254 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 36364 gctggggatgatcggcctgg 36345
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 3719089 gctggggatgatcggcctgg 3719108
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 3789987 gctggggatgatcggcctgg 3789968
>gb|M89479.1|ECOUHPABCT Escherichia coli uhpABCT operon encoding hexosephosphate utilization protein (uhpA) gene, complete cds, and hexosephosphate transport protein (uhpB, uhpC, uhpT) genes, complete cds Length = 5403 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 3919 gctggggatgatcggcctgg 3938
>gb|M17102.1|ECOUHP E.coli uhp operon encoding UhpA, UhpB, UhpC, and UhpT protein, (encoding hexose phosphate transport protein), complete cds, and an ilvBN operon encoded protein, 3' end Length = 5403 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 gctggggatgatcggcctgg 255 |||||||||||||||||||| Sbjct: 3919 gctggggatgatcggcctgg 3938 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,563,409 Number of Sequences: 3902068 Number of extensions: 2563409 Number of successful extensions: 50033 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48685 Number of HSP's gapped (non-prelim): 1348 length of query: 352 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 330 effective length of database: 17,147,199,772 effective search space: 5658575924760 effective search space used: 5658575924760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
