>SSG1_SORBI (Q43134) Granule-bound starch synthase 1, chloroplast precursor (EC|
           2.4.1.242) (Granule-bound starch synthase I) (GBSS-I)
          Length = 608

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -3

Query: 199 PAPAEAGAARRVGRKGDLPGRWIRGWAGDTAVLEMSRSMAPW 74
           PAP +  AARR GR G  P   +   AG   V  +   MAPW
Sbjct: 54  PAPRQQPAARRGGRGGRFPSLVVCATAGMNVVF-VGAEMAPW 94

>GCSP_SYNEL (Q8DII3) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 954

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 111 VSPAQPRIHLPGRSPFLPTRRAAPASAGAGFGTAAPW 221
           V P   + HL   +PFLPT +  P  +  G  TAAPW
Sbjct: 719 VGPIGVKAHL---APFLPTTQVIPQGSETGPVTAAPW 752

>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 1008

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 99  SRTAVSPAQPRIHLPGRSPFLPTRRAAPASAGAG 200
           S+   SPA PR H P +SP + +R  +P+ AG G
Sbjct: 48  SQQKASPAPPR-HTPDQSPGMESRHRSPSGAGEG 80

>DCTS_RHOCA (P37739) C4-dicarboxylate transport sensor protein dctS (EC|
           2.7.13.3)
          Length = 657

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -3

Query: 214 AAVPK-PAPAEAGAARRVGRKGDLPGRWIRGWAGDTAVLEMSRSMAPWXXXXXGEESPRG 38
           AAVP+ P PAEA   R++   G LP R + G   D  V+   R  A           P  
Sbjct: 128 AAVPEGPGPAEAALVRQLLASGALPPRPVYGPVRDGRVVLAERVSASGGVVVATVSLPMM 187

Query: 37  VER 29
           +ER
Sbjct: 188 LER 190

>CDTA_ECOLI (Q46668) Cytolethal distending toxin subunit A precursor (CDT A)|
          Length = 258

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 105 TAVSPAQPRIHLPGRSPFLPTRRAAP 182
           T  SP +P + LPG  P LPT  A P
Sbjct: 45  TVPSPDEPGLPLPGPGPALPTNGAIP 70

>CGHR_XANMA (P37125) Chorionicgonadotropic hormone-like receptor (CGH-R)|
           (Fragment)
          Length = 113

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = +1

Query: 76  TAPWSGSSPG--RRCPRPSHGSTC 141
           T PW    P   RRCPRP+   TC
Sbjct: 51  TLPWPAPCPAHPRRCPRPTPKKTC 74

>PTPA1_ASPFU (Q4WMU5) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 473

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 147 RSPFLPTRRAAPASAGAGFGTAAPWA 224
           R+P+    +AAP    AG GTAAPWA
Sbjct: 394 RAPWATATQAAPP---AGAGTAAPWA 416

>ZSWM5_HUMAN (Q9P217) Zinc finger SWIM domain-containing protein 5|
          Length = 1185

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 78  GAMERLISRTAVSPAQPRIHLPGRSPFLPTRRAAPASAGAGFG 206
           G  E L+S + VSPA+ +   P  SP     R +P +AG G G
Sbjct: 5   GEREELLSPSPVSPAKRQCSWP--SPQAHHPRGSPGAAGGGAG 45

>PHR_STRGR (P12768) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 455

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 163 GRKGDLPGRWIRGWAGDTAVLEMSRSMAPW 74
           G++ D  G ++RGW  + A +E S    PW
Sbjct: 393 GKRFDARGDYVRGWVPELAEVEGSAIHEPW 422

>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 217 GAAVPKPAPAEAGAARRVGRKGDLPGRWIR-GWAGDTAVLEMSRSMAP 77
           GA+ P+P  + AG   R  RK   PGR +R G  G+   L++S    P
Sbjct: 590 GASSPRPPSSGAGPGSR--RKPASPGRTLRNGRGGEAEPLDLSLRAGP 635

>PDC6I_MOUSE (Q9WU78) Programmed cell death 6-interacting protein|
           (ALG-2-interacting protein X) (ALG-2-interacting protein
           1) (E2F1-inducible protein) (Eig2)
          Length = 869

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 75  HGAMERLISRTAVSPAQPRIHLPGRSPFLPTRRAAPASAG---AGFGTAA 215
           H A     +   + PA+P+       P LP  R  PASA    AG GTA+
Sbjct: 735 HAAAPPTPAPRTMPPAKPQPPARPPPPVLPANRVPPASAAAAPAGVGTAS 784

>COQ4_SCHPO (O94453) Ubiquinone biosynthesis protein COQ4 homolog|
          Length = 272

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 102 RTAVSPAQPRIHLPGRSPFLPTRRAAPASAGAGFGTAAPW 221
           R   + A+ +++ PG  P  P +R    +  A  G  APW
Sbjct: 35  RLLFTAAERKVNYPGHVPLSPLQRIFLVAGSAIMGLKAPW 74

>SALL3_HUMAN (Q9BXA9) Sal-like protein 3 (Zinc finger protein SALL3) (hSALL3)|
          Length = 1300

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = +3

Query: 84  MERLISRTAVSPAQPRIHLPGRSPF-------LPTRRAAPASAGAGFGTAAPWA 224
           M+R   R ++SPA      PG +P        LP    APA+A AG G AAP A
Sbjct: 233 MQRPPPRPSLSPAAAP-SAPGPAPSQLPGLAALPLSAGAPAAAIAGSGPAAPAA 285

>IF2_RALSO (Q8XZV6) Translation initiation factor IF-2|
          Length = 964

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 223 AHGAAVPKPAPAEAGAARRVGRKGDLPGRW 134
           A  AA P  APA   A  + G +G  PG W
Sbjct: 300 AKKAAAPAAAPAATPAGDKKGGRGGKPGGW 329

>RPGR1_MOUSE (Q9EPQ2) X-linked retinitis pigmentosa GTPase regulator-interacting|
           protein 1 (RPGR-interacting protein 1)
          Length = 1331

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 84  MERLISRTAVSPAQPRIHLPGRSPFL 161
           ++RL   TAV  AQPR+H   R P +
Sbjct: 125 VQRLCPSTAVGSAQPRVHAGRRLPHI 150

>SYNP2_MOUSE (Q91YE8) Synaptopodin-2 (Myopodin)|
          Length = 1087

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 129 VAGPGTPPSWR*AAPW 82
           VAGP  PP W   APW
Sbjct: 632 VAGPAQPPPWPQPAPW 647

>RUNX1_HUMAN (Q01196) Runt-related transcription factor 1 (Core-binding factor,|
           alpha 2 subunit) (CBF-alpha 2) (Acute myeloid leukemia 1
           protein) (Oncogene AML-1) (Polyomavirus enhancer-binding
           protein 2 alpha B subunit) (PEBP2-alpha B) (PEA2-alpha
           B) (SL
          Length = 453

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 114 SPAQPRIHLPGRSPFLPTRRAAPASAGAGFGTAA 215
           S + PR+H PG   + PT    P ++G G G +A
Sbjct: 314 SISDPRMHYPGAFTYSPT----PVTSGIGIGMSA 343

>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 93  LISRTAVSPAQPRIHLPGRSPFLPTRRAAPASAGAGFGTAA 215
           +I  TA +PA+P    P  +P        PASAGA  GT A
Sbjct: 489 VIDLTANAPARPADPAPAAAP-------GPASAGAQIGTPA 522


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,793,881
Number of Sequences: 219361
Number of extensions: 456806
Number of successful extensions: 1975
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1972
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)