ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast63g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550632.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.0
2ref|XM_550633.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.0
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
4dbj|AB126053.1| Bombyx mori DNA, chromosome W, BAC clone 45J23S-... 42 1.0
5gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.0
6dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
7dbj|AP006554.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
8dbj|AK106314.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.0
9emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 42 1.0
10dbj|AK063346.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.0
11gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.0
12dbj|D55702.1| Bombyx mori DNA, clone TREST1, partial cds 42 1.0
13ref|XM_469860.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.1
14gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 4.1
15gb|AC111116.13| Mus musculus chromosome 16, clone RP23-214I13, c... 40 4.1
16gb|AY260902.1| Rhodospirillum centenum che2 gene cluster, comple... 40 4.1
17gb|DQ356948.1| Crocodilepox virus, complete genome 40 4.1
18gb|AC149044.1| Pan troglodytes chromosome X clone PTB-089E19 map... 40 4.1
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.1
20gb|BC007322.1| Mus musculus proprotein convertase subtilisin/kex... 40 4.1
21gb|AC115731.11| Mus musculus chromosome 16, clone RP23-184A15, c... 40 4.1
22emb|AL445645.10| Human DNA sequence from clone RP11-295G24 on ch... 40 4.1
23emb|AL121875.10|HSBA51C14 Human DNA sequence from clone RP11-51C... 40 4.1
24emb|X71135.1|HSSOX3 H.sapiens sox3 gene 40 4.1
25emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete ... 40 4.1
26gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom... 40 4.1
27dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
29gb|BC093865.1| Homo sapiens SRY (sex determining region Y)-box 3... 40 4.1
30gb|BC093863.1| Homo sapiens SRY (sex determining region Y)-box 3... 40 4.1
31dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
32dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
33gb|AF264713.1|AF264713 Homo sapiens sex determining region Y box... 40 4.1
34dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.1
35emb|AJ322962.1|HSA322962 Homo sapiens genomic sequence surroundi... 40 4.1
36dbj|AK066684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.1
37gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 4.1
38gb|AC004589.1|AC004589 Homo sapiens chromosome 9q34, clone 269A1... 40 4.1
39ref|NM_005634.2| Homo sapiens SRY (sex determining region Y)-box... 40 4.1 
>ref|XM_550632.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1679

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 254 tgccgcggtcgccgccgcggt 274
           |||||||||||||||||||||
Sbjct: 641 tgccgcggtcgccgccgcggt 661
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>ref|XM_550633.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1732

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 254 tgccgcggtcgccgccgcggt 274
           |||||||||||||||||||||
Sbjct: 847 tgccgcggtcgccgccgcggt 827
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 254     tgccgcggtcgccgccgcggt 274
               |||||||||||||||||||||
Sbjct: 2592432 tgccgcggtcgccgccgcggt 2592452
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>dbj|AB126053.1| Bombyx mori DNA, chromosome W, BAC clone 45J23S-4, non-LTR
           retrotransposon TREST1 partial sequence
          Length = 1806

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 284 cggtgcttcggccccggccacggcc 308
           |||||||||||| ||||||||||||
Sbjct: 311 cggtgcttcggcaccggccacggcc 287
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 255     gccgcggtcgccgccgcggtgcggc 279
               |||||||||||||||||| ||||||
Sbjct: 2522680 gccgcggtcgccgccgcgctgcggc 2522704
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>dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0710H01
          Length = 187107

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   tgccgcggtcgccgccgcggt 274
             |||||||||||||||||||||
Sbjct: 47773 tgccgcggtcgccgccgcggt 47793
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>dbj|AP006554.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0529C07
          Length = 174011

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 254  tgccgcggtcgccgccgcggt 274
            |||||||||||||||||||||
Sbjct: 4179 tgccgcggtcgccgccgcggt 4199
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>dbj|AK106314.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-D09, full
           insert sequence
          Length = 1732

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 254 tgccgcggtcgccgccgcggt 274
           |||||||||||||||||||||
Sbjct: 847 tgccgcggtcgccgccgcggt 827
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 240     ccgccgcgtcccggtgccgcggtcgccgc 268
               ||||||| |||||||||||||| ||||||
Sbjct: 1403296 ccgccgcctcccggtgccgcggccgccgc 1403324
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>dbj|AK063346.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B08, full
           insert sequence
          Length = 1679

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 254 tgccgcggtcgccgccgcggt 274
           |||||||||||||||||||||
Sbjct: 641 tgccgcggtcgccgccgcggt 661
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 255     gccgcggtcgccgccgcggtg 275
               |||||||||||||||||||||
Sbjct: 3799914 gccgcggtcgccgccgcggtg 3799894
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>dbj|D55702.1| Bombyx mori DNA, clone TREST1, partial cds
          Length = 1738

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 284 cggtgcttcggccccggccacggcc 308
           |||||||||||| ||||||||||||
Sbjct: 628 cggtgcttcggcaccggccacggcc 652
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>ref|XM_469860.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2215

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  tgtgcgcgcagccgccgcgt 248
            ||||||||||||||||||||
Sbjct: 1058 tgtgcgcgcagccgccgcgt 1039
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 264    gccgccgcggtgcggcatga 283
              ||||||||||||||||||||
Sbjct: 178607 gccgccgcggtgcggcatga 178588
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>gb|AC111116.13| Mus musculus chromosome 16, clone RP23-214I13, complete sequence
          Length = 173839

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     ctactggggaaagttggcaggcac 24
             ||||||||| ||||||||||||||
Sbjct: 20878 ctactggggtaagttggcaggcac 20901
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>gb|AY260902.1| Rhodospirillum centenum che2 gene cluster, complete sequence
          Length = 11332

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 260  ggtcgccgccgcggtgcggc 279
            ||||||||||||||||||||
Sbjct: 6572 ggtcgccgccgcggtgcggc 6553
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>gb|DQ356948.1| Crocodilepox virus, complete genome
          Length = 190054

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   cggtgccgcggtcgccgccg 270
             ||||||||||||||||||||
Sbjct: 16777 cggtgccgcggtcgccgccg 16758
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>gb|AC149044.1| Pan troglodytes chromosome X clone PTB-089E19 map human ortholog q27.1,
             complete sequence
          Length = 193569

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 248   tcccggtgccgcggtcgccgccgc 271
             |||||||||||||| |||||||||
Sbjct: 21558 tcccggtgccgcggccgccgccgc 21535
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 229      tgtgcgcgcagccgccgcgt 248
                ||||||||||||||||||||
Sbjct: 31176714 tgtgcgcgcagccgccgcgt 31176695
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>gb|BC007322.1| Mus musculus proprotein convertase subtilisin/kexin type 7, mRNA
            (cDNA clone IMAGE:3979585), containing frame-shift errors
          Length = 3637

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   ccatggagcggctcatctcc 101
            ||||||||||||||||||||
Sbjct: 2272 ccatggagcggctcatctcc 2253
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>gb|AC115731.11| Mus musculus chromosome 16, clone RP23-184A15, complete sequence
          Length = 228467

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1      ctactggggaaagttggcaggcac 24
              ||||||||| ||||||||||||||
Sbjct: 208682 ctactggggtaagttggcaggcac 208705
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>emb|AL445645.10| Human DNA sequence from clone RP11-295G24 on chromosome 9 Contains the
              TSC1 gene for tuberous sclerosis 1, the C9orf9 gene for
              chromosome 9 open reading frame 9 protein, the 5' end of
              gene FLJ32704, two novel gene, the 5' end of a novel gene
              and three CpG islands, complete sequence
          Length = 199113

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    ccgggcagatcccccttcct 160
              ||||||||||||||||||||
Sbjct: 106621 ccgggcagatcccccttcct 106640
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>emb|AL121875.10|HSBA51C14 Human DNA sequence from clone RP11-51C14 on chromosome Xq26.2-27.3
              Contains an embryonic ectoderm development (EED)
              pseudogene, a ribosomal protein S17 (RPS17) pseudogene, the
              SOX3 gene for SRY (sex determining region Y)-box 3 and
              three CpG islands, complete sequence
          Length = 148598

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 248    tcccggtgccgcggtcgccgccgc 271
              |||||||||||||| |||||||||
Sbjct: 106551 tcccggtgccgcggccgccgccgc 106528
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>emb|X71135.1|HSSOX3 H.sapiens sox3 gene
          Length = 2509

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 248  tcccggtgccgcggtcgccgccgc 271
            |||||||||||||| |||||||||
Sbjct: 1134 tcccggtgccgcggccgccgccgc 1157
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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     tctccaggacggcggtgtcc 116
              ||||||||||||||||||||
Sbjct: 164025 tctccaggacggcggtgtcc 164006
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>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
             sequence
          Length = 128017

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   tgtgcgcgcagccgccgcgt 248
             ||||||||||||||||||||
Sbjct: 97355 tgtgcgcgcagccgccgcgt 97336
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 229      tgtgcgcgcagccgccgcgt 248
                ||||||||||||||||||||
Sbjct: 31267237 tgtgcgcgcagccgccgcgt 31267218
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 255      gccgcggtcgccgccgcggt 274
                ||||||||||||||||||||
Sbjct: 37239827 gccgcggtcgccgccgcggt 37239808
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>gb|BC093865.1| Homo sapiens SRY (sex determining region Y)-box 3, mRNA (cDNA clone
           MGC:120900 IMAGE:7939710), complete cds
          Length = 1421

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 248 tcccggtgccgcggtcgccgccgc 271
           |||||||||||||| |||||||||
Sbjct: 749 tcccggtgccgcggccgccgccgc 772
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>gb|BC093863.1| Homo sapiens SRY (sex determining region Y)-box 3, mRNA (cDNA clone
           MGC:120898 IMAGE:7939708), complete cds
          Length = 1431

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 248 tcccggtgccgcggtcgccgccgc 271
           |||||||||||||| |||||||||
Sbjct: 749 tcccggtgccgcggccgccgccgc 772
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>dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0489B03
          Length = 150381

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    gccgcggtcgccgccgcggt 274
              ||||||||||||||||||||
Sbjct: 114483 gccgcggtcgccgccgcggt 114464
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>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0679C12
          Length = 153666

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   gccgcggtcgccgccgcggt 274
             ||||||||||||||||||||
Sbjct: 76816 gccgcggtcgccgccgcggt 76797
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>gb|AF264713.1|AF264713 Homo sapiens sex determining region Y box 3 (SOX3) gene, complete
           cds
          Length = 1692

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 248 tcccggtgccgcggtcgccgccgc 271
           |||||||||||||| |||||||||
Sbjct: 810 tcccggtgccgcggccgccgccgc 833
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 255     gccgcggtcgccgccgcggt 274
               ||||||||||||||||||||
Sbjct: 5093909 gccgcggtcgccgccgcggt 5093890
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>emb|AJ322962.1|HSA322962 Homo sapiens genomic sequence surrounding NotI site, clone NR1-ML6C
          Length = 664

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 248 tcccggtgccgcggtcgccgccgc 271
           |||||||||||||| |||||||||
Sbjct: 39  tcccggtgccgcggccgccgccgc 16
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>dbj|AK066684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068H20, full
           insert sequence
          Length = 2987

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 tgtgcgcgcagccgccgcgt 248
           ||||||||||||||||||||
Sbjct: 490 tgtgcgcgcagccgccgcgt 471
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 221     ggcccggctgtgcgcgcagc 240
               ||||||||||||||||||||
Sbjct: 3332210 ggcccggctgtgcgcgcagc 3332229
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>gb|AC004589.1|AC004589 Homo sapiens chromosome 9q34, clone 269A1, complete sequence
          Length = 35488

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   ccgggcagatcccccttcct 160
             ||||||||||||||||||||
Sbjct: 12600 ccgggcagatcccccttcct 12581
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>ref|NM_005634.2| Homo sapiens SRY (sex determining region Y)-box 3 (SOX3), mRNA
          Length = 2074

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 248 tcccggtgccgcggtcgccgccgc 271
           |||||||||||||| |||||||||
Sbjct: 693 tcccggtgccgcggccgccgccgc 716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,611,587
Number of Sequences: 3902068
Number of extensions: 1611587
Number of successful extensions: 33073
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32210
Number of HSP's gapped (non-prelim): 863
length of query: 312
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 290
effective length of database: 17,147,199,772
effective search space: 4972687933880
effective search space used: 4972687933880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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