>YC66L_SYNY3 (Q55823) Ycf66-like protein|
          Length = 337

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
 Frame = +2

Query: 242 TPAGEDVLDPSATPLRRRGARIRAYAHGRRHLRPE-------LVRYCALLRHRPPSVQQP 400
           T A  D L+P   P+ R   R+R Y    R  RP+         R  +  R+ PP+   P
Sbjct: 111 TEAELDQLEPEDEPVARNNRRLRGYDDDARSGRPDGYGEAEARPRPRSQGRNAPPTNPNP 170

Query: 401 KPLQRSPRARARIHPSPAHAP 463
           +P +  P A       P  AP
Sbjct: 171 RPTRSRPSAGRSAPQRPGPAP 191

>MA2B1_CAVPO (Q8VHC8) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)|
           (Mannosidase, alpha B) (Lysosomal acid
           alpha-mannosidase) (Laman) (Mannosidase alpha class 2B
           member 1)
          Length = 1007

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +3

Query: 357 TAPSSDIGLPQSNNPNLFSDLLGPALGSTRAQPTRRSDQ 473
           T PS+ + L  S NP L    L PALG +    TR SDQ
Sbjct: 542 TVPSTVVELTSSGNPELLFPALVPALGFSVYSVTRVSDQ 580

>POLN_MAYAB (Q8QZ73) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
            2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2436

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 23/74 (31%), Positives = 30/74 (40%)
 Frame = +2

Query: 233  HMVTPAGEDVLDPSATPLRRRGARIRAYAHGRRHLRPELVRYCALLRHRPPSVQQPKPLQ 412
            H  TP  E    P   P   R  R+ A    R  ++ E+        H+PPS Q  KP+ 
Sbjct: 1710 HQPTPTAELATHPVPPPRPNRARRLAA---ARVQVQVEV--------HQPPSNQPTKPI- 1757

Query: 413  RSPRARARIHPSPA 454
              P  R  + P PA
Sbjct: 1758 --PAPRTSLRPVPA 1769

>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
            chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 374  HRPPSVQQPKPLQRSPRARARIHPSPAH 457
            H PP  Q P P    P+   + HPSP H
Sbjct: 1024 HPPPGQQPPPPQPAKPQQVIQHHPSPRH 1051

>NETR_PONPY (Q5G269) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 877

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 314 YAHGRRHLRPELVRYCALL--RHRPPSVQQPKPLQRSPRARARIHPSPAHA 460
           + H  RH  P  ++Y   L  + RPP  + P PL R PR    +     HA
Sbjct: 31  HRHRHRHSPPPGLQYPYYLPTQQRPPRTRPPPPLPRFPRPPRALPAQRPHA 81

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +2

Query: 290 RRGARIRAYAHGRRHLRPELVRYCALLRHRPPSVQQPKPLQRSPRARARIHPSPAHAPLR 469
           R  +R R+ +    H RP   R+ +  R RP   ++P P +R+P    R+ P P H   R
Sbjct: 282 RSKSRSRSRSRSPSHSRPRR-RHRSRSRRRPSPRRRPSPRRRTP--PRRMPPPPRHRRSR 338

Query: 470 S 472
           S
Sbjct: 339 S 339

>VIME_RAT (P31000) Vimentin|
          Length = 465

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = +3

Query: 72  YSGDRSSSRPT------TTSFDSYQFDFGANASRSSTSRPLRDQRPGGA 200
           + G  +SSRP+      TTS  +Y      +A R STSR L    PGGA
Sbjct: 14  FGGSGTSSRPSSNRSYVTTSTRTYSL---GSALRPSTSRSLYSSSPGGA 59

>VIME_MOUSE (P20152) Vimentin|
          Length = 465

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = +3

Query: 72  YSGDRSSSRPT------TTSFDSYQFDFGANASRSSTSRPLRDQRPGGA 200
           + G  +SSRP+      TTS  +Y      +A R STSR L    PGGA
Sbjct: 14  FGGSGTSSRPSSNRSYVTTSTRTYSL---GSALRPSTSRSLYSSSPGGA 59

>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 317 AHGRRHLRPELVRYC---ALLRHRPPSVQQPKPLQRSPRARARIHPSPAHAPLR 469
           A+GR H  P +  Y     L   +PP  QQP P Q+ P+      P P  +P R
Sbjct: 148 AYGRYHADPNMDPYRYGQPLPGGKPPQQQQPHPQQQPPQ-----QPGPGGSPNR 196

>RPGR1_MOUSE (Q9EPQ2) X-linked retinitis pigmentosa GTPase regulator-interacting|
           protein 1 (RPGR-interacting protein 1)
          Length = 1331

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +2

Query: 230 KHMVTPAGED--VLDPSATPLRR--RGARIRAYAHGRRHLRPELVRYCALLRHRPPSVQQ 397
           +H++    ED  V D  ++PL +   G  +RA  H  R  + EL      L   P  V++
Sbjct: 2   QHLLEYMPEDLPVRDTDSSPLLKGTSGKNVRAQPHLGRMNQKELNCRRLHLHEEPTLVKE 61

Query: 398 PKPLQRSPRARAR 436
           P P QR    R R
Sbjct: 62  PSPKQRDKNRRRR 74

>ZBT17_MOUSE (Q60821) Zinc finger and BTB domain-containing protein 17 (Zinc|
           finger protein 151) (Zinc finger protein 100) (Zfp-100)
           (Polyomavirus late initiator promoter-binding protein)
           (LP-1) (Zinc finger protein Z13)
          Length = 794

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -3

Query: 460 RVGWARVDPSAGPRRSLK--RFGLLD*GRPMSEEGAVADQLRPEMSPTMGIGPDP--SAA 293
           R+G AR   S GP R LK  R G  +     +E+   AD   P   P + + PDP  S A
Sbjct: 149 RLGQARGSSSTGPGRELKEERGGQAESASSGAEQTEKAD--APREPPPVELKPDPTSSMA 206

Query: 292 AAE 284
           AAE
Sbjct: 207 AAE 209

>NETR_HUMAN (P56730) Neurotrypsin precursor (EC 3.4.21.-) (Motopsin) (Leydin)|
          Length = 875

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 320 HGRRHLRPELVRYCALL--RHRPPSVQQPKPLQRSPRARARIHPSPAHA 460
           H  RH  P    Y   L  + RPP+ + P PL R PR    +     HA
Sbjct: 31  HSHRHSPPAGPHYPYYLPTQQRPPTTRPPPPLPRFPRPPRALPAQRPHA 79

>CREA_BOTCI (O94130) DNA-binding protein creA (Carbon catabolite repressor)|
          Length = 435

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
 Frame = +2

Query: 212 TEANHHKHMVTPAGEDVLDPSATPLRRRGARIRAYAHGRRHLRPELVRYCALLRHRPPSV 391
           T A H+     P  +     S+   R     ++AYA  R H   E   Y     HR    
Sbjct: 230 TTATHYSQHTQPRHQPYYSHSSHNSRNHLPSLQAYAMTRAHSHEEDDHYA----HRHAKR 285

Query: 392 QQP-KPLQRSPRARARIH----PSPAHAPL 466
            +P  P+  +P +    H    P+P H PL
Sbjct: 286 SRPNSPMSTAPSSPTFSHDSLSPTPDHTPL 315

>SCAR3_ARATH (Q9LP46) Protein SCAR3 (AtSCAR3) (Protein WAVE2)|
          Length = 1020

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 69  SYSGDRSSSRPTTTSFDSYQFDFGANASRSSTSR 170
           S+SG  SS++ T+TS    ++DF  + SRS  SR
Sbjct: 215 SFSGQTSSTKTTSTSDMEKRYDFQDHHSRSFESR 248

>M4K4_MOUSE (P97820) Mitogen-activated protein kinase kinase kinase kinase 4|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 4) (MEK
           kinase kinase 4) (MEKKK 4) (HPK/GCK-like kinase HGK)
           (Nck-interacting kinase)
          Length = 1233

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = +2

Query: 335 LRPELVRYCALLRH---RPPSVQQPKPLQRSPRARARIH---PSPAHAP 463
           L+ +L++  A+L H   RP + QQP P Q+  R++   H   P P + P
Sbjct: 481 LQQQLLQEQAMLLHDHRRPHAQQQPPPPQQQDRSKPSFHAPEPKPHYDP 529

>NETR_PANTR (Q5G271) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 875

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = +2

Query: 320 HGRRHLRPELVRYCALL--RHRPPSVQQPKPLQRSPRARARIHPSPAHA 460
           H  RH  P    Y   L  + RPP  + P PL R PR    +     HA
Sbjct: 31  HSHRHSPPPGPHYPYYLPTQQRPPRTRPPPPLPRFPRPPRALPAQRPHA 79

>NETR_MACMU (Q5G267) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 875

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +2

Query: 311 AYAHGRRHLRPELVRYCALL--RHRPPSVQQPKPLQRSPRARARIHPSPAHA 460
           ++ H  RH  P   +Y   L    RPP  + P PL R PR    +     HA
Sbjct: 28  SFHHRHRHSPPPGPQYPYYLPTHQRPPRTRPPPPLPRFPRPPRALPAQRPHA 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,110,375
Number of Sequences: 219361
Number of extensions: 894085
Number of successful extensions: 3853
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3840
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)